Prupe.1G000400_v2.0.a1

Sigma factor PP2C-like phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0020150
Physical Location & Seq
Forward (+)
71369 .. 79957
8589 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G000400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 900 bp
ATGAGTAAGAAGTCAGAAGAAACAGAAGCTTCAGCTTCCCGCATCACTAGAGGAACCAGCTTCCTTGACAAGATAAAGAGTGCTACATGCCTTAATTCGTCGTCTTCAGACTCAGGAAAAGGGAGAAGCAAGTCCTCTTCTATCAGAGTGGCCCATGGGTTCCATTTAGTCCAAGGAAAATCTGGTCATGATATGGAGGACTACCATGTTGCTGAGTACAGAAAAAGAAAAAACCACGTCCTTGGATTGTTTGCTATCTTCGATGGTCATTTAGGCGATCGCGTCCCTACTTATTTGAAAGAAAACCTTTTCAACAACATAATTGAAGAGCCCAGTTTCTGGAAAGACCCCGAGACAGCAATAAGGAATGCTTACTGCTCCACAGATAAGTTTATTTTAGATCATTCCATGCAATTAGGGCCAGGTGGGTCGACTGCAGTAACTGCAATAGTCATTGACGGCAAAGACTTATGGGTCGCAAATGTTGGTGACTCAAGAGCTGTTGTGTGTGAGAGGGGTTCTGCAACCCAACTTACTGTGGACCATGAGCCACACAGTGAGCGAAGAAGGATTGAGAAGCAGGGTGGTTTTGTGACTACTCTTCCGGGAGATGTACCTAGAGTTAATGGTCAACTTGCAGTTGCACGTGCTTTTGGGGATCAAAGCCTTAAAGCACATTTGAGTTCAGAGCCTGATGTAAGACATGTGCCCGTAGGCTCCACTATTGAATTTGTTATATTAGCAAGTGACGGATTATGGAAGGTTATGAAGAATCAAGAGGCAGTAGATTTGGTGAAACCCATAAAAGATCCACAAGTAGCAGCAAAGCGTCTAACAACTGAAGCACTAGCAAGAAAGAGTAAAGATGATATATCATGCATTGTGATCCGTTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 map04011
Pfam Domains
Protein Families
PP2C

Protein Analysis

300

Amino Acids

32.77

Weight (kDa)

