MD17G1083600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0028793
Physical Location & Seq
Forward (+)
6931452 .. 6931873
422 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1083600.v1.1.491

Sequence Viewer

Length: 222 bp
ATGTCTGCCATAGGAGAACCATGGGTTAGAGTTTTGGTGATCGCATCGTATCTGGCCTTGGCCATTTTTCATCACTCAAAGAAGGTATCAGATACGGAGGAGGAAATTGTAGTGGCTAACAGGAAGCTTCGAATGCCCTTGCTTGGTGCAGGTTTAGCCATCGGAATTCGTCTTGCTGCTAAGTGGGCTGGCTACCGGCATTTGACATGGATGATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.14

Weight (kDa)

9.99

Isoelectric Point (pI)

28.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtTam38 PF25114 1 - 73 5.9e-31 AtTam38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028793)

Species Orthologous Gene IDs
malus_domestica MD17G1083600.v1.1
pyrus_communis pycom09g01910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 143
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AoxI GGCC 2 cut(s) 54, 60
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 130
BalI TGGCCA 1 cut(s) 62
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BmsI GCATC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 130
BsaJI CCNNGG 2 cut(s) 20, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 20, 57
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 2 cut(s) 56, 62
BsiSI CCGG 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 143
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 2 cut(s) 56, 62
Bsp119I TTCGAA 1 cut(s) 130
Bsp143I GATC 1 cut(s) 39
Bsp19I CCATGG 1 cut(s) 20
BspANI GGCC 2 cut(s) 56, 62
BspMI ACCTGC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 20, 57
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 2 cut(s) 20, 57
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 216
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 133, 155, 185
BstV1I GCAGC 1 cut(s) 163
BsuRI GGCC 2 cut(s) 56, 62
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 216
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 195
CviAII CATG 2 cut(s) 21, 207
CviJI RGCY 7 cut(s) 56, 62, 116, 127, 158, 188, 192
CviKI_1 RGCY 7 cut(s) 56, 62, 116, 127, 158, 188, 192
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 20, 57
EcoRI GAATTC 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 20, 57
ErhI CCWWGG 2 cut(s) 20, 57
FaeI CATG 2 cut(s) 24, 210
FaiI YATR 4 cut(s) 11, 22, 208, 220
FatI CATG 2 cut(s) 20, 206
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 56, 62
HapII CCGG 1 cut(s) 196
Hin1II CATG 2 cut(s) 24, 210
HindIII AAGCTT 1 cut(s) 125
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 91, 164
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 155, 185
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 2 cut(s) 24, 210
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 5 cut(s) 38, 106, 135, 174, 209
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 53
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 2 cut(s) 105, 165
MluNI TGGCCA 1 cut(s) 62
MnlI CCTC 2 cut(s) 91, 94
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 133, 155, 185
NcoI CCATGG 1 cut(s) 20
NdeII GATC 1 cut(s) 39
NlaIII CATG 2 cut(s) 24, 210
NspV TTCGAA 1 cut(s) 130
PctI GAATGC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 178
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 39
SetI ASST 3 cut(s) 87, 129, 154
SfaNI GCATC 1 cut(s) 53
SfuI TTCGAA 1 cut(s) 130
Sse9I AATT 2 cut(s) 105, 165
StyI CCWWGG 2 cut(s) 20, 57
TaqI TCGA 1 cut(s) 130
TasI AATT 2 cut(s) 105, 165
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 110
XapI RAATTY 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.