chromatin binding
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD16G1035300.v1.1 |
| prunus_persica | Prupe.1G319400_v2.0.a1 Prupe.1G319400_v2.0.a1 Prupe.1G319400_v2.0.a1 Prupe.1G319400_v2.0.a1 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3286 |
| Acc16I | TGCGCA | 1 cut(s) | 506 |
| Acc36I | ACCTGC | 2 cut(s) | 1519, 2990 |
| AccB1I | GGYRCC | 1 cut(s) | 3118 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1998, 2369 |
| AccII | CGCG | 3 cut(s) | 429, 1285, 1463 |
| AccIII | TCCGGA | 2 cut(s) | 58, 650 |
| AclI | AACGTT | 1 cut(s) | 891 |
| AclWI | GGATC | 3 cut(s) | 152, 1639, 2686 |
| AcsI | RAATTY | 2 cut(s) | 1654, 1972 |
| AcuI | CTGAAG | 1 cut(s) | 248 |
| AdeI | CACNNNGTG | 1 cut(s) | 1429 |
| AfaI | GTAC | 3 cut(s) | 34, 41, 2686 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 638, 1998, 2369, 2825 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 532, 3187 |
| AjnI | CCWGG | 6 cut(s) | 15, 355, 2404, 2580, 2727, 3039 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1639, 1671, 1844, 1876, 2522, 2554 |
| AleI | CACNNNNGTG | 1 cut(s) | 1871 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 896, 928 |
| Alw21I | GWGCWC | 3 cut(s) | 294, 852, 3275 |
| Alw26I | GTCTC | 8 cut(s) | 314, 1006, 1494, 1876, 2049, 2435, 2718, 3195 |
| AlwI | GGATC | 3 cut(s) | 152, 1639, 2686 |
| Ama87I | CYCGRG | 1 cut(s) | 2820 |
| Aor13HI | TCCGGA | 2 cut(s) | 58, 650 |
| AoxI | GGCC | 3 cut(s) | 2473, 2836, 2950 |
| ApeKI | GCWGC | 8 cut(s) | 452, 798, 1017, 1333, 2504, 2942, 3064, 3067 |
| ApoI | RAATTY | 2 cut(s) | 1654, 1972 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2462 |
| AspA2I | CCTAGG | 1 cut(s) | 2795 |
| AspLEI | GCGC | 3 cut(s) | 507, 1465, 3220 |
| AspS9I | GGNCC | 5 cut(s) | 555, 1106, 1706, 2473, 2781 |
| AsuC2I | CCSGG | 2 cut(s) | 2821, 2822 |
| AsuHPI | GGTGA | 8 cut(s) | 1300, 1609, 1635, 2406, 2533, 3138, 3208, 3247 |
| AsuNHI | GCTAGC | 1 cut(s) | 1745 |
| AvaI | CYCGRG | 1 cut(s) | 2820 |
| AvaII | GGWCC | 4 cut(s) | 555, 1106, 1706, 2781 |
| AvrII | CCTAGG | 1 cut(s) | 2795 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1656, 1689, 2676, 2709 |
| BanI | GGYRCC | 1 cut(s) | 3118 |
| BanII | GRGCYC | 2 cut(s) | 2983, 3275 |
| BauI | CACGAG | 1 cut(s) | 1750 |
| BbsI | GAAGAC | 2 cut(s) | 960, 1178 |
| Bbv12I | GWGCWC | 3 cut(s) | 294, 852, 3275 |
| BbvCI | CCTCAGC | 1 cut(s) | 1224 |
| BbvI | GCAGC | 8 cut(s) | 439, 810, 1029, 1320, 2516, 2954, 3076, 3079 |
| BccI | CCATC | 7 cut(s) | 365, 1426, 1777, 2081, 2309, 2371, 2458 |