8.58

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78200 AT1G78200 AT1G78200 AT1G78200 AT1G78200
prunus_persica Prupe.1G000400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 473
AccB7I CCANNNNNTGG 1 cut(s) 339
AccI GTMKAC 1 cut(s) 431
AccII CGCG 1 cut(s) 282
AciI CCGC 1 cut(s) 40
AclWI GGATC 3 cut(s) 666, 803, 880
AcsI RAATTY 1 cut(s) 728
AcuI CTGAAG 3 cut(s) 15, 90, 861
AcvI CACGTG 1 cut(s) 647
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 2 cut(s) 218, 615
AfiI CCNNNNNNNGG 1 cut(s) 339
AflIII ACRYGT 1 cut(s) 703
AgsI TTSAA 4 cut(s) 298, 313, 326, 728
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 4 cut(s) 29, 35, 60, 500
AluI AGCT 4 cut(s) 29, 35, 60, 500
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 3 cut(s) 666, 803, 880
AlwNI CAGNNNCTG 3 cut(s) 339, 443, 692
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 2 cut(s) 150, 419
ApeKI GCWGC 1 cut(s) 821
ApoI RAATTY 1 cut(s) 728
AsiSI GCGATCGC 1 cut(s) 280
AspS9I GGNCC 3 cut(s) 151, 419, 541
AsuC2I CCSGG 1 cut(s) 606
AsuHPI GGTGA 2 cut(s) 500, 805
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 1 cut(s) 541
BaeGI GKGCMC 1 cut(s) 711
BanII GRGCYC 1 cut(s) 333
BbrPI CACGTG 1 cut(s) 647
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 833
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 423
BcnI CCSGG 1 cut(s) 606
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 3 cut(s) 48, 618, 848
BfmI CTRYAG 1 cut(s) 435
BisI GCNGC 1 cut(s) 822
BlsI GCNGC 1 cut(s) 823
Bme1390I CCNGG 2 cut(s) 423, 606
Bme18I GGWCC 1 cut(s) 541
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 3 cut(s) 151, 419, 541
BmiI GGNNCC 3 cut(s) 55, 161, 718
BmrFI CCNGG 2 cut(s) 423, 606
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 478
BpuMI CCSGG 1 cut(s) 606
BsaAI YACGTR 1 cut(s) 647
BsaJI CCNNGG 3 cut(s) 154, 172, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 154, 172, 241
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 126, 204
BseNI ACTGG 1 cut(s) 333
BseSI GKGCMC 1 cut(s) 711
BseXI GCAGC 1 cut(s) 833
Bsh1236I CGCG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 2 cut(s) 152, 421
BsiEI CGRYCG 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 1 cut(s) 605
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 2 cut(s) 152, 421
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 333, 711
Bsp143I GATC 5 cut(s) 277, 400, 658, 808, 885
Bsp19I CCATGG 1 cut(s) 154
BspACI CCGC 1 cut(s) 40
BspANI GGCC 2 cut(s) 152, 421
BspCNI CTCAG 2 cut(s) 125, 205
BspFNI CGCG 1 cut(s) 282
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 55, 161, 718
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 3 cut(s) 666, 803, 880
BspQI GCTCTTC 1 cut(s) 321
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 3 cut(s) 154, 172, 241
BssMI GATC 5 cut(s) 277, 400, 658, 808, 885
BssT1I CCWWGG 3 cut(s) 154, 172, 241
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 538, 557
Bst6I CTCTTC 3 cut(s) 142, 321, 606
BstAPI GCANNNNNTGC 1 cut(s) 443
BstBAI YACGTR 1 cut(s) 647
BstDEI CTNAG 2 cut(s) 112, 213
BstDSI CCRYGG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 282
BstKTI GATC 5 cut(s) 280, 403, 661, 811, 888
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 5 cut(s) 277, 400, 658, 808, 885
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 2 cut(s) 418, 443
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 2 cut(s) 90, 707
BstSCI CCNGG 2 cut(s) 421, 604
BstSFI CTRYAG 1 cut(s) 435
BstSLI GKGCMC 1 cut(s) 711
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 833
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 808
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 1 cut(s) 808
BsuRI GGCC 2 cut(s) 152, 421
BtgI CCRYGG 1 cut(s) 154
BtrI CACGTC 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 562
CaiI CAGNNNCTG 3 cut(s) 339, 443, 692
CciI TCATGA 1 cut(s) 187
Cfr13I GGNCC 3 cut(s) 151, 419, 541
CseI GACGC 2 cut(s) 271, 818
Csp6I GTAC 2 cut(s) 217, 614
CviAII CATG 8 cut(s) 87, 155, 188, 206, 409, 545, 704, 876
CviQI GTAC 2 cut(s) 217, 614
DdeI CTNAG 2 cut(s) 112, 213
DpnI GATC 5 cut(s) 279, 402, 660, 810, 887
DpnII GATC 5 cut(s) 277, 400, 658, 808, 885
DraIII CACNNNGTG 1 cut(s) 557
DrdI GACNNNNNNGTC 1 cut(s) 473
DseDI GACNNNNNNGTC 1 cut(s) 473
Eam1104I CTCTTC 3 cut(s) 142, 321, 606
EarI CTCTTC 3 cut(s) 142, 321, 606
Eco130I CCWWGG 3 cut(s) 154, 172, 241
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 541
Eco57I CTGAAG 3 cut(s) 15, 90, 861
Eco72I CACGTG 1 cut(s) 647
Eco88I CYCGRG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 3 cut(s) 154, 172, 241
