Prupe.1G099200_v2.0.a1

HD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011001
Physical Location & Seq
Forward (+)
7921452 .. 7924623
3172 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G099200.1

Sequence Viewer

Length: 738 bp
ATGAGCCGGCTGTTCTGTAAATCGCTCCTCCTAACTCCCTCTCTCGTTTCCGCTCCGATAAGATTCTCATTCAAGTCCATTTCGTCACCGTCTTCCACTTCCAGGGTTCATCGTATGGCCACCGAGGCTTCGTCGTCACCGTCATCCAATGCAGACCGCGAAGCAACCTCTTCTTCTTCGTCTGCCCCCGCTTCCTCTGCCATTGATTTTCTCTCACTCTGTCACCGCCTTAAGACTACGAAACGAGCTGGATGGGTGAAGAGAGATGTAAAGGATCCAGAGTCTATAGCTGACCATATGTACCGAATGGGATTAATGGCTCTGATTGCTTCTGATATCCCCGGTGTCGATCGAGACAAGTGCATAAAAATCGCCCTTGTTCATGATATTGCTGAAGCCATTGTTGGGGACATAACGCCCTCCGATGGGGTTCCGAAGGCTGAGAAGAGTCGAAGAGAGCAAGAGGCATTAGACCACATGTGCAAATTACTTGGTGGAGGGAAAATAGCAGAAGAGATAGGTGAATTGTGGATGGAGTATGAGGGGAATTCCTCGCCAGAAGCTAAAATTGTTAAGGACCTTGACAAGGTTGAGATGATACTTCAAGCCTTGGAATATGAAAAGGATCAAGGAAAGGATTTAGAAGAGTTTTTTCAGTCAACTGCTGGGAAGTTTCAGACTGATTTGGGCAAATCATGGGCTTCAGAGGTAGCATCAAGAAGGAAAAAGCAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HD_3

Protein Analysis

246

Amino Acids

26.86

Weight (kDa)

