Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0024597

Physical Location & Seq

Genomic Coordinates Reverse (-)

29550219 .. 29550816

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G300800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGAAACCAAACGGAGGCAGCAGCGGCTCGGACAGTGGCGGTAGGGGTTTGCCTGTTGAAAGGGGAAAAGGTGTTGTTGGGACGACGCCGTTGCTCTCTTGGCTACTCCACCTTTTCCCTACCTGGTGGCCACCTCGAGCTCAGTGAGAGCTTCGAGGAGTGCGCAGCAAGAGAATTGAAGGAAGAAACTGGTTTAGACATTGACAAGAAGAGGATGGAGTTTCTGACAGCCAGAACAAACGAGCTGCTCCTAGAGGGAGGCAAGCCATGCCAGTACGCGTCCGTTTGCATGAGAGCGGTGATGGAACATGGAGATGGAGAGCCCCAAAATGTGGAGCCAGAAGTGTGTGATGGTTGGGATTGGTATGAGTGGGACAACCTTCCCAAACCACTCTTTCGTCCTCTGCACAATGCGGTGTTGGCAGGATTTAATCCTTTTCGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

150

Amino Acids

16.59

Weight (kDa)

5.14

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024597)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G300800_v2.0.a1 Prupe.1G303100_v2.0.a1 Prupe.1G303300_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccBSI	CCGCTC	1 cut(s)	299
AccII	CGCG	1 cut(s)	281
AciI	CCGC	4 cut(s)	26, 41, 299, 416
AcoI	YGGCCR	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	16, 334
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	61, 181
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	3 cut(s)	142, 153, 247
AluI	AGCT	3 cut(s)	142, 153, 247
Alw21I	GWGCWC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	4 cut(s)	20, 23, 167, 247
AspLEI	GCGC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	132
BanII	GRGCYC	2 cut(s)	144, 327
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	4 cut(s)	32, 35, 179, 234
BccI	CCATC	4 cut(s)	211, 298, 311, 347
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	1 cut(s)	126
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	5 cut(s)	21, 24, 27, 168, 248
BlsI	GCNGC	5 cut(s)	22, 25, 28, 169, 249
Bme1390I	CCNGG	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 334
Bse1I	ACTGG	2 cut(s)	196, 274
BseBI	CCWGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	16, 334
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	196, 274
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	4 cut(s)	32, 35, 179, 234
BsgI	GTGCAG	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	137
BslFI	GGGAC	2 cut(s)	96, 389
BslI	CCNNNNNNNGG	2 cut(s)	16, 334
BsmFI	GGGAC	2 cut(s)	96, 389
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	144, 327
BspACI	CCGC	4 cut(s)	26, 41, 299, 416
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	339
BsrBI	CCGCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	196, 274
BssNI	GRCGYC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	222
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 102, 270, 422
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	4 cut(s)	32, 35, 179, 234
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	42, 151
Cac8I	GCNNGC	1 cut(s)	266
CfoI	GCGC	1 cut(s)	167
CseI	GACGC	2 cut(s)	96, 270
CsiI	ACCWGGT	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	4 cut(s)	270, 292, 311, 447
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	144, 327
Eco53kI	GAGCTC	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	124
EcoT38I	GRGCYC	2 cut(s)	144, 327
FaeI	CATG	4 cut(s)	273, 295, 314, 450
FaiI	YATR	5 cut(s)	271, 293, 312, 369, 448
FaqI	GGGAC	2 cut(s)	96, 389
FatI	CATG	4 cut(s)	269, 291, 310, 446
Fnu4HI	GCNGC	5 cut(s)	21, 24, 27, 168, 248
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	2 cut(s)	144, 327
Fsp4HI	GCNGC	5 cut(s)	21, 24, 27, 168, 248
FspBI	CTAG	1 cut(s)	254
FspI	TGCGCA	1 cut(s)	166
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	5 cut(s)	21, 24, 27, 168, 248
HaeIII	GGCC	1 cut(s)	132
HgaI	GACGC	2 cut(s)	96, 270
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	4 cut(s)	273, 295, 314, 450
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HphI	GGTGA	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	33, 228
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	2 cut(s)	175, 392
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	291, 409, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 102, 270, 422
HpyF3I	CTNAG	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	4 cut(s)	273, 295, 314, 450
HspAI	GCGC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	255, 337
LpnPI	CCDG	8 cut(s)	68, 111, 138, 177, 247, 287, 354, 411
Lsp1109I	GCAGC	4 cut(s)	32, 35, 179, 234
MabI	ACCWGGT	1 cut(s)	124
MaeI	CTAG	1 cut(s)	254
MbiI	CCGCTC	1 cut(s)	299
MboII	GAAGA	2 cut(s)	197, 223
MhlI	GDGCHC	2 cut(s)	144, 327
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	1 cut(s)	176
MluI	ACGCGT	1 cut(s)	279
MluNI	TGGCCA	1 cut(s)	132
MnlI	CCTC	7 cut(s)	10, 146, 151, 207, 250, 254, 414
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	4 cut(s)	26, 102, 270, 422
NlaIII	CATG	4 cut(s)	273, 295, 314, 450
NlaIV	GGNNCC	1 cut(s)	339
NsbI	TGCGCA	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	5 cut(s)	22, 25, 28, 169, 249
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	339
PspXI	VCTCGAGB	1 cut(s)	137
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	5 cut(s)	21, 24, 27, 168, 248
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	144, 327
SetI	ASST	8 cut(s)	75, 116, 127, 138, 144, 155, 249, 384
SexAI	ACCWGGT	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	4 cut(s)	26, 41, 299, 416
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	138, 156
TasI	AATT	1 cut(s)	176
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	2 cut(s)	42, 151
TseI	GCWGC	4 cut(s)	20, 23, 167, 247
TspGWI	ACGGA	2 cut(s)	29, 274
TspRI	CASTG	2 cut(s)	42, 151
Van91I	CCANNNNNTGG	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	137
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.