Prupe.1G166000_v2.0.a1

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0029161
Physical Location & Seq
Forward (+)
13458067 .. 13462777
4711 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G166000.1

Sequence Viewer

Length: 1533 bp
ATGACGATCAGAATATATTGGCTCAACTCCAAGGTTGGGGCCGTGGAGACAGAGAGTGCAGCCTACCATCGGATCACAATTACAGGGACAATCCAGAGTGAGCAGAGCCTGTTTACCAGGTCTGAAGATGAAATCTTGGAGGTCATTTCTGGGAACCATGTTCCTGAATATGATACCAGCCTTGATGTTCCTTCTCTTTTCTCCACCGCTCGAAACATCATTTCTGCTTCATTCCAGACCATTGACAATCTTGTGCAGGGCATTCAAGGACTAGATATGGAAACCATAAATGAGAAGTCCCCCGAACCCTACAGCTCCTCATTTTGCCCTCCTATTGAGTCCATTCGTTGTCAGATGGCATATTATAGGGTTCCAAGTGATACTTCCATAGAAGCTTGTACCCTTGAAATACTTAAGAAGTTGTCAAAGTATTCATGGGAAACAAAGGCAGTGCTCGCCCTGGCGGCTTTTGCTTTGGAATACGAAGAATTTGATCAACTTGCCAAGTCAGTGGGGATCAAACGACATGACGTAGTGGTTGAGTTGAACAATCTGATCAAGGCCACATTGGAAGTCATTGATTATCTCCTCAAGTTGGAGTGGCTTTTTCGTAATTATGATGTACCATCATCGGCAAGTTCAACGAAGGATATCCCAGTAATTGTCTACTGGTCGATCCTAACTATTGTAGCTTGTGCGATGACTAAGGTCACTGTTCTTACTAGCTATGAGGAGGACATGCAATACAACCTATCCAAGTTTCTTCAAAAAATCCAGTTTATCCTTGCCAACCTTAGAGGACAGCTTGCAGTCTGCGAAAGAGAAATAGAGGATCAAGGAAAGACCACATCCGAGGGAAAAGAAGAATATTTGACAACGGAATTGATGAAATATACAGAGTTTCACTGGCAAGTCCCTGAAAGCATGCGTAACTTCATACCTTACAGCGCCGAAGTGACCCTTGAGAGCGCCGAAGTGACCCTTGCTGAAGTTATGCATGCTTTCAAGGACTTGGTTTTCCCCGATGATAATGTGCAGCCCCTCATTGATGGATCTACAAAGGAGCAGGGACCATTTATGATAAGTAGACATCGGAGTGCTCAGTTGGAACAGTTTGTTCATTTTGTTTTCGAGCCTAGACATTCCGAAGCTGATATTTCAATTCTCAAACGGGGTTATGAGGAAACGAAAAAAGAGGACAACAATTATAAGATTGTGTGGATCCCCATTGTGGACAAGTGGACTGATGCCCTCCGGGAGAAGTTTGTCGTGTTGATGTCTAAGATGCCATGGTACACATTGCAGTATTTTGAACCTGATGCAGCATGCGTCAGTAAAATCAAGGAGGAGTGGCACTTCAAGGATAAGCCTATGGTGGTCGTGATGGACTCAGAAGGCGAGATTAAAAACACTAATGCACTTCCCTTGATTCAAAAATATGGAATCGAGGCCTTTCCTTTCCATGAGGATGACGAGCACCATGAAAAGAAAGGTCTTTTAGCACGTATTTTTCATAAAGGTGTACGTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

511

Amino Acids

58.75

Weight (kDa)

5.07

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029161)