6.54

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23820 AT2G23820
fragaria_vesca FvH4_4g08640 FvH4_4g08640
malus_domestica MD13G1274800.v1.1
prunus_persica Prupe.1G099200_v2.0.a1 Prupe.1G099200_v2.0.a1
pyrus_communis pycom13g28700
rosa_chinensis RchiOBHm_Chr4g0405131
rosa_laevigata RLG00000008870
rosa_multiflora Rmu_sc0002480.1_g000031 Rmu_ssc0000255.1_g000040
rosa_roxburghii Rroxscaffold_5G00349360
rosa_rugosa Rorug04G0053800 Rorug04G0053900
rosa_samantha Rh4AG129100 Rh4BG122400 Rh4CG136200 Rh4DG122600
rosa_wichuraiana Rw4G010420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 53
AccII CGCG 1 cut(s) 159
AciI CCGC 4 cut(s) 51, 157, 189, 226
AclWI GGATC 3 cut(s) 269, 282, 633
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 2 cut(s) 414, 687
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 5 cut(s) 102, 405, 425, 426, 586
AflII CTTAAG 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 2 cut(s) 73, 605
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 3 cut(s) 248, 290, 563
AluI AGCT 3 cut(s) 248, 290, 563
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 3 cut(s) 269, 282, 633
AoxI GGCC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 547
AseI ATTAAT 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 577
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 5 cut(s) 78, 129, 215, 268, 533
AvaII GGWCC 1 cut(s) 577
BalI TGGCCA 1 cut(s) 119
BamHI GGATCC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 84
BccI CCATC 3 cut(s) 246, 419, 526
BcgI CGANNNNNNTGC 4 cut(s) 342, 352, 376, 386
BciT130I CCWGG 1 cut(s) 103
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 285
BfrI CTTAAG 1 cut(s) 230
BglI GCCNNNNNGGC 1 cut(s) 125
Bme1390I CCNGG 2 cut(s) 103, 342
Bme18I GGWCC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 2 cut(s) 276, 432
BmrFI CCNGG 2 cut(s) 103, 342
BmsI GCATC 1 cut(s) 722
BpiI GAAGAC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 342
BsaJI CCNNGG 4 cut(s) 102, 123, 340, 609
Bsc4I CCNNNNNNNGG 5 cut(s) 102, 405, 425, 426, 586
Bse118I RCCGGY 1 cut(s) 6
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 4 cut(s) 102, 123, 340, 609
BseGI GGATG 3 cut(s) 143, 257, 537
BseLI CCNNNNNNNGG 5 cut(s) 102, 405, 425, 426, 586
BseMII CTCAG 1 cut(s) 432
BseRI GAGGAG 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 665
Bsh1236I CGCG 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 352
BsiSI CCGG 2 cut(s) 7, 342
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 5 cut(s) 102, 405, 425, 426, 586
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 274, 349, 625
BspACI CCGC 4 cut(s) 51, 157, 189, 226
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 433
BspFNI CGCG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 276, 432
BspPI GGATC 3 cut(s) 269, 282, 633
BspTI CTTAAG 1 cut(s) 230
BsrBI CCGCTC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 6
BssAI RCCGGY 1 cut(s) 6
BssECI CCNNGG 4 cut(s) 102, 123, 340, 609
BssMI GATC 3 cut(s) 274, 349, 625
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 90, 141
Bst6I CTCTTC 6 cut(s) 175, 254, 440, 448, 507, 639
BstAFI CTTAAG 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 441
BstENI CCTNNNNNAGG 1 cut(s) 584
BstF5I GGATG 3 cut(s) 143, 257, 537
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 3 cut(s) 277, 352, 628
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 3 cut(s) 274, 349, 625
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 3 cut(s) 125, 197, 326
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 2 cut(s) 101, 340
BstSFI CTRYAG 1 cut(s) 285
BstUI CGCG 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 3 cut(s) 143, 257, 537
Cac8I GCNNGC 1 cut(s) 8
CciI TCATGA 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 577
Csp6I GTAC 1 cut(s) 301
CviAII CATG 3 cut(s) 383, 478, 696
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 1 cut(s) 441
DpnI GATC 3 cut(s) 276, 351, 627
DpnII GATC 3 cut(s) 274, 349, 625
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 6 cut(s) 175, 254, 440, 448, 507, 639
