Prupe.1G026300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0029153
Physical Location & Seq
Reverse (-)
1819286 .. 1821917
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G026300.1

Sequence Viewer

Length: 348 bp
ATGAAGATCGGGTCGAACAACCTGTACTGGCGAATAAAGGGCAACGGAGTTGGTCATCTACAGACGGTGGCAGGTGGCCGGCGGCTGGAGTCCGACGGTGGTGGTCGGCGACGGGCGGTGGCGACCAACGGTGGTGGTGGCAGGTGGCCGGCAGCGGGAGTCCGGCGGTGGTGGCCGGCAGCGGGAGTCCGGCGGTGGTGGCCGGCGGCGAGATATGATTGGCTAGATATGGACATGTGGCATAGTATGCTTGCCTTAGAAGGAGTGGCATTGTGTGTAATTTTGATATGTTTTAATGATATTTTTGTAAAATTAGGTACCACAATTTGGTCTTTTGCCTTATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.83

Weight (kDa)

10.48

Isoelectric Point (pI)

61.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029153)

Species Orthologous Gene IDs
prunus_persica Prupe.1G026300_v2.0.a1 Prupe.1G279600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 62, 132
Acc36I ACCTGC 2 cut(s) 62, 132
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 327
AciI CCGC 7 cut(s) 82, 116, 155, 166, 182, 193, 206
AcoI YGGCCR 4 cut(s) 76, 146, 173, 200
AfaI GTAC 2 cut(s) 26, 319
AfiI CCNNNNNNNGG 4 cut(s) 85, 155, 182, 327
AflIII ACRYGT 1 cut(s) 234
AoxI GGCC 4 cut(s) 76, 146, 173, 200
ApeKI GCWGC 2 cut(s) 152, 179
Asp718I GGTACC 1 cut(s) 317
BanI GGYRCC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 164, 191
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 59
BfuAI ACCTGC 2 cut(s) 62, 132
BisI GCNGC 4 cut(s) 83, 153, 180, 207
BlsI GCNGC 4 cut(s) 84, 154, 181, 208
BmiI GGNNCC 1 cut(s) 319
BpmI CTGGAG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 155, 182, 327
Bse118I RCCGGY 4 cut(s) 78, 148, 175, 202
Bse1I ACTGG 1 cut(s) 32
BseLI CCNNNNNNNGG 4 cut(s) 85, 155, 182, 327
BseNI ACTGG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 164, 191
BshFI GGCC 4 cut(s) 78, 148, 175, 202
BshNI GGYRCC 1 cut(s) 317
BsiSI CCGG 6 cut(s) 79, 149, 163, 176, 190, 203
BslI CCNNNNNNNGG 4 cut(s) 85, 155, 182, 327
BsnI GGCC 4 cut(s) 78, 148, 175, 202
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 7 cut(s) 82, 116, 155, 166, 182, 193, 206
BspANI GGCC 4 cut(s) 78, 148, 175, 202
BspLI GGNNCC 1 cut(s) 319
BspMI ACCTGC 2 cut(s) 62, 132
BspT107I GGYRCC 1 cut(s) 317
BsrFI RCCGGY 4 cut(s) 78, 148, 175, 202
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 4 cut(s) 78, 148, 175, 202
BssMI GATC 1 cut(s) 6
Bst4CI ACNGT 3 cut(s) 67, 98, 131
BstAPI GCANNNNNTGC 1 cut(s) 247
BstC8I GCNNGC 5 cut(s) 80, 150, 177, 204, 252
BstDEI CTNAG 1 cut(s) 256
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 3 cut(s) 172, 199, 247
BstNSI RCATGY 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 164, 191
BsuRI GGCC 4 cut(s) 78, 148, 175, 202
BveI ACCTGC 2 cut(s) 62, 132
Cac8I GCNNGC 5 cut(s) 80, 150, 177, 204, 252
Cfr10I RCCGGY 4 cut(s) 78, 148, 175, 202
Csp6I GTAC 2 cut(s) 25, 318
