Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0019808

Physical Location & Seq

Genomic Coordinates Forward (+)

686138 .. 689706

Gene Structure 3569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G008200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCTCTGCGTTACCTCTTCGGCGGAGTAACCCACACCGCTGTCAACCATACTCACCTCATGCTCAAGCCCTATATTGGCTTCTGTGCACTATTAAATCACAATGCTTTGATCCCCATTTCTTCTTCTTCTTCTTCTTCAGCGTTTGTATTTCTCCATGGCTCTCCTTCTTTTTCTTCTGCAAACCCAATTTCAGGTTCACAAAGTTGTACAACATCACCCCCATGTGGTGGCACTTGCATTTACATGGGTGCCCACGAGGATGATTGGATCATCAGACTCGCCAAGTTTGCAGTAGAGCAGCACAATTTCAAAGAGAGTAAGAATCTTCAATATGTGAGGGTGTTGGGGGCAAGCCACACTATGGTTTCTAGCATATTGTACCATATTACACTGGAGACAGTTGATGCTACTAAGCCTAAGATTTACCATGCAGTTGTTTGGTTACAAATATTAAAGAACTTCATGGAGTTGCTTGCATGGAAGCCCGTTAATGACCGCTTGTCGGTTCTTGGTGTTAAGTCCGGGATCCATGGAACAACCAACAACCATGACCCTCTTCTCGTGTCTTCATATAGAGGACAGATTTTCGTGCATACCCTGAGAAGCAAAGAGACATTAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

209

Amino Acids

22.97

Weight (kDa)