EarI CTCTTC 6 cut(s) 175, 254, 440, 448, 507, 639
Eco130I CCWWGG 1 cut(s) 609
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 577
Eco57I CTGAAG 2 cut(s) 414, 687
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 577
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 101
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 3 cut(s) 386, 481, 699
FaqI GGGAC 1 cut(s) 422
FatI CATG 3 cut(s) 382, 477, 695
FauI CCCGC 1 cut(s) 196
FauNDI CATATG 1 cut(s) 297
FokI GGATG 3 cut(s) 130, 264, 544
GsaI CCCAGC 1 cut(s) 669
HaeIII GGCC 1 cut(s) 119
HapII CCGG 2 cut(s) 7, 342
Hin1II CATG 3 cut(s) 386, 481, 699
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HinfI GANTC 3 cut(s) 63, 281, 448
HpaII CCGG 2 cut(s) 7, 342
HphI GGTGA 5 cut(s) 78, 129, 215, 268, 533
Hpy166II GTNNAC 1 cut(s) 660
Hpy188I TCNGA 7 cut(s) 57, 324, 334, 424, 435, 678, 706
Hpy188III TCNNGA 4 cut(s) 278, 353, 383, 717
Hpy8I GTNNAC 1 cut(s) 660
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 430, 714
HpyCH4III ACNGT 2 cut(s) 90, 141
HpyCH4V TGCA 3 cut(s) 152, 363, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 197, 326
HpyF3I CTNAG 1 cut(s) 441
Hsp92II CATG 3 cut(s) 386, 481, 699
KroI GCCGGC 1 cut(s) 6
KroNI GCCGGC 1 cut(s) 8
Kzo9I GATC 3 cut(s) 274, 349, 625
LmnI GCTCC 2 cut(s) 30, 58
LpnPI CCDG 8 cut(s) 20, 88, 115, 234, 291, 355, 570, 651
LweI GCATC 1 cut(s) 722
MaeIII GTNAC 3 cut(s) 84, 135, 221
MalI GATC 3 cut(s) 276, 351, 627
MbiI CCGCTC 1 cut(s) 53
MboI GATC 3 cut(s) 274, 349, 625
MboII GAAGA 9 cut(s) 84, 162, 165, 168, 271, 457, 465, 524, 656
MflI RGATCY 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 4 cut(s) 485, 524, 547, 567
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 2 cut(s) 290, 457
Mox20I TGGCCA 1 cut(s) 119
MroNI GCCGGC 1 cut(s) 6
MscI TGGCCA 1 cut(s) 119
MseI TTAA 3 cut(s) 231, 314, 573
Msp20I TGGCCA 1 cut(s) 119
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 2 cut(s) 7, 342
MspR9I CCNGG 2 cut(s) 103, 342
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 125, 197, 326
NaeI GCCGGC 1 cut(s) 8
NciI CCSGG 1 cut(s) 342
NdeI CATATG 1 cut(s) 297
NdeII GATC 3 cut(s) 274, 349, 625
NgoMIV GCCGGC 1 cut(s) 6
NlaIII CATG 3 cut(s) 386, 481, 699
NlaIV GGNNCC 2 cut(s) 276, 432
NmuCI GTSAC 3 cut(s) 84, 135, 221
NspI RCATGY 1 cut(s) 481
PagI TCATGA 1 cut(s) 382
PciI ACATGT 1 cut(s) 477
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PdiI GCCGGC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 63
Ple19I CGATCG 1 cut(s) 352
PleI GAGTC 2 cut(s) 289, 456
PpsI GAGTC 2 cut(s) 289, 456
PpuMI RGGWCCY 1 cut(s) 577
PscI ACATGT 1 cut(s) 477
PshBI ATTAAT 1 cut(s) 314
Psp5II RGGWCCY 1 cut(s) 577
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 665
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 276, 432
PspPI GGNCC 1 cut(s) 577
PspPPI RGGWCCY 1 cut(s) 577
PsuI RGATCY 1 cut(s) 274
PvuI CGATCG 1 cut(s) 352
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SaqAI TTAA 3 cut(s) 231, 314, 573
Sau3AI GATC 3 cut(s) 274, 349, 625
Sau96I GGNCC 1 cut(s) 577
SchI GAGTC 2 cut(s) 290, 457
ScrFI CCNGG 2 cut(s) 103, 342
SetI ASST 8 cut(s) 170, 250, 292, 523, 565, 582, 591, 711
SfaNI GCATC 1 cut(s) 722
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 577
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 4 cut(s) 485, 524, 547, 567
SsiI CCGC 4 cut(s) 51, 157, 189, 226
StyD4I CCNGG 2 cut(s) 101, 340
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 2 cut(s) 90, 141
TaqI TCGA 3 cut(s) 348, 352, 451
TasI AATT 4 cut(s) 485, 524, 547, 567
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 3 cut(s) 231, 314, 573
Tru9I TTAA 3 cut(s) 231, 314, 573
TseFI GTSAC 3 cut(s) 84, 135, 221
Tsp45I GTSAC 3 cut(s) 84, 135, 221
TspDTI ATGAA 3 cut(s) 98, 371, 633
Vha464I CTTAAG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 577
VspI ATTAAT 1 cut(s) 314
XagI CCTNNNNNAGG 1 cut(s) 584
XapI RAATTY 1 cut(s) 547
XceI RCATGY 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.