Prupe.1G201600_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0024410
Physical Location & Seq
Reverse (-)
19913628 .. 19917352
3725 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G201600.1

Sequence Viewer

Length: 897 bp
ATGAGCCAGGATAGCAAAGTGGCAACCAAAAATATAAAAACCAAAGTTGCAACCGAGTTTTTCTCTTGGAGTTTGGGTGGAAGGTTTCTTAAACCTCAACGACCTCGCTCCACAGTCTACAGGAATACAACACCTTCCACGGAAGCTCTCATGAGTTCTATCAAATTCCATATTCCTCAACTGGGTTTCAAGAAAAACTACCCAGAACCCCACCTACGCTATCGTTTGGCGTTACCTTCTTCTTCTTCAACCCCAAGCCACATCGTCTGTGGCCTCAGAGGGGGACCAAGAAAGCCTTTATGGAGGTCAAGGGTGCTCTCAACTGAAGCCATTCAGGCAGTTCAATCTCTAAAGCTTTCCAAATCAAACCCATCAAAGCTCGAGCAGGTTATGGGCGGTAGGCTCTCCAGGCTCTTGAAAGCTGACTTGTTAGACGCCTTGGCTGAGTTGCAGAGACAAAATGAAGTGGAATTAGCGCTCAAGGTCTTCAAATTTGTGCGGGAGGAAGTATGGTATAAGCCAGATCTATCATTATACTGTAGCATGATCCTATTGTTGGGAAAGAACAAACTGATTGAAATGGCTGAAGAGCTTTTCTCTGGATTAAAGGAAGAAGGATTAGAGTATGACACTAGGGCTTTTACTGAGATGATTGGAGCTTATATACAAGTGGGTATGACCGAAAAGGCAATGGAAACATATGAGTTGATGAAGGCATCAGGTTGTGCGCCAGATAAATTAACGTTTACAATATTGATTAGAAACCTTGAGAAGGTTGGAGAAGAAGAATTGGCGGCTCACATAAAGAAATATTGTGCTGAATATGTAGATTCTCCTGAGAAATTCTTTGAAGAAGTTGAAAGAAAACATAGGACGAGATCGTTCAATCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

299

Amino Acids

34.02

Weight (kDa)

9.31

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024410)