Species Orthologous Gene IDs
prunus_persica Prupe.1G166000_v2.0.a1 Prupe.1G166000_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1209
AccBSI CCGCTC 1 cut(s) 209
AccI GTMKAC 2 cut(s) 666, 1087
AciI CCGC 2 cut(s) 207, 464
AclWI GGATC 7 cut(s) 80, 524, 670, 840, 1060, 1216, 1229
AcsI RAATTY 1 cut(s) 488
AcuI CTGAAG 2 cut(s) 144, 1008
AfaI GTAC 4 cut(s) 400, 624, 1295, 1524
AfiI CCNNNNNNNGG 4 cut(s) 36, 69, 595, 1231
AflII CTTAAG 1 cut(s) 413
AjnI CCWGG 2 cut(s) 116, 459
AjuI GAANNNNNNNTTGG 2 cut(s) 367, 399
AluBI AGCT 6 cut(s) 315, 395, 692, 726, 805, 1151
AluI AGCT 6 cut(s) 315, 395, 692, 726, 805, 1151
Alw21I GWGCWC 3 cut(s) 456, 1102, 1479
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 7 cut(s) 80, 524, 670, 840, 1060, 1216, 1229
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 3 cut(s) 39, 561, 1449
ApeKI GCWGC 3 cut(s) 59, 1036, 1322
ApoI RAATTY 1 cut(s) 488
AspLEI GCGC 2 cut(s) 950, 971
AspS9I GGNCC 2 cut(s) 39, 1070
AsuC2I CCSGG 1 cut(s) 1256
AvaII GGWCC 1 cut(s) 1070
BamHI GGATCC 1 cut(s) 1221
Bbv12I GWGCWC 3 cut(s) 456, 1102, 1479
BbvI GCAGC 3 cut(s) 71, 1048, 1334
BccI CCATC 5 cut(s) 75, 349, 634, 1043, 1378
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 118, 461
BclI TGATCA 2 cut(s) 493, 555
BcnI CCSGG 1 cut(s) 1256
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 3 cut(s) 272, 723, 1137
BfmI CTRYAG 1 cut(s) 310
BfoI RGCGCY 2 cut(s) 951, 972
BfrI CTTAAG 1 cut(s) 413
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 4 cut(s) 60, 465, 1037, 1323
BlsI GCNGC 4 cut(s) 61, 466, 1038, 1324
Bme1390I CCNGG 3 cut(s) 118, 461, 1256
Bme18I GGWCC 1 cut(s) 1070
BmgT120I GGNCC 2 cut(s) 39, 1070
BmiI GGNNCC 5 cut(s) 40, 155, 372, 1071, 1223
BmrFI CCNGG 3 cut(s) 118, 461, 1256
BmrI ACTGGG 1 cut(s) 650
BmsI GCATC 3 cut(s) 1237, 1275, 1309
BmuI ACTGGG 1 cut(s) 650
BoxI GACNNNNGTC 1 cut(s) 707
BpuEI CTTGAG 2 cut(s) 575, 983
BpuMI CCSGG 1 cut(s) 1256
BsaAI YACGTR 1 cut(s) 1505
BsaJI CCNNGG 5 cut(s) 30, 42, 459, 852, 1289
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 69, 595, 1231
Bse1I ACTGG 4 cut(s) 656, 674, 775, 911
Bse3DI GCAATG 1 cut(s) 1298
BseBI CCWGG 2 cut(s) 118, 461
BseDI CCNNGG 5 cut(s) 30, 42, 459, 852, 1289
BseGI GGATG 2 cut(s) 848, 1474
BseLI CCNNNNNNNGG 4 cut(s) 36, 69, 595, 1231
BseMI GCAATG 1 cut(s) 1298
BseMII CTCAG 2 cut(s) 1115, 1404
BseNI ACTGG 4 cut(s) 656, 674, 775, 911
BseRI GAGGAG 4 cut(s) 307, 578, 746, 1361
BseXI GCAGC 3 cut(s) 71, 1048, 1334
BsgI GTGCAG 3 cut(s) 78, 275, 1055
BshFI GGCC 3 cut(s) 41, 563, 1451
BsiHKAI GWGCWC 3 cut(s) 456, 1102, 1479