| BciT130I | CCWGG | 6 cut(s) | 17, 357, 2406, 2582, 2729, 3041 |
| BciVI | GTATCC | 5 cut(s) | 226, 922, 2261, 2446, 2536 |
| BclI | TGATCA | 1 cut(s) | 2284 |
| BcnI | CCSGG | 2 cut(s) | 2821, 2822 |
| BcoDI | GTCTC | 8 cut(s) | 314, 1006, 1494, 1876, 2049, 2435, 2718, 3195 |
| BfaI | CTAG | 8 cut(s) | 737, 1740, 1746, 2208, 2280, 2343, 2796, 3045 |
| BfmI | CTRYAG | 5 cut(s) | 559, 1137, 1199, 1334, 2220 |
| BfoI | RGCGCY | 1 cut(s) | 3221 |
| BfuAI | ACCTGC | 2 cut(s) | 1519, 2990 |
| BfuI | GTATCC | 5 cut(s) | 226, 922, 2261, 2446, 2536 |
| BglII | AGATCT | 1 cut(s) | 1259 |
| BlnI | CCTAGG | 1 cut(s) | 2795 |
| Bme1390I | CCNGG | 8 cut(s) | 17, 357, 2406, 2582, 2729, 2821, 2822, 3041 |
| Bme18I | GGWCC | 4 cut(s) | 555, 1106, 1706, 2781 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 532, 3187 |
| BmeT110I | CYCGRG | 1 cut(s) | 2820 |
| BmgT120I | GGNCC | 5 cut(s) | 555, 1106, 1706, 2473, 2781 |
| BmiI | GGNNCC | 4 cut(s) | 2474, 2982, 3012, 3120 |
| BmrFI | CCNGG | 8 cut(s) | 17, 357, 2406, 2582, 2729, 2821, 2822, 3041 |
| BmrI | ACTGGG | 3 cut(s) | 1047, 1957, 2008 |
| BmtI | GCTAGC | 1 cut(s) | 1749 |
| BmuI | ACTGGG | 3 cut(s) | 1047, 1957, 2008 |
| BpiI | GAAGAC | 2 cut(s) | 960, 1178 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2965, 2997, 3257, 3289, 3259, 3291 |
| BpmI | CTGGAG | 5 cut(s) | 378, 920, 1702, 2967, 3116 |
| Bpu10I | CCTNAGC | 3 cut(s) | 147, 1224, 2091 |
| BpuEI | CTTGAG | 5 cut(s) | 578, 1817, 2040, 2291, 2344 |
| BpuMI | CCSGG | 2 cut(s) | 2821, 2822 |
| Bsa29I | ATCGAT | 1 cut(s) | 2181 |
| BsaBI | GATNNNNATC | 3 cut(s) | 615, 1630, 2072 |
| BsaI | GGTCTC | 2 cut(s) | 1876, 2718 |
| BsaJI | CCNNGG | 9 cut(s) | 442, 1992, 2404, 2405, 2728, 2795, 2819, 2820, 2953 |
| BsaWI | WCCGGW | 2 cut(s) | 58, 650 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 135, 165, 3298 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 638, 1998, 2369, 2825 |
| Bse3DI | GCAATG | 2 cut(s) | 632, 2544 |
| Bse8I | GATNNNNATC | 3 cut(s) | 615, 1630, 2072 |
| BseAI | TCCGGA | 2 cut(s) | 58, 650 |
| BseBI | CCWGG | 6 cut(s) | 17, 357, 2406, 2582, 2729, 3041 |
| BseCI | ATCGAT | 1 cut(s) | 2181 |
| BseDI | CCNNGG | 9 cut(s) | 442, 1992, 2404, 2405, 2728, 2795, 2819, 2820, 2953 |
| BseGI | GGATG | 4 cut(s) | 298, 402, 1446, 2049 |
| BseJI | GATNNNNATC | 3 cut(s) | 615, 1630, 2072 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 638, 1998, 2369, 2825 |
| BseMI | GCAATG | 2 cut(s) | 632, 2544 |
| BseRI | GAGGAG | 3 cut(s) | 77, 846, 3283 |
