Prupe.1G080500_v2.0.a1

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0029142
Physical Location & Seq
Forward (+)
5885461 .. 5887160
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G080500.1

Sequence Viewer

Length: 852 bp
ATGGCTTTCTACAATACAACAAAACACCTTCTAAGCCTCACTGCCCTAGTCTTTGTGGCTGGAGCACTGCTAAAAAATGTGACAGCACAAAATTGTGGCTGTGCCCCAGATCTATGTTGTAGCCAGTATGGCTACTGCGGCAGCAGCGAAGACTATTGCGGCCCGGGTTGTCAACAAGGCCCTTGTACTGGCGGTGGCGGCGGCACACCTACCACACCAAGCCCCAGTGGTGGTGGTGGTTCGTCGGTGGCTGATATTGTAACCCAAGAATTCTTCAATGGAATCATTAACCAGGCTCCTTCAGACTGTGTTGGGAAGAACTTCTACACTCGAGATGGTTTTATTAACGCTGTGAACTCATATTCTGACTTAGGTAGACGTGGTTCGGTTGACGAGTCTAAACGGGAAATCGCAGCTTTCTTTGCTCATGCGACTCATGAGACTGGCTATTTTTGCTTCATAGAAGAGAGAGAGGAGTATCGTCAAACCTACTGCGAGCCAAGCACAGACTATCCATGCAACCCCGACAAACAATACTATGGGCGTGGAGCATTACAAATTACAGGGAATAAAAATTATGGACCTGCTGGAAAGAGCATTGGCTTGGACCTTTTAAACTCTCCAGAAACCGTGGCCTCAGACGCTGATGTTGCATTCAAGACTGCCATTTGGTATTGGGTGGTAAATGTTCGTAATGCTTTAAGTCAAGGATTTGGAGCCACAACTCGAGCCATTAATGGTGCTAAGGAATGCGATGGTCAACAACCTGACCTAGTTCAAGCCCGGGCCGCCTTGTACCAGAGTTATTGCAGCCAACTTAATGTTGATCCTGGCGCTAATCTCAGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

284

Amino Acids

30.16

Weight (kDa)

4.88

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029142)