BsiSI CCGG 1 cut(s) 1255
BslFI GGGAC 4 cut(s) 100, 283, 899, 1083
BslI CCNNNNNNNGG 4 cut(s) 36, 69, 595, 1231
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 4 cut(s) 100, 283, 899, 1083
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 3 cut(s) 41, 563, 1451
Bsp1286I GDGCHC 3 cut(s) 456, 1102, 1479
Bsp143I GATC 9 cut(s) 6, 72, 493, 516, 555, 675, 832, 1052, 1221
Bsp19I CCATGG 1 cut(s) 1289
BspACI CCGC 2 cut(s) 207, 464
BspANI GGCC 3 cut(s) 41, 563, 1451
BspCNI CTCAG 2 cut(s) 1114, 1403
BspLI GGNNCC 5 cut(s) 40, 155, 372, 1071, 1223
BspPI GGATC 7 cut(s) 80, 524, 670, 840, 1060, 1216, 1229
BspTI CTTAAG 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 1298
BsrI ACTGG 4 cut(s) 656, 674, 775, 911
BssECI CCNNGG 5 cut(s) 30, 42, 459, 852, 1289
BssMI GATC 9 cut(s) 6, 72, 493, 516, 555, 675, 832, 1052, 1221
BssT1I CCWWGG 2 cut(s) 30, 1289
Bst2UI CCWGG 2 cut(s) 118, 461
Bst4CI ACNGT 2 cut(s) 715, 1113
BstAFI CTTAAG 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 1505
BstC8I GCNNGC 5 cut(s) 456, 807, 926, 999, 1327
BstDEI CTNAG 5 cut(s) 705, 794, 1101, 1281, 1390
BstDSI CCRYGG 2 cut(s) 42, 1289
BstF5I GGATG 2 cut(s) 848, 1474
BstH2I RGCGCY 2 cut(s) 951, 972
BstHHI GCGC 2 cut(s) 950, 971
BstKTI GATC 9 cut(s) 9, 75, 496, 519, 558, 678, 835, 1055, 1224
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 9 cut(s) 6, 72, 493, 516, 555, 675, 832, 1052, 1221
BstMWI GCNNNNNNNGC 3 cut(s) 455, 464, 470
BstNI CCWGG 2 cut(s) 118, 461
BstNSI RCATGY 4 cut(s) 742, 928, 1001, 1329
BstPAI GACNNNNGTC 1 cut(s) 707
BstSCI CCNGG 3 cut(s) 116, 459, 1254
BstSFI CTRYAG 1 cut(s) 310
BstV1I GCAGC 3 cut(s) 71, 1048, 1334
BstX2I RGATCY 2 cut(s) 1052, 1221
BstXI CCANNNNNNTGG 1 cut(s) 511
BstYI RGATCY 2 cut(s) 1052, 1221
BsuRI GGCC 3 cut(s) 41, 563, 1451
BtgI CCRYGG 2 cut(s) 42, 1289
BtgZI GCGATG 1 cut(s) 713
BtsCI GGATG 2 cut(s) 848, 1474
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 4 cut(s) 456, 516, 711, 904
Cac8I GCNNGC 5 cut(s) 456, 807, 926, 999, 1327
CaiI CAGNNNCTG 1 cut(s) 109
CfoI GCGC 2 cut(s) 950, 971
Cfr13I GGNCC 2 cut(s) 39, 1070
CseI GACGC 1 cut(s) 1318
CsiI ACCWGGT 1 cut(s) 116
Csp6I GTAC 4 cut(s) 399, 623, 1294, 1523
CviQI GTAC 4 cut(s) 399, 623, 1294, 1523
DdeI CTNAG 5 cut(s) 705, 794, 1101, 1281, 1390
DpnI GATC 9 cut(s) 8, 74, 495, 518, 557, 677, 834, 1054, 1223
DpnII GATC 9 cut(s) 6, 72, 493, 516, 555, 675, 832, 1052, 1221
Eco130I CCWWGG 2 cut(s) 30, 1289
Eco147I AGGCCT 1 cut(s) 1451
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 1070
Eco57I CTGAAG 2 cut(s) 144, 1008
EcoRII CCWGG 2 cut(s) 116, 459