EcoT22I ATGCAT 1 cut(s) 881
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 3 cut(s) 154, 172, 241
FaeI CATG 8 cut(s) 90, 158, 191, 209, 412, 548, 707, 879
FalI AAGNNNNNCTT 4 cut(s) 291, 323, 355, 387
FaqI GGGAC 1 cut(s) 269
FatI CATG 8 cut(s) 86, 154, 187, 205, 408, 544, 703, 875
FauI CCCGC 1 cut(s) 47
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 1 cut(s) 822
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 822
FspBI CTAG 3 cut(s) 48, 618, 848
GluI GCNGC 1 cut(s) 822
HaeIII GGCC 2 cut(s) 152, 421
HapII CCGG 1 cut(s) 605
HgaI GACGC 2 cut(s) 271, 818
Hin1II CATG 8 cut(s) 90, 158, 191, 209, 412, 548, 707, 879
HincII GTYRAC 2 cut(s) 432, 632
HindII GTYRAC 2 cut(s) 432, 632
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 3 cut(s) 110, 491, 772
HpaII CCGG 1 cut(s) 605
HphI GGTGA 2 cut(s) 500, 805
Hpy166II GTNNAC 3 cut(s) 432, 541, 632
Hpy188I TCNGA 4 cut(s) 16, 109, 146, 688
Hpy188III TCNNGA 5 cut(s) 114, 188, 340, 495, 776
Hpy8I GTNNAC 3 cut(s) 432, 541, 632
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 561, 754
HpyCH4III ACNGT 2 cut(s) 538, 557
HpyCH4IV ACGT 2 cut(s) 237, 646
HpyCH4V TGCA 7 cut(s) 412, 437, 446, 524, 638, 644, 879
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 443
HpyF3I CTNAG 2 cut(s) 112, 213
HpySE526I ACGT 2 cut(s) 237, 646
Hsp92II CATG 8 cut(s) 90, 158, 191, 209, 412, 548, 707, 879
Kzo9I GATC 5 cut(s) 277, 400, 658, 808, 885
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 383, 722
Lsp1109I GCAGC 1 cut(s) 833
LweI GCATC 1 cut(s) 51
MaeI CTAG 3 cut(s) 48, 618, 848
MaeII ACGT 2 cut(s) 237, 646
MaeIII GTNAC 4 cut(s) 439, 488, 592, 746
MalI GATC 5 cut(s) 279, 402, 660, 810, 887
MboI GATC 5 cut(s) 277, 400, 658, 808, 885
MboII GAAGA 8 cut(s) 29, 96, 129, 250, 338, 576, 593, 781
MflI RGATCY 1 cut(s) 808
MhlI GDGCHC 2 cut(s) 333, 711
MluCI AATT 4 cut(s) 94, 321, 413, 728
MlyI GAGTC 2 cut(s) 104, 485
MnlI CCTC 5 cut(s) 44, 145, 190, 507, 772
Mph1103I ATGCAT 1 cut(s) 881
MseI TTAA 3 cut(s) 93, 624, 669
MspI CCGG 1 cut(s) 605
MspR9I CCNGG 2 cut(s) 423, 606
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 418, 443
NciI CCSGG 1 cut(s) 606
NcoI CCATGG 1 cut(s) 154
NdeII GATC 5 cut(s) 277, 400, 658, 808, 885
NlaIII CATG 8 cut(s) 90, 158, 191, 209, 412, 548, 707, 879
NlaIV GGNNCC 3 cut(s) 55, 161, 718
NmuCI GTSAC 3 cut(s) 488, 592, 746
NsiI ATGCAT 1 cut(s) 881
NspI RCATGY 2 cut(s) 90, 707
PagI TCATGA 1 cut(s) 187
PciI ACATGT 1 cut(s) 703
PciSI GCTCTTC 1 cut(s) 321
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 1 cut(s) 772
PflMI CCANNNNNTGG 1 cut(s) 339
PfoI TCCNGGA 1 cut(s) 604
PkrI GCNGC 1 cut(s) 823
Ple19I CGATCG 1 cut(s) 280
PleI GAGTC 2 cut(s) 104, 485
PmaCI CACGTG 1 cut(s) 647
PmlI CACGTG 1 cut(s) 647
PpsI GAGTC 2 cut(s) 104, 485
Ppu21I YACGTR 1 cut(s) 647
PscI ACATGT 1 cut(s) 703
Psp6I CCWGG 1 cut(s) 421
PspCI CACGTG 1 cut(s) 647
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 3 cut(s) 55, 161, 718
PspPI GGNCC 3 cut(s) 151, 419, 541
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 3 cut(s) 339, 443, 692
PsuI RGATCY 1 cut(s) 808
PvuI CGATCG 1 cut(s) 280
RgaI GCGATCGC 1 cut(s) 280
RsaI GTAC 2 cut(s) 218, 615
RsaNI GTAC 2 cut(s) 217, 614
SalI GTCGAC 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 3 cut(s) 93, 624, 669
SatI GCNGC 1 cut(s) 822
Sau3AI GATC 5 cut(s) 277, 400, 658, 808, 885
Sau96I GGNCC 3 cut(s) 151, 419, 541
SchI GAGTC 2 cut(s) 104, 485
ScrFI CCNGG 2 cut(s) 423, 606
SduI GDGCHC 2 cut(s) 333, 711
SfaAI GCGATCGC 1 cut(s) 280
SfaNI GCATC 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 435
SgfI GCGATCGC 1 cut(s) 280
SinI GGWCC 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 4 cut(s) 94, 321, 413, 728
SsiI CCGC 1 cut(s) 40
SspMI CTAG 3 cut(s) 48, 618, 848
StyD4I CCNGG 2 cut(s) 421, 604
StyI CCWWGG 3 cut(s) 154, 172, 241
TaaI ACNGT 2 cut(s) 538, 557
TaiI ACGT 2 cut(s) 240, 649
TaqI TCGA 2 cut(s) 261, 431
TasI AATT 4 cut(s) 94, 321, 413, 728
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 772
Tru1I TTAA 3 cut(s) 93, 624, 669
Tru9I TTAA 3 cut(s) 93, 624, 669
TscAI CASTG 1 cut(s) 562
TseFI GTSAC 3 cut(s) 488, 592, 746
TseI GCWGC 1 cut(s) 821
Tsp45I GTSAC 3 cut(s) 488, 592, 746
TspDTI ATGAA 1 cut(s) 782
TspGWI ACGGA 2 cut(s) 765, 878
TspRI CASTG 1 cut(s) 562
Van91I CCANNNNNTGG 1 cut(s) 339
VpaK11BI GGWCC 1 cut(s) 541
XapI RAATTY 1 cut(s) 728
XceI RCATGY 2 cut(s) 90, 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 431
XspI CTAG 3 cut(s) 48, 618, 848
Zsp2I ATGCAT 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.