| BseXI | GCAGC | 8 cut(s) | 439, 810, 1029, 1320, 2516, 2954, 3076, 3079 |
| BseYI | CCCAGC | 1 cut(s) | 3214 |
| Bsh1236I | CGCG | 3 cut(s) | 429, 1285, 1463 |
| BshFI | GGCC | 3 cut(s) | 2475, 2838, 2952 |
| BshNI | GGYRCC | 1 cut(s) | 3118 |
| BshVI | ATCGAT | 1 cut(s) | 2181 |
| BsiHKAI | GWGCWC | 3 cut(s) | 294, 852, 3275 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2820 |
| BsiSI | CCGG | 3 cut(s) | 59, 651, 2821 |
| BslFI | GGGAC | 3 cut(s) | 1263, 1434, 2016 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 638, 1998, 2369, 2825 |
| BsmAI | GTCTC | 8 cut(s) | 314, 1006, 1494, 1876, 2049, 2435, 2718, 3195 |
| BsmFI | GGGAC | 3 cut(s) | 1263, 1434, 2016 |
| BsmI | GAATGC | 3 cut(s) | 190, 768, 1991 |
| BsnI | GGCC | 3 cut(s) | 2475, 2838, 2952 |
| Bso31I | GGTCTC | 2 cut(s) | 1876, 2718 |
| BsoBI | CYCGRG | 1 cut(s) | 2820 |
| Bsp1286I | GDGCHC | 4 cut(s) | 294, 852, 2983, 3275 |
| Bsp13I | TCCGGA | 2 cut(s) | 58, 650 |
| Bsp19I | CCATGG | 1 cut(s) | 1992 |
| BspANI | GGCC | 3 cut(s) | 2475, 2838, 2952 |
| BspDI | ATCGAT | 1 cut(s) | 2181 |
| BspEI | TCCGGA | 2 cut(s) | 58, 650 |
| BspFNI | CGCG | 3 cut(s) | 429, 1285, 1463 |
| BspLI | GGNNCC | 4 cut(s) | 2474, 2982, 3012, 3120 |
| BspMAI | CTGCAG | 2 cut(s) | 1338, 2224 |
| BspMI | ACCTGC | 2 cut(s) | 1519, 2990 |
| BspOI | GCTAGC | 1 cut(s) | 1749 |
| BspPI | GGATC | 3 cut(s) | 152, 1639, 2686 |
| BspQI | GCTCTTC | 1 cut(s) | 442 |
| BspT107I | GGYRCC | 1 cut(s) | 3118 |
| BspTNI | GGTCTC | 2 cut(s) | 1876, 2718 |
| BsrDI | GCAATG | 2 cut(s) | 632, 2544 |
| BssECI | CCNNGG | 9 cut(s) | 442, 1992, 2404, 2405, 2728, 2795, 2819, 2820, 2953 |
| BssSI | CACGAG | 1 cut(s) | 1750 |
| BssT1I | CCWWGG | 4 cut(s) | 442, 1992, 2795, 2953 |
| Bst2BI | CACGAG | 1 cut(s) | 1750 |
| Bst2UI | CCWGG | 6 cut(s) | 17, 357, 2406, 2582, 2729, 3041 |
| Bst6I | CTCTTC | 1 cut(s) | 442 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2620 |
| BstC8I | GCNNGC | 7 cut(s) | 1338, 1747, 2143, 2601, 2885, 3203, 3222 |
| BstDSI | CCRYGG | 1 cut(s) | 1992 |
| BstEII | GGTNACC | 1 cut(s) | 351 |
| BstF5I | GGATG | 4 cut(s) | 298, 402, 1446, 2049 |
| BstFNI | CGCG | 3 cut(s) | 429, 1285, 1463 |
| BstH2I | RGCGCY | 1 cut(s) | 3221 |
| BstHHI | GCGC | 3 cut(s) | 507, 1465, 3220 |
| BstMAI | GTCTC | 8 cut(s) | 314, 1006, 1494, 1876, 2049, 2435, 2718, 3195 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 152, 1282, 1346, 2510, 2620 |
| BstNI | CCWGG | 6 cut(s) | 17, 357, 2406, 2582, 2729, 3041 |
| BstNSI | RCATGY | 1 cut(s) | 3140 |