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 2 cut(s) 30, 1289
EcoT22I ATGCAT 1 cut(s) 999
ErhI CCWWGG 2 cut(s) 30, 1289
FalI AAGNNNNNCTT 6 cut(s) 367, 399, 945, 977, 966, 998
FaqI GGGAC 4 cut(s) 100, 283, 899, 1083
FbaI TGATCA 2 cut(s) 493, 555
FblI GTMKAC 2 cut(s) 666, 1087
Fnu4HI GCNGC 4 cut(s) 60, 465, 1037, 1323
FokI GGATG 2 cut(s) 835, 1481
Fsp4HI GCNGC 4 cut(s) 60, 465, 1037, 1323
FspBI CTAG 3 cut(s) 272, 723, 1137
GlaI GCGC 2 cut(s) 949, 970
GluI GCNGC 4 cut(s) 60, 465, 1037, 1323
HaeII RGCGCY 2 cut(s) 951, 972
HaeIII GGCC 3 cut(s) 41, 563, 1451
HapII CCGG 1 cut(s) 1255
HgaI GACGC 1 cut(s) 1318
HhaI GCGC 2 cut(s) 950, 971
Hin6I GCGC 2 cut(s) 948, 969
HinP1I GCGC 2 cut(s) 948, 969
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 4 cut(s) 338, 1388, 1429, 1443
HpaII CCGG 1 cut(s) 1255
Hpy166II GTNNAC 7 cut(s) 114, 667, 1088, 1234, 1242, 1296, 1523
Hpy188I TCNGA 9 cut(s) 11, 72, 124, 354, 555, 853, 1095, 1147, 1393
Hpy188III TCNNGA 4 cut(s) 94, 164, 235, 1381
Hpy8I GTNNAC 7 cut(s) 114, 667, 1088, 1234, 1242, 1296, 1523
Hpy99I CGWCG 1 cut(s) 1530
HpyAV CCTTC 3 cut(s) 201, 640, 1388
HpyCH4III ACNGT 2 cut(s) 715, 1113
HpyCH4IV ACGT 3 cut(s) 531, 1504, 1525
HpyCH4V TGCA 9 cut(s) 59, 256, 742, 809, 997, 1036, 1303, 1322, 1418
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 464, 470
HpyF3I CTNAG 5 cut(s) 705, 794, 1101, 1281, 1390
HpySE526I ACGT 3 cut(s) 531, 1504, 1525
HspAI GCGC 2 cut(s) 948, 969
Ksp22I TGATCA 2 cut(s) 493, 555
Kzo9I GATC 9 cut(s) 6, 72, 493, 516, 555, 675, 832, 1052, 1221
LmnI GCTCC 2 cut(s) 320, 1063
Lsp1109I GCAGC 3 cut(s) 71, 1048, 1334
LweI GCATC 3 cut(s) 1237, 1275, 1309
MabI ACCWGGT 1 cut(s) 116
MaeI CTAG 3 cut(s) 272, 723, 1137
MaeII ACGT 3 cut(s) 531, 1504, 1525
MaeIII GTNAC 4 cut(s) 709, 929, 955, 976
MalI GATC 9 cut(s) 8, 74, 495, 518, 557, 677, 834, 1054, 1223
MbiI CCGCTC 1 cut(s) 209
MboI GATC 9 cut(s) 6, 72, 493, 516, 555, 675, 832, 1052, 1221
MboII GAAGA 4 cut(s) 137, 497, 755, 875
MflI RGATCY 2 cut(s) 1052, 1221
MhlI GDGCHC 3 cut(s) 456, 1102, 1479
MluCI AATT 7 cut(s) 78, 488, 613, 660, 881, 1161, 1204
MlyI GAGTC 2 cut(s) 347, 1382
MmeI TCCRAC 2 cut(s) 576, 1086
Mph1103I ATGCAT 1 cut(s) 999
MseI TTAA 3 cut(s) 414, 1404, 1531
MslI CAYNNNNRTG 3 cut(s) 1095, 1467, 1518
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 1 cut(s) 1255
MspR9I CCNGG 3 cut(s) 118, 461, 1256
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 2 cut(s) 118, 461
MwoI GCNNNNNNNGC 3 cut(s) 455, 464, 470
NciI CCSGG 1 cut(s) 1256
NcoI CCATGG 1 cut(s) 1289