9.08

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019808)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G008200_v2.0.a1 Prupe.1G008200_v2.0.a1 Prupe.1G008200_v2.0.a1 Prupe.1G008200_v2.0.a1 Prupe.1G008200_v2.0.a1 Prupe.1G008200_v2.0.a1
pyrus_communis	pycom04g00680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccB7I	CCANNNNNTGG	2 cut(s)	230, 364
AciI	CCGC	3 cut(s)	24, 39, 499
AclWI	GGATC	4 cut(s)	106, 278, 523, 536
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	2 cut(s)	211, 383
AfiI	CCNNNNNNNGG	6 cut(s)	77, 194, 227, 230, 364, 505
AgsI	TTSAA	2 cut(s)	313, 332
AhdI	GACNNNNNGTC	1 cut(s)	502
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	3 cut(s)	9, 392, 608
Alw44I	GTGCAC	1 cut(s)	87
AlwI	GGATC	4 cut(s)	106, 278, 523, 536
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	526
AsuHPI	GGTGA	2 cut(s)	47, 210
BaeGI	GKGCMC	2 cut(s)	91, 256
BamHI	GGATCC	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	251
BauI	CACGAG	2 cut(s)	257, 563
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	3 cut(s)	9, 392, 608
BfaI	CTAG	1 cut(s)	372
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	526
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	253, 530
BmrFI	CCNGG	1 cut(s)	526
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	526
BsaJI	CCNNGG	2 cut(s)	157, 532
Bsc4I	CCNNNNNNNGG	6 cut(s)	77, 194, 227, 230, 364, 505
Bse1I	ACTGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	157, 532
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	6 cut(s)	77, 194, 227, 230, 364, 505
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	1 cut(s)	399
BseSI	GKGCMC	2 cut(s)	91, 256
BseXI	GCAGC	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	525
BslI	CCNNNNNNNGG	6 cut(s)	77, 194, 227, 230, 364, 505
BsmAI	GTCTC	3 cut(s)	9, 392, 608
Bsp1286I	GDGCHC	2 cut(s)	91, 256
Bsp1407I	TGTACA	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	111, 270, 528
Bsp19I	CCATGG	2 cut(s)	157, 532
BspACI	CCGC	3 cut(s)	24, 39, 499
BspCNI	CTCAG	1 cut(s)	594
BspLI	GGNNCC	2 cut(s)	253, 530
BspPI	GGATC	4 cut(s)	106, 278, 523, 536
BspT107I	GGYRCC	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	157, 532
BssMI	GATC	3 cut(s)	111, 270, 528
BssSI	CACGAG	2 cut(s)	257, 563
BssT1I	CCWWGG	2 cut(s)	157, 532
Bst2BI	CACGAG	2 cut(s)	257, 563
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	2 cut(s)	23, 564
BstAUI	TGTACA	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	355, 477
BstDEI	CTNAG	3 cut(s)	414, 420, 602
BstDSI	CCRYGG	2 cut(s)	157, 532
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	3 cut(s)	114, 273, 531
BstMAI	GTCTC	3 cut(s)	9, 392, 608
BstMBI	GATC	3 cut(s)	111, 270, 528
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	524
BstSLI	GKGCMC	2 cut(s)	91, 256
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
BtgI	CCRYGG	2 cut(s)	157, 532
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	2 cut(s)	355, 477
Csp6I	GTAC	2 cut(s)	210, 382
CviAII	CATG	9 cut(s)	61, 158, 225, 247, 431, 466, 480, 533, 551
CviJI	RGCY	6 cut(s)	70, 81, 162, 357, 418, 487
CviKI_1	RGCY	6 cut(s)	70, 81, 162, 357, 418, 487
CviQI	GTAC	2 cut(s)	210, 382
DdeI	CTNAG	3 cut(s)	414, 420, 602
DpnI	GATC	3 cut(s)	113, 272, 530
DpnII	GATC	3 cut(s)	111, 270, 528
DriI	GACNNNNNGTC	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	23, 564
Eam1105I	GACNNNNNGTC	1 cut(s)	502
EarI	CTCTTC	2 cut(s)	23, 564
EciI	GGCGGA	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	157, 532
Eco57I	CTGAAG	1 cut(s)	123
EcoT14I	CCWWGG	2 cut(s)	157, 532
ErhI	CCWWGG	2 cut(s)	157, 532
FaeI	CATG	9 cut(s)	64, 161, 228, 250, 434, 469, 483, 536, 554
FatI	CATG	9 cut(s)	60, 157, 224, 246, 430, 465, 479, 532, 550
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	416
HapII	CCGG	1 cut(s)	525
Hin1II	CATG	9 cut(s)	64, 161, 228, 250, 434, 469, 483, 536, 554
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	279, 325
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	2 cut(s)	47, 210
Hpy166II	GTNNAC	3 cut(s)	46, 89, 200
Hpy188I	TCNGA	1 cut(s)	278
Hpy8I	GTNNAC	3 cut(s)	46, 89, 200
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	7 cut(s)	89, 182, 240, 293, 434, 479, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	414, 420, 602
Hsp92II	CATG	9 cut(s)	64, 161, 228, 250, 434, 469, 483, 536, 554
Kzo9I	GATC	3 cut(s)	111, 270, 528
LpnPI	CCDG	4 cut(s)	180, 380, 538, 614
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	11, 28, 444
MalI	GATC	3 cut(s)	113, 272, 530
MboI	GATC	3 cut(s)	111, 270, 528
MflI	RGATCY	1 cut(s)	528
MhlI	GDGCHC	2 cut(s)	91, 256
MluCI	AATT	2 cut(s)	189, 307
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	6 cut(s)	26, 68, 253, 333, 567, 572
MseI	TTAA	5 cut(s)	95, 455, 492, 519, 620
MslI	CAYNNNNRTG	3 cut(s)	223, 245, 261
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	526
MwoI	GCNNNNNNNGC	1 cut(s)	290
NciI	CCSGG	1 cut(s)	526
NcoI	CCATGG	2 cut(s)	157, 532
NdeII	GATC	3 cut(s)	111, 270, 528
NlaIII	CATG	9 cut(s)	64, 161, 228, 250, 434, 469, 483, 536, 554
NlaIV	GGNNCC	2 cut(s)	253, 530
PfeI	GAWTC	1 cut(s)	325
PflMI	CCANNNNNTGG	2 cut(s)	230, 364
PfoI	TCCNGGA	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	253, 530
PsuI	RGATCY	1 cut(s)	528
RsaI	GTAC	2 cut(s)	211, 383
RsaNI	GTAC	2 cut(s)	210, 382
RseI	CAYNNNNRTG	3 cut(s)	223, 245, 261
SaqAI	TTAA	5 cut(s)	95, 455, 492, 519, 620
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	3 cut(s)	111, 270, 528
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	526
SduI	GDGCHC	2 cut(s)	91, 256
SetI	ASST	4 cut(s)	18, 60, 199, 626
SfaNI	GCATC	1 cut(s)	397
SmiMI	CAYNNNNRTG	3 cut(s)	223, 245, 261
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	189, 307
SsiI	CCGC	3 cut(s)	24, 39, 499
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	524
StyI	CCWWGG	2 cut(s)	157, 532
TaaI	ACNGT	1 cut(s)	403
TasI	AATT	2 cut(s)	189, 307
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	5 cut(s)	95, 455, 492, 519, 620
Tru9I	TTAA	5 cut(s)	95, 455, 492, 519, 620
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	454, 561
TspRI	CASTG	1 cut(s)	399
Van91I	CCANNNNNTGG	2 cut(s)	230, 364
VneI	GTGCAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.