Prupe.1G274100_v2.0.a1

Protein of unknown function (DUF616)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
28023913 .. 28026667
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G274100.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 375 bp
ATGAACTTCACACTGTTTTCACTAGAGTTCATTGACCAAGAGGGAATACCTTCCCTTAGTAATATATATGAACCTAGATTTGGAGGACATCAGACACTTGAGGAAAGAGAGCAATCTTTCTTTGCGAAGAATCAAACTCTACATTGTGGATTTATCAAAGGACCCCCTGGATTCTCAAGCACTGGATTTGATATAGATGCGAAGGACAAGGCATACAAGAACGAGTGTAAGATTGCAGTATCTTCTTGCATTTTTGGAAGCTCTGACTTTCTTAGGAGGCCTACAAGCAAAAAGGACTGTGAGCGCAGAGCACTAGTAAAGCTATTCCGGCATAGGGAAGAGCCATCTCCTCCAGGACCTCCACCTGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

14.0

Weight (kDa)

7.68

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029134)

Species Orthologous Gene IDs
prunus_persica Prupe.1G273700_v2.0.a1 Prupe.1G274100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 80, 334
AhlI ACTAGT 1 cut(s) 313
AjnI CCWGG 2 cut(s) 166, 352
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 2 cut(s) 261, 322
AluI AGCT 2 cut(s) 261, 322
Alw21I GWGCWC 1 cut(s) 313
AoxI GGCC 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 306
AspS9I GGNCC 2 cut(s) 161, 356
AvaII GGWCC 2 cut(s) 161, 356
Bbv12I GWGCWC 1 cut(s) 313
BccI CCATC 1 cut(s) 352
BciT130I CCWGG 2 cut(s) 168, 354
BcuI ACTAGT 1 cut(s) 313
BfaI CTAG 3 cut(s) 23, 75, 314
Bme1390I CCNGG 2 cut(s) 168, 354
Bme18I GGWCC 2 cut(s) 161, 356
BmgT120I GGNCC 2 cut(s) 161, 356
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 168, 354
BmsI GCATC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 119, 160
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 334
Bse1I ACTGG 1 cut(s) 187
BseBI CCWGG 2 cut(s) 168, 354
BseDI CCNNGG 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 80, 334
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 339
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 80, 334
BsnI GGCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 313
BspANI GGCC 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 163
BspQI GCTCTTC 1 cut(s) 333
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 166
Bst2UI CCWGG 2 cut(s) 168, 354
Bst4CI ACNGT 2 cut(s) 15, 299
Bst6I CTCTTC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 56, 272
BstHHI GCGC 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstNI CCWGG 2 cut(s) 168, 354
BstSCI CCNGG 2 cut(s) 166, 352
BsuRI GGCC 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 11, 180
CfoI GCGC 1 cut(s) 306
Cfr13I GGNCC 2 cut(s) 161, 356
CviJI RGCY 4 cut(s) 261, 280, 322, 343
CviKI_1 RGCY 4 cut(s) 261, 280, 322, 343
DdeI CTNAG 2 cut(s) 56, 272
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 280
Eco47I GGWCC 2 cut(s) 161, 356
EcoO109I RGGNCCY 2 cut(s) 161, 356
EcoRII CCWGG 2 cut(s) 166, 352
FaiI YATR 6 cut(s) 65, 67, 69, 194, 214, 333
FspBI CTAG 3 cut(s) 23, 75, 314
GlaI GCGC 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 280
HapII CCGG 1 cut(s) 328
HhaI GCGC 1 cut(s) 306
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HinfI GANTC 2 cut(s) 130, 171
HpaII CCGG 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 93, 265
HpyAV CCTTC 2 cut(s) 60, 196
HpyCH4III ACNGT 2 cut(s) 15, 299
HpyCH4V TGCA 2 cut(s) 236, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 2 cut(s) 56, 272
HspAI GCGC 1 cut(s) 304
LguI GCTCTTC 1 cut(s) 333
LpnPI CCDG 6 cut(s) 153, 168, 180, 339, 341, 366
LweI GCATC 1 cut(s) 187
MaeI CTAG 3 cut(s) 23, 75, 314
MaeIII GTNAC 1 cut(s) 367
MboII GAAGA 3 cut(s) 139, 234, 350
MhlI GDGCHC 1 cut(s) 313
MnlI CCTC 6 cut(s) 34, 77, 94, 270, 360, 369
MroXI GAANNNNTTC 1 cut(s) 49
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 2 cut(s) 168, 354
MvaI CCWGG 2 cut(s) 168, 354
MwoI GCNNNNNNNGC 1 cut(s) 328
NlaIV GGNNCC 1 cut(s) 163
PceI AGGCCT 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 130, 171
PfoI TCCNGGA 1 cut(s) 352
PpuMI RGGWCCY 2 cut(s) 161, 356
Psp5II RGGWCCY 2 cut(s) 161, 356
Psp6I CCWGG 2 cut(s) 166, 352
PspGI CCWGG 2 cut(s) 166, 352
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 2 cut(s) 161, 356
PspPPI RGGWCCY 2 cut(s) 161, 356
SapI GCTCTTC 1 cut(s) 333
Sau96I GGNCC 2 cut(s) 161, 356
ScrFI CCNGG 2 cut(s) 168, 354
SduI GDGCHC 1 cut(s) 313
SetI ASST 6 cut(s) 52, 76, 263, 324, 361, 367
SfaNI GCATC 1 cut(s) 187
SinI GGWCC 2 cut(s) 161, 356
SmlI CTYRAG 2 cut(s) 98, 175
SmoI CTYRAG 2 cut(s) 98, 175
SpeI ACTAGT 1 cut(s) 313
SseBI AGGCCT 1 cut(s) 280
SspMI CTAG 3 cut(s) 23, 75, 314
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 2 cut(s) 166, 352
TaaI ACNGT 2 cut(s) 15, 299
TfiI GAWTC 2 cut(s) 130, 171
TscAI CASTG 2 cut(s) 18, 187
TspDTI ATGAA 3 cut(s) 17, 19, 84
TspRI CASTG 2 cut(s) 18, 187
VpaK11BI GGWCC 2 cut(s) 161, 356
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 3 cut(s) 23, 75, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.