NdeII GATC 9 cut(s) 6, 72, 493, 516, 555, 675, 832, 1052, 1221
NlaIV GGNNCC 5 cut(s) 40, 155, 372, 1071, 1223
NmuCI GTSAC 3 cut(s) 709, 955, 976
NsiI ATGCAT 1 cut(s) 999
NspI RCATGY 4 cut(s) 742, 928, 1001, 1329
PaeI GCATGC 3 cut(s) 928, 1001, 1329
PceI AGGCCT 1 cut(s) 1451
PctI GAATGC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 1429, 1443
PfoI TCCNGGA 1 cut(s) 1254
PkrI GCNGC 4 cut(s) 61, 466, 1038, 1324
PleI GAGTC 2 cut(s) 346, 1382
PpsI GAGTC 2 cut(s) 346, 1382
Ppu21I YACGTR 1 cut(s) 1505
PshAI GACNNNNGTC 1 cut(s) 707
PsiI TTATAA 1 cut(s) 1209
Psp6I CCWGG 2 cut(s) 116, 459
PspGI CCWGG 2 cut(s) 116, 459
PspN4I GGNNCC 5 cut(s) 40, 155, 372, 1071, 1223
PspPI GGNCC 2 cut(s) 39, 1070
PstNI CAGNNNCTG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 1052, 1221
RsaI GTAC 4 cut(s) 400, 624, 1295, 1524
RsaNI GTAC 4 cut(s) 399, 623, 1294, 1523
RseI CAYNNNNRTG 3 cut(s) 1095, 1467, 1518
SaqAI TTAA 3 cut(s) 414, 1404, 1531
SatI GCNGC 4 cut(s) 60, 465, 1037, 1323
Sau3AI GATC 9 cut(s) 6, 72, 493, 516, 555, 675, 832, 1052, 1221
Sau96I GGNCC 2 cut(s) 39, 1070
SchI GAGTC 2 cut(s) 347, 1382
ScrFI CCNGG 3 cut(s) 118, 461, 1256
SduI GDGCHC 3 cut(s) 456, 1102, 1479
SexAI ACCWGGT 1 cut(s) 116
SfaNI GCATC 3 cut(s) 1237, 1275, 1309
SfcI CTRYAG 1 cut(s) 310
SinI GGWCC 1 cut(s) 1070
SmiMI CAYNNNNRTG 3 cut(s) 1095, 1467, 1518
SmlI CTYRAG 3 cut(s) 413, 590, 962
SmoI CTYRAG 3 cut(s) 413, 590, 962
SphI GCATGC 3 cut(s) 928, 1001, 1329
Sse9I AATT 7 cut(s) 78, 488, 613, 660, 881, 1161, 1204
SseBI AGGCCT 1 cut(s) 1451
SsiI CCGC 2 cut(s) 207, 464
SspI AATATT 1 cut(s) 869
SspMI CTAG 3 cut(s) 272, 723, 1137
StuI AGGCCT 1 cut(s) 1451
StyD4I CCNGG 3 cut(s) 116, 459, 1254
StyI CCWWGG 2 cut(s) 30, 1289
TaaI ACNGT 2 cut(s) 715, 1113
TaiI ACGT 3 cut(s) 534, 1507, 1528
TaqI TCGA 4 cut(s) 211, 674, 1131, 1446
TasI AATT 7 cut(s) 78, 488, 613, 660, 881, 1161, 1204
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 2 cut(s) 1429, 1443
Tru1I TTAA 3 cut(s) 414, 1404, 1531
Tru9I TTAA 3 cut(s) 414, 1404, 1531
TscAI CASTG 4 cut(s) 456, 516, 718, 911
TseFI GTSAC 3 cut(s) 709, 955, 976
TseI GCWGC 3 cut(s) 59, 1036, 1322
Tsp45I GTSAC 3 cut(s) 709, 955, 976
TspDTI ATGAA 8 cut(s) 144, 219, 423, 902, 925, 1109, 1497, 1502
TspGWI ACGGA 1 cut(s) 893
TspRI CASTG 4 cut(s) 456, 516, 718, 911
Vha464I CTTAAG 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 1070
XapI RAATTY 1 cut(s) 488
XceI RCATGY 4 cut(s) 742, 928, 1001, 1329
XmiI GTMKAC 2 cut(s) 666, 1087
XspI CTAG 3 cut(s) 272, 723, 1137
Zsp2I ATGCAT 1 cut(s) 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.