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 1 cut(s) 235
CviJI RGCY 6 cut(s) 78, 85, 148, 175, 202, 223
CviKI_1 RGCY 6 cut(s) 78, 85, 148, 175, 202, 223
CviQI GTAC 2 cut(s) 25, 318
DdeI CTNAG 1 cut(s) 256
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 4 cut(s) 76, 146, 173, 200
FaeI CATG 1 cut(s) 238
FaiI YATR 7 cut(s) 216, 230, 236, 243, 248, 289, 343
FatI CATG 1 cut(s) 234
FauI CCCGC 2 cut(s) 148, 175
Fnu4HI GCNGC 4 cut(s) 83, 153, 180, 207
Fsp4HI GCNGC 4 cut(s) 83, 153, 180, 207
FspBI CTAG 1 cut(s) 224
GluI GCNGC 4 cut(s) 83, 153, 180, 207
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 4 cut(s) 78, 148, 175, 202
HapII CCGG 6 cut(s) 79, 149, 163, 176, 190, 203
Hin1II CATG 1 cut(s) 238
HinfI GANTC 3 cut(s) 89, 159, 186
HpaII CCGG 6 cut(s) 79, 149, 163, 176, 190, 203
Hpy188I TCNGA 1 cut(s) 94
Hpy99I CGWCG 2 cut(s) 98, 114
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 3 cut(s) 67, 98, 131
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 199, 247
HpyF3I CTNAG 1 cut(s) 256
Hsp92II CATG 1 cut(s) 238
KpnI GGTACC 1 cut(s) 321
KroI GCCGGC 4 cut(s) 78, 148, 175, 202
KroNI GCCGGC 4 cut(s) 80, 150, 177, 204
Kzo9I GATC 1 cut(s) 6
Lsp1109I GCAGC 2 cut(s) 164, 191
MaeI CTAG 1 cut(s) 224
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 1 cut(s) 16
MluCI AATT 3 cut(s) 279, 311, 324
MlyI GAGTC 3 cut(s) 98, 168, 195
MmeI TCCRAC 1 cut(s) 117
MroNI GCCGGC 4 cut(s) 78, 148, 175, 202
MseI TTAA 1 cut(s) 294
MspA1I CMGCKG 2 cut(s) 155, 182
MspI CCGG 6 cut(s) 79, 149, 163, 176, 190, 203
MwoI GCNNNNNNNGC 3 cut(s) 172, 199, 247
NaeI GCCGGC 4 cut(s) 80, 150, 177, 204
NdeII GATC 1 cut(s) 6
NgoMIV GCCGGC 4 cut(s) 78, 148, 175, 202
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 319
NspI RCATGY 1 cut(s) 238
PaqCI CACCTGC 2 cut(s) 62, 132
PciI ACATGT 1 cut(s) 234
PdiI GCCGGC 4 cut(s) 80, 150, 177, 204
PflMI CCANNNNNTGG 1 cut(s) 327
PkrI GCNGC 4 cut(s) 84, 154, 181, 208
PleI GAGTC 3 cut(s) 97, 167, 194
PpsI GAGTC 3 cut(s) 97, 167, 194
PscI ACATGT 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 319
PsrI GAACNNNNNNTAC 2 cut(s) 8, 40
RsaI GTAC 2 cut(s) 26, 319
RsaNI GTAC 2 cut(s) 25, 318
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 4 cut(s) 83, 153, 180, 207
Sau3AI GATC 1 cut(s) 6
SchI GAGTC 3 cut(s) 98, 168, 195
SetI ASST 4 cut(s) 24, 76, 146, 319
SfcI CTRYAG 1 cut(s) 59
Sse9I AATT 3 cut(s) 279, 311, 324
SsiI CCGC 7 cut(s) 82, 116, 155, 166, 182, 193, 206
SspMI CTAG 1 cut(s) 224
TaaI ACNGT 3 cut(s) 67, 98, 131
TaqI TCGA 1 cut(s) 14
TasI AATT 3 cut(s) 279, 311, 324
TatI WGTACW 1 cut(s) 24
TauI GCSGC 2 cut(s) 85, 209
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseI GCWGC 2 cut(s) 152, 179
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 60
Van91I CCANNNNNTGG 1 cut(s) 327
XceI RCATGY 1 cut(s) 238
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.