Species Orthologous Gene IDs
malus_domestica MD04G1047000.v1.1
prunus_persica Prupe.1G201600_v2.0.a1
pyrus_communis pycom04g04080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AccI GTMKAC 1 cut(s) 117
AciI CCGC 3 cut(s) 396, 499, 794
AclI AACGTT 1 cut(s) 743
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 3 cut(s) 164, 491, 842
AcuI CTGAAG 2 cut(s) 345, 606
AcyI GRCGYC 1 cut(s) 435
AfeI AGCGCT 1 cut(s) 477
AfiI CCNNNNNNNGG 4 cut(s) 182, 280, 556, 772
AgsI TTSAA 9 cut(s) 190, 249, 344, 418, 490, 578, 851, 860, 886
AjnI CCWGG 2 cut(s) 6, 407
AluBI AGCT 6 cut(s) 146, 355, 379, 422, 592, 659
AluI AGCT 6 cut(s) 146, 355, 379, 422, 592, 659
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 448
AlwI GGATC 1 cut(s) 541
Ama87I CYCGRG 1 cut(s) 380
Aor51HI AGCGCT 1 cut(s) 477
AoxI GGCC 1 cut(s) 271
ApoI RAATTY 3 cut(s) 164, 491, 842
Asp700I GAANNNNTTC 1 cut(s) 330
AspLEI GCGC 2 cut(s) 478, 730
AspS9I GGNCC 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 318
BccI CCATC 1 cut(s) 379
BciT130I CCWGG 2 cut(s) 8, 409
BcoDI GTCTC 1 cut(s) 448
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 2 cut(s) 118, 538
BfoI RGCGCY 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 376
BglI GCCNNNNNGGC 1 cut(s) 335
BglII AGATCT 1 cut(s) 523
BisI GCNGC 1 cut(s) 795
BlsI GCNGC 1 cut(s) 796
Bme1390I CCNGG 2 cut(s) 8, 409
Bme18I GGWCC 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 8, 409
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 725
BmuI ACTGGG 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 478
BplI GAGNNNNNCTC 4 cut(s) 47, 79, 581, 613
BpmI CTGGAG 1 cut(s) 391
BpuEI CTTGAG 2 cut(s) 464, 788
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 2 cut(s) 138, 438
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 4 cut(s) 182, 280, 556, 772
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 2 cut(s) 8, 409
BseDI CCNNGG 2 cut(s) 138, 438
BseLI CCNNNNNNNGG 4 cut(s) 182, 280, 556, 772
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 4 cut(s) 289, 435, 636, 828
BseNI ACTGG 1 cut(s) 186
BshFI GGCC 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 4 cut(s) 182, 280, 556, 772
BsmAI GTCTC 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 3 cut(s) 523, 546, 878
BspACI CCGC 3 cut(s) 396, 499, 794
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 4 cut(s) 288, 436, 637, 829
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 1 cut(s) 541
BspQI GCTCTTC 1 cut(s) 582
BsrDI GCAATG 1 cut(s) 696
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 138, 438
BssMI GATC 3 cut(s) 523, 546, 878
BssNI GRCGYC 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 8, 409
Bst4CI ACNGT 2 cut(s) 115, 539
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 1 cut(s) 435
BstDEI CTNAG 4 cut(s) 275, 444, 645, 837
BstDSI CCRYGG 1 cut(s) 138
BstENI CCTNNNNNAGG 1 cut(s) 770
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 2 cut(s) 478, 730
BstKTI GATC 3 cut(s) 526, 549, 881
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 3 cut(s) 523, 546, 878
BstMWI GCNNNNNNNGC 3 cut(s) 12, 335, 409
BstNI CCWGG 2 cut(s) 8, 409
BstSCI CCNGG 2 cut(s) 6, 407
BstSFI CTRYAG 2 cut(s) 118, 538
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 376
CciI TCATGA 1 cut(s) 150
CfoI GCGC 2 cut(s) 478, 730
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 443
CviAII CATG 2 cut(s) 151, 544
DdeI CTNAG 4 cut(s) 275, 444, 645, 837
DpnI GATC 3 cut(s) 525, 548, 880
DpnII GATC 3 cut(s) 523, 546, 878
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 284
Eco47III AGCGCT 1 cut(s) 477
Eco57I CTGAAG 2 cut(s) 345, 606
Eco88I CYCGRG 1 cut(s) 380
EcoNI CCTNNNNNAGG 1 cut(s) 770
EcoRII CCWGG 2 cut(s) 6, 407
EcoT14I CCWWGG 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 2 cut(s) 154, 547
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FaqI GGGAC 1 cut(s) 297
FatI CATG 2 cut(s) 150, 543
FauI CCCGC 1 cut(s) 492
FauNDI CATATG 1 cut(s) 700
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 795
Fsp4HI GCNGC 1 cut(s) 795
FspBI CTAG 1 cut(s) 633
GlaI GCGC 2 cut(s) 477, 729
GluI GCNGC 1 cut(s) 795
GsuI CTGGAG 1 cut(s) 391
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 1 cut(s) 273
HgaI GACGC 1 cut(s) 443
HhaI GCGC 2 cut(s) 478, 730
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 2 cut(s) 154, 547
Hin6I GCGC 2 cut(s) 476, 728
HinP1I GCGC 2 cut(s) 476, 728
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 1 cut(s) 830
Hpy166II GTNNAC 2 cut(s) 118, 747
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 5 cut(s) 151, 190, 415, 600, 836
Hpy8I GTNNAC 2 cut(s) 118, 747
HpyAV CCTTC 6 cut(s) 75, 144, 246, 608, 706, 766
HpyCH4III ACNGT 2 cut(s) 115, 539
HpyCH4IV ACGT 1 cut(s) 743
HpyCH4V TGCA 2 cut(s) 50, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 335, 409
HpyF3I CTNAG 4 cut(s) 275, 444, 645, 837
HpySE526I ACGT 1 cut(s) 743
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 2 cut(s) 154, 547
HspAI GCGC 2 cut(s) 476, 728
Kzo9I GATC 3 cut(s) 523, 546, 878
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 2 cut(s) 113, 656
LweI GCATC 1 cut(s) 725
MaeI CTAG 1 cut(s) 633
MaeII ACGT 1 cut(s) 743
MaeIII GTNAC 1 cut(s) 231
MalI GATC 3 cut(s) 525, 548, 880
MboI GATC 3 cut(s) 523, 546, 878
MboII GAAGA 9 cut(s) 231, 234, 237, 478, 599, 623, 794, 797, 863
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 6 cut(s) 164, 470, 491, 737, 788, 842
MmeI TCCRAC 1 cut(s) 757
MnlI CCTC 7 cut(s) 105, 114, 186, 272, 284, 297, 496
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 3 cut(s) 90, 605, 740
MspR9I CCNGG 2 cut(s) 8, 409
MvaI CCWGG 2 cut(s) 8, 409
MwoI GCNNNNNNNGC 3 cut(s) 12, 335, 409
NdeI CATATG 1 cut(s) 700
NdeII GATC 3 cut(s) 523, 546, 878
NlaIII CATG 2 cut(s) 154, 547
NlaIV GGNNCC 1 cut(s) 285
PaeR7I CTCGAG 1 cut(s) 380
PagI TCATGA 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 582
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 830
PkrI GCNGC 1 cut(s) 796
Psp1406I AACGTT 1 cut(s) 743
Psp6I CCWGG 2 cut(s) 6, 407
PspGI CCWGG 2 cut(s) 6, 407
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 284
PspXI VCTCGAGB 1 cut(s) 380
PsrI GAACNNNNNNTAC 2 cut(s) 198, 230
PsuI RGATCY 1 cut(s) 523
SapI GCTCTTC 1 cut(s) 582
SaqAI TTAA 3 cut(s) 90, 605, 740
SatI GCNGC 1 cut(s) 795
Sau3AI GATC 3 cut(s) 523, 546, 878
Sau96I GGNCC 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 8, 409
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 1 cut(s) 725
SfcI CTRYAG 2 cut(s) 118, 538
Sfr274I CTCGAG 1 cut(s) 380
SinI GGWCC 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 380
SmlI CTYRAG 3 cut(s) 380, 479, 767
SmoI CTYRAG 3 cut(s) 380, 479, 767
Sse9I AATT 6 cut(s) 164, 470, 491, 737, 788, 842
SsiI CCGC 3 cut(s) 396, 499, 794
SspI AATATT 2 cut(s) 753, 812
SspMI CTAG 1 cut(s) 633
StyD4I CCNGG 2 cut(s) 6, 407
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 115, 539
TaiI ACGT 1 cut(s) 746
TaqI TCGA 1 cut(s) 381
TaqII GACCGA 1 cut(s) 695
TasI AATT 6 cut(s) 164, 470, 491, 737, 788, 842
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 1 cut(s) 830
Tru1I TTAA 3 cut(s) 90, 605, 740
Tru9I TTAA 3 cut(s) 90, 605, 740
TspDTI ATGAA 2 cut(s) 477, 725
TspGWI ACGGA 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 284
XagI CCTNNNNNAGG 1 cut(s) 770
XapI RAATTY 3 cut(s) 164, 491, 842
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XhoI CTCGAG 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.