Prupe.1G065900_v2.0.a1

GRF zinc finger containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
4707655 .. 4708279
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G065900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 312 bp
ATGAGGCTCGAGTCATCGACCTCAAGTGAACATGGAGGGGCTGTGTTGGGGAGATACTGTAAATGTCGAAAACATGTGTTAATAAGGACGTCTTGGACATATTTAAACCCTGAAAGAAAGTTATATGTTTATGGCACACAAACGATCATTCCTGGGTTGTTAAGGTGTATTAGAATTATGGAGGAGGAACTTCAGTTGCAGAGAGCTGAAGTAAAGAAGATTATGTTTTGGTTTGGCAGCTGCTTGATTGTGAAGATAATTCTGGGGCTTTCCGTGTTATCGAAACCAATTACAGGGACGAGAAATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.82

Weight (kDa)

9.83

Isoelectric Point (pI)

27.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028992)

Species Orthologous Gene IDs
prunus_persica Prupe.1G065900_v2.0.a1 Prupe.6G036100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 176, 228
AcyI GRCGYC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 73
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 2 cut(s) 206, 240
AluI AGCT 2 cut(s) 206, 240
Ama87I CYCGRG 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 237, 240
AvaI CYCGRG 1 cut(s) 8
BbvI GCAGC 2 cut(s) 227, 249
BciT130I CCWGG 1 cut(s) 153
BisI GCNGC 2 cut(s) 238, 241
BlsI GCNGC 2 cut(s) 239, 242
Bme1390I CCNGG 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 152
BsaXI ACNNNNNCTCC 4 cut(s) 27, 43, 57, 73
Bsc4I CCNNNNNNNGG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 227, 249
BsiHKCI CYCGRG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 8
Bsp143I GATC 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 89
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 227, 249
CviAII CATG 2 cut(s) 32, 74
CviJI RGCY 5 cut(s) 7, 41, 206, 240, 268
CviKI_1 RGCY 5 cut(s) 7, 41, 206, 240, 268
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
DraI TTTAAA 1 cut(s) 105
Eco57I CTGAAG 2 cut(s) 176, 228
Eco88I CYCGRG 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 35, 77
FaiI YATR 8 cut(s) 33, 75, 100, 124, 126, 132, 179, 224
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FatI CATG 2 cut(s) 31, 73
Fnu4HI GCNGC 2 cut(s) 238, 241
Fsp4HI GCNGC 2 cut(s) 238, 241
GluI GCNGC 2 cut(s) 238, 241
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 2 cut(s) 35, 77
HinfI GANTC 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 2 cut(s) 35, 77
Kzo9I GATC 1 cut(s) 144
LpnPI CCDG 5 cut(s) 123, 138, 165, 248, 279
Lsp1109I GCAGC 2 cut(s) 227, 249
MaeII ACGT 1 cut(s) 89
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 2 cut(s) 229, 265
MluCI AATT 3 cut(s) 174, 258, 288
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 4 cut(s) 29, 31, 175, 178
MseI TTAA 3 cut(s) 80, 104, 161
MspA1I CMGCKG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
NdeII GATC 1 cut(s) 144
NlaIII CATG 2 cut(s) 35, 77
NspI RCATGY 1 cut(s) 77
PaeR7I CTCGAG 1 cut(s) 8
PciI ACATGT 1 cut(s) 73
PkrI GCNGC 2 cut(s) 239, 242
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PscI ACATGT 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspXI VCTCGAGB 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 240
SaqAI TTAA 3 cut(s) 80, 104, 161
SatI GCNGC 2 cut(s) 238, 241
Sau3AI GATC 1 cut(s) 144
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 153
SetI ASST 5 cut(s) 23, 92, 167, 208, 242
Sfr274I CTCGAG 1 cut(s) 8
SlaI CTCGAG 1 cut(s) 8
SmlI CTYRAG 2 cut(s) 8, 22
SmoI CTYRAG 2 cut(s) 8, 22
Sse9I AATT 3 cut(s) 174, 258, 288
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 92
TaqI TCGA 4 cut(s) 9, 17, 67, 281
TasI AATT 3 cut(s) 174, 258, 288
Tru1I TTAA 3 cut(s) 80, 104, 161
Tru9I TTAA 3 cut(s) 80, 104, 161
TseI GCWGC 2 cut(s) 237, 240
TspGWI ACGGA 1 cut(s) 262
XceI RCATGY 1 cut(s) 77
XhoI CTCGAG 1 cut(s) 8
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.