Species Orthologous Gene IDs
prunus_persica Prupe.1G080500_v2.0.a1 Prupe.1G080600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 592
AccI GTMKAC 1 cut(s) 376
AciI CCGC 6 cut(s) 138, 159, 192, 198, 201, 789
AclWI GGATC 1 cut(s) 821
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 2 cut(s) 187, 797
AfiI CCNNNNNNNGG 2 cut(s) 188, 230
AgsI TTSAA 3 cut(s) 277, 658, 779
AjiI CACGTC 1 cut(s) 380
AjnI CCWGG 2 cut(s) 291, 829
AluBI AGCT 1 cut(s) 416
AluI AGCT 1 cut(s) 416
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 1 cut(s) 821
AlwNI CAGNNNCTG 1 cut(s) 644
Ama87I CYCGRG 4 cut(s) 163, 330, 726, 783
AoxI GGCC 4 cut(s) 160, 178, 633, 786
ApeKI GCWGC 4 cut(s) 141, 144, 413, 810
ApoI RAATTY 1 cut(s) 269
AseI ATTAAT 1 cut(s) 735
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 836
AspS9I GGNCC 5 cut(s) 161, 179, 581, 607, 786
AsuC2I CCSGG 4 cut(s) 164, 165, 784, 785
AvaI CYCGRG 4 cut(s) 163, 330, 726, 783
AvaII GGWCC 2 cut(s) 581, 607
BaeGI GKGCMC 1 cut(s) 106
BarI GAAGNNNNNNTAC 2 cut(s) 308, 340
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 4 cut(s) 153, 156, 425, 822
BccI CCATC 2 cut(s) 329, 749
BciT130I CCWGG 2 cut(s) 293, 831
BcnI CCSGG 4 cut(s) 164, 165, 784, 785
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 3 cut(s) 47, 773, 850
BfoI RGCGCY 1 cut(s) 837
BfuAI ACCTGC 1 cut(s) 592
BglI GCCNNNNNGGC 1 cut(s) 129
BglII AGATCT 1 cut(s) 109
BisI GCNGC 9 cut(s) 139, 142, 145, 160, 199, 202, 414, 789, 811
BlsI GCNGC 9 cut(s) 140, 143, 146, 161, 200, 203, 415, 790, 812
Bme1390I CCNGG 6 cut(s) 164, 165, 293, 784, 785, 831
Bme18I GGWCC 2 cut(s) 581, 607
BmeT110I CYCGRG 4 cut(s) 163, 330, 726, 783
BmgBI CACGTC 1 cut(s) 380
BmgT120I GGNCC 5 cut(s) 161, 179, 581, 607, 786
BmiI GGNNCC 2 cut(s) 297, 718
BmrFI CCNGG 6 cut(s) 164, 165, 293, 784, 785, 831
BmrI ACTGGG 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 2 cut(s) 81, 606
Bpu10I CCTNAGC 1 cut(s) 744
BpuMI CCSGG 4 cut(s) 164, 165, 784, 785
BsaJI CCNNGG 3 cut(s) 163, 630, 783
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 230
Bse1I ACTGG 4 cut(s) 124, 193, 225, 448
BseBI CCWGG 2 cut(s) 293, 831
BseDI CCNNGG 3 cut(s) 163, 630, 783
BseLI CCNNNNNNNGG 2 cut(s) 188, 230
BseMII CTCAG 1 cut(s) 651
BseNI ACTGG 4 cut(s) 124, 193, 225, 448
BseRI GAGGAG 1 cut(s) 488
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 4 cut(s) 153, 156, 425, 822
BshFI GGCC 4 cut(s) 162, 180, 635, 788
BsiHKAI GWGCWC 1 cut(s) 67
BsiHKCI CYCGRG 4 cut(s) 163, 330, 726, 783
BsiSI CCGG 2 cut(s) 164, 784
BslI CCNNNNNNNGG 2 cut(s) 188, 230
BsmAI GTCTC 1 cut(s) 434
BsmI GAATGC 2 cut(s) 653, 755
BsnI GGCC 4 cut(s) 162, 180, 635, 788
BsoBI CYCGRG 4 cut(s) 163, 330, 726, 783
Bsp1286I GDGCHC 2 cut(s) 67, 106
Bsp143I GATC 2 cut(s) 109, 826
BspACI CCGC 6 cut(s) 138, 159, 192, 198, 201, 789
BspANI GGCC 4 cut(s) 162, 180, 635, 788
BspCNI CTCAG 1 cut(s) 650
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 297, 718