| BstPI | GGTNACC | 1 cut(s) | 351 |
| BstSCI | CCNGG | 8 cut(s) | 15, 355, 2404, 2580, 2727, 2819, 2820, 3039 |
| BstSFI | CTRYAG | 5 cut(s) | 559, 1137, 1199, 1334, 2220 |
| BstUI | CGCG | 3 cut(s) | 429, 1285, 1463 |
| BstV1I | GCAGC | 8 cut(s) | 439, 810, 1029, 1320, 2516, 2954, 3076, 3079 |
| BstV2I | GAAGAC | 2 cut(s) | 960, 1178 |
| BstX2I | RGATCY | 2 cut(s) | 1259, 1631 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2735 |
| BstYI | RGATCY | 2 cut(s) | 1259, 1631 |
| Bsu15I | ATCGAT | 1 cut(s) | 2181 |
| BsuI | GTATCC | 5 cut(s) | 226, 922, 2261, 2446, 2536 |
| BsuRI | GGCC | 3 cut(s) | 2475, 2838, 2952 |
| BsuTUI | ATCGAT | 1 cut(s) | 2181 |
| BtgI | CCRYGG | 1 cut(s) | 1992 |
| BtsCI | GGATG | 4 cut(s) | 298, 402, 1446, 2049 |
| BtsIMutI | CAGTG | 6 cut(s) | 224, 568, 729, 984, 1060, 1208 |
| BveI | ACCTGC | 2 cut(s) | 1519, 2990 |
| Cac8I | GCNNGC | 7 cut(s) | 1338, 1747, 2143, 2601, 2885, 3203, 3222 |
| CfoI | GCGC | 3 cut(s) | 507, 1465, 3220 |
| Cfr13I | GGNCC | 5 cut(s) | 555, 1106, 1706, 2473, 2781 |
| Cfr9I | CCCGGG | 1 cut(s) | 2820 |
| ClaI | ATCGAT | 1 cut(s) | 2181 |
| CseI | GACGC | 1 cut(s) | 1265 |
| Csp6I | GTAC | 3 cut(s) | 33, 40, 2685 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 615, 650 |
| CviQI | GTAC | 3 cut(s) | 33, 40, 2685 |
| DraIII | CACNNNGTG | 1 cut(s) | 1429 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3286 |
| DriI | GACNNNNNGTC | 2 cut(s) | 532, 3187 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3286 |
| Eam1104I | CTCTTC | 1 cut(s) | 442 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 532, 3187 |
| EarI | CTCTTC | 1 cut(s) | 442 |
| Ecl136II | GAGCTC | 1 cut(s) | 3273 |
| Eco130I | CCWWGG | 4 cut(s) | 442, 1992, 2795, 2953 |
| Eco24I | GRGCYC | 2 cut(s) | 2983, 3275 |
| Eco31I | GGTCTC | 2 cut(s) | 1876, 2718 |
| Eco32I | GATATC | 1 cut(s) | 2412 |
| Eco47I | GGWCC | 4 cut(s) | 555, 1106, 1706, 2781 |
| Eco53kI | GAGCTC | 1 cut(s) | 3273 |
| Eco57I | CTGAAG | 1 cut(s) | 248 |
| Eco88I | CYCGRG | 1 cut(s) | 2820 |
| Eco91I | GGTNACC | 1 cut(s) | 351 |
| EcoICRI | GAGCTC | 1 cut(s) | 3273 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2781 |
| EcoO65I | GGTNACC | 1 cut(s) | 351 |
| EcoRII | CCWGG | 6 cut(s) | 15, 355, 2404, 2580, 2727, 3039 |
| EcoRV | GATATC | 1 cut(s) | 2412 |
| EcoT14I | CCWWGG | 4 cut(s) | 442, 1992, 2795, 2953 |
| EcoT38I | GRGCYC | 2 cut(s) | 2983, 3275 |
| ErhI | CCWWGG | 4 cut(s) | 442, 1992, 2795, 2953 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 515, 547, 1095, 1127 |
| FaqI | GGGAