Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0029164

Physical Location & Seq

Genomic Coordinates Reverse (-)

24331770 .. 24333260

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G230100.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCTGGGCTAAATCACAACCACCTCAGCCACTCACGATGTCGCTGCGAGCTCGGAAAGGTCTGTAGATTTCGAGTTTTCCGACGCCGTTTCCGACGACTCCGGCGTTTGTCTCCAGTTCGGGAGGGAGGACGAGGAGGTGGAGGACTTTGCCTCAATTTCTCTTCTCTTTTATCCATCTATTTTTACTTCACAATTCATTCGCAAACCACACCTTTCAGGTTAACTCAAGGCTTTGGCTTTGGAGACAGAGGAACCAACCAACCAAGCTATGGCTACATATTTCAAAATTTAAGCAACCAAAACTTGTTGAACCCCTCCTATGCAGGGGATGAGAAACTTGCTTCTTATCCTGAACCCCCCGCCAAAATGATGATGTATCTGAAACAAGCTTCATATGCTACTGGATCCTACTCTGAAGTCTTGTCCGGCGGCTCTTTCTCTCCTCACAAATATGCTGATTCTGATGGTGGCAGGAATGAAATGATGTTGTTAGCTTCCAGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

170

Amino Acids

19.02

Weight (kDa)

9.92

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0029164)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G230100_v2.0.a1 Prupe.1G230400_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	272
AciI	CCGC	2 cut(s)	363, 432
AclWI	GGATC	2 cut(s)	402, 415
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	272, 327
AgsI	TTSAA	2 cut(s)	287, 313
AluBI	AGCT	4 cut(s)	52, 270, 392, 497
AluI	AGCT	4 cut(s)	52, 270, 392, 497
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	117, 240
AlwI	GGATC	2 cut(s)	402, 415
ApeKI	GCWGC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	289
BamHI	GGATCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	54
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	2 cut(s)	185, 461
BceAI	ACGGC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BcoDI	GTCTC	2 cut(s)	117, 240
BfmI	CTRYAG	1 cut(s)	64
BisI	GCNGC	2 cut(s)	46, 433
BlsI	GCNGC	2 cut(s)	47, 434
BmiI	GGNNCC	2 cut(s)	256, 409
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 327
Bse1I	ACTGG	3 cut(s)	116, 409, 501
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	2 cut(s)	272, 327
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	3 cut(s)	116, 409, 501
BseRI	GAGGAG	2 cut(s)	150, 435
BseXI	GCAGC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	103, 429
BslI	CCNNNNNNNGG	2 cut(s)	272, 327
BsmAI	GTCTC	2 cut(s)	117, 240
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	407
BspACI	CCGC	2 cut(s)	363, 432
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	256, 409
BspPI	GGATC	2 cut(s)	402, 415
BsrI	ACTGG	3 cut(s)	116, 409, 501
BssMI	GATC	1 cut(s)	407
BssNI	GRCGYC	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	1 cut(s)	410
BstMAI	GTCTC	2 cut(s)	117, 240
BstMBI	GATC	1 cut(s)	407
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	50
CseI	GACGC	1 cut(s)	93
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	1 cut(s)	409
DpnII	GATC	1 cut(s)	407
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	54
FaiI	YATR	6 cut(s)	273, 281, 324, 397, 399, 456
FauI	CCCGC	1 cut(s)	370
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	46, 433
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	46, 433
GluI	GCNGC	2 cut(s)	46, 433
GsuI	CTGGAG	1 cut(s)	99
HapII	CCGG	2 cut(s)	103, 429
HgaI	GACGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	2 cut(s)	99, 461
HpaI	GTTAAC	1 cut(s)	225
HpaII	CCGG	2 cut(s)	103, 429
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	6 cut(s)	56, 83, 95, 384, 418, 466
Hpy188III	TCNNGA	3 cut(s)	36, 122, 353
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	2 cut(s)	87, 99
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	85
KspAI	GTTAAC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	407
LpnPI	CCDG	8 cut(s)	116, 129, 205, 312, 366, 390, 442, 460
Lsp1109I	GCAGC	1 cut(s)	32
MalI	GATC	1 cut(s)	409
MboI	GATC	1 cut(s)	407
MboII	GAAGA	1 cut(s)	156
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	3 cut(s)	157, 195, 289
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	2 cut(s)	106, 118
MseI	TTAA	2 cut(s)	224, 293
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	2 cut(s)	103, 429
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	1 cut(s)	407
NlaIV	GGNNCC	2 cut(s)	256, 409
PcsI	WCGNNNNNNNCGW	3 cut(s)	79, 91, 103
PfeI	GAWTC	1 cut(s)	461
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	47, 434
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	256, 409
PsuI	RGATCY	1 cut(s)	407
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	224, 293
SatI	GCNGC	2 cut(s)	46, 433
Sau3AI	GATC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	9 cut(s)	27, 54, 63, 142, 217, 224, 272, 394, 499
SfcI	CTRYAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	3 cut(s)	157, 195, 289
SsiI	CCGC	2 cut(s)	363, 432
SstI	GAGCTC	1 cut(s)	54
TaqI	TCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	157, 195, 289
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	224, 293
Tru9I	TTAA	2 cut(s)	224, 293
TseI	GCWGC	1 cut(s)	45
TspDTI	ATGAA	3 cut(s)	188, 384, 495
Van91I	CCANNNNNTGG	1 cut(s)	272
XapI	RAATTY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.