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 1 cut(s) 821
BsrI ACTGG 4 cut(s) 124, 193, 225, 448
BssECI CCNNGG 3 cut(s) 163, 630, 783
BssMI GATC 2 cut(s) 109, 826
Bst2UI CCWGG 2 cut(s) 293, 831
Bst4CI ACNGT 2 cut(s) 308, 631
Bst6I CTCTTC 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 5 cut(s) 32, 370, 637, 744, 842
BstDSI CCRYGG 1 cut(s) 630
BstH2I RGCGCY 1 cut(s) 837
BstHHI GCGC 1 cut(s) 836
BstKTI GATC 2 cut(s) 112, 829
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 2 cut(s) 109, 826
BstNI CCWGG 2 cut(s) 293, 831
BstSCI CCNGG 6 cut(s) 162, 163, 291, 782, 783, 829
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 4 cut(s) 153, 156, 425, 822
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 4 cut(s) 162, 180, 635, 788
BtgI CCRYGG 1 cut(s) 630
BtgZI GCGATG 1 cut(s) 768
BtrI CACGTC 1 cut(s) 380
BtsI GCAGTG 2 cut(s) 39, 65
BtsIMutI CAGTG 3 cut(s) 39, 65, 232
BveI ACCTGC 1 cut(s) 592
Cac8I GCNNGC 1 cut(s) 497
CaiI CAGNNNCTG 1 cut(s) 644
CciI TCATGA 1 cut(s) 436
CfoI GCGC 1 cut(s) 836
Cfr13I GGNCC 5 cut(s) 161, 179, 581, 607, 786
Cfr9I CCCGGG 2 cut(s) 163, 783
CseI GACGC 1 cut(s) 650
Csp6I GTAC 2 cut(s) 186, 796
CviAII CATG 3 cut(s) 428, 437, 516
CviQI GTAC 2 cut(s) 186, 796
DdeI CTNAG 5 cut(s) 32, 370, 637, 744, 842
DpnI GATC 2 cut(s) 111, 828
DpnII GATC 2 cut(s) 109, 826
DraI TTTAAA 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco47I GGWCC 2 cut(s) 581, 607
Eco57I CTGAAG 1 cut(s) 285
Eco88I CYCGRG 4 cut(s) 163, 330, 726, 783
EcoO109I RGGNCCY 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 291, 829
FaeI CATG 3 cut(s) 431, 440, 519
FaiI YATR 9 cut(s) 115, 129, 361, 429, 438, 461, 517, 540, 579
FatI CATG 3 cut(s) 427, 436, 515
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 9 cut(s) 139, 142, 145, 160, 199, 202, 414, 789, 811
Fsp4HI GCNGC 9 cut(s) 139, 142, 145, 160, 199, 202, 414, 789, 811
FspBI CTAG 3 cut(s) 47, 773, 850
GlaI GCGC 1 cut(s) 835
GluI GCNGC 9 cut(s) 139, 142, 145, 160, 199, 202, 414, 789, 811
GsuI CTGGAG 2 cut(s) 81, 606
HaeII RGCGCY 1 cut(s) 837
HaeIII GGCC 4 cut(s) 162, 180, 635, 788
HapII CCGG 2 cut(s) 164, 784
HgaI GACGC 1 cut(s) 650
HhaI GCGC 1 cut(s) 836
Hin1II CATG 3 cut(s) 431, 440, 519
Hin6I GCGC 1 cut(s) 834
HinP1I GCGC 1 cut(s) 834
HincII GTYRAC 3 cut(s) 173, 391, 761
HindII GTYRAC 3 cut(s) 173, 391, 761
HinfI GANTC 3 cut(s) 282, 395, 433
HpaII CCGG 2 cut(s) 164, 784
Hpy166II GTNNAC 5 cut(s) 173, 355, 377, 391, 761
Hpy188I TCNGA 3 cut(s) 304, 367, 640
Hpy188III TCNNGA 4 cut(s) 332, 437, 623, 658
Hpy8I GTNNAC 5 cut(s) 173, 355, 377, 391, 761
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 38, 309
HpyCH4III ACNGT 2 cut(s) 308, 631
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 3 cut(s) 519, 653, 810
HpyF3I CTNAG 5 cut(s) 32, 370, 637, 744, 842
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 3 cut(s) 431, 440, 519
HspAI GCGC 1 cut(s) 834
Kzo9I GATC 2 cut(s) 109, 826
LmnI GCTCC 4 cut(s) 62, 301, 548, 716
Lsp1109I GCAGC 4 cut(s) 153, 156, 425, 822
MaeI CTAG 3 cut(s) 47, 773, 850
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 2 cut(s) 79, 259
MalI GATC 2 cut(s) 111, 828
MboI GATC 2 cut(s) 109, 826
MboII GAAGA 4 cut(s) 161, 265, 328, 476
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 67, 106
MluCI AATT 4 cut(s) 91, 269, 558, 574
MlyI GAGTC 2 cut(s) 404, 427
MnlI CCTC 3 cut(s) 47, 466, 646
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 6 cut(s) 288, 345, 614, 701, 735, 819
MspI CCGG 2 cut(s) 164, 784
MspR9I CCNGG 6 cut(s) 164, 165, 293, 784, 785, 831
Mva1269I GAATGC 2 cut(s) 653, 755
MvaI CCWGG 2 cut(s) 293, 831
NciI CCSGG 4 cut(s) 164, 165, 784, 785
NdeII GATC 2 cut(s) 109, 826
NlaIII CATG 3 cut(s) 431, 440, 519
NlaIV GGNNCC 2 cut(s) 297, 718
NmuCI GTSAC 1 cut(s) 79
PaeR7I CTCGAG 2 cut(s) 330, 726
PagI TCATGA 1 cut(s) 436
PctI GAATGC 2 cut(s) 653, 755
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 9 cut(s) 140, 143, 146, 161, 200, 203, 415, 790, 812
PleI GAGTC 2 cut(s) 403, 427
PpsI GAGTC 2 cut(s) 403, 427
PshBI ATTAAT 1 cut(s) 735
Psp6I CCWGG 2 cut(s) 291, 829
PspGI CCWGG 2 cut(s) 291, 829
PspN4I GGNNCC 2 cut(s) 297, 718
PspPI GGNCC 5 cut(s) 161, 179, 581, 607, 786
PspXI VCTCGAGB 1 cut(s) 726
PsrI GAACNNNNNNTAC 2 cut(s) 367, 399
PstNI CAGNNNCTG 1 cut(s) 644
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 2 cut(s) 187, 797
RsaNI GTAC 2 cut(s) 186, 796
SaqAI TTAA 6 cut(s) 288, 345, 614, 701, 735, 819
SatI GCNGC 9 cut(s) 139, 142, 145, 160, 199, 202, 414, 789, 811
Sau3AI GATC 2 cut(s) 109, 826
Sau96I GGNCC 5 cut(s) 161, 179, 581, 607, 786
SchI GAGTC 2 cut(s) 404, 427
ScrFI CCNGG 6 cut(s) 164, 165, 293, 784, 785, 831
SduI GDGCHC 2 cut(s) 67, 106
Sfr274I CTCGAG 2 cut(s) 330, 726
SinI GGWCC 2 cut(s) 581, 607
SlaI CTCGAG 2 cut(s) 330, 726
SmaI CCCGGG 2 cut(s) 165, 785
SmlI CTYRAG 2 cut(s) 330, 726
SmoI CTYRAG 2 cut(s) 330, 726
SrfI GCCCGGGC 1 cut(s) 785
Sse9I AATT 4 cut(s) 91, 269, 558, 574
SsiI CCGC 6 cut(s) 138, 159, 192, 198, 201, 789
SspMI CTAG 3 cut(s) 47, 773, 850
StyD4I CCNGG 6 cut(s) 162, 163, 291, 782, 783, 829
TaaI ACNGT 2 cut(s) 308, 631
TaiI ACGT 1 cut(s) 382
TaqI TCGA 2 cut(s) 331, 727
TasI AATT 4 cut(s) 91, 269, 558, 574
TatI WGTACW 1 cut(s) 185
TauI GCSGC 5 cut(s) 141, 162, 201, 204, 791
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 6 cut(s) 288, 345, 614, 701, 735, 819
Tru9I TTAA 6 cut(s) 288, 345, 614, 701, 735, 819
TscAI CASTG 3 cut(s) 46, 72, 232
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 4 cut(s) 141, 144, 413, 810
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 448
TspMI CCCGGG 2 cut(s) 163, 783
TspRI CASTG 3 cut(s) 46, 72, 232
VpaK11BI GGWCC 2 cut(s) 581, 607
VspI ATTAAT 1 cut(s) 735
XapI RAATTY 1 cut(s) 269
XhoI CTCGAG 2 cut(s) 330, 726
XmaI CCCGGG 2 cut(s) 163, 783
XmiI GTMKAC 1 cut(s) 376
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 3 cut(s) 47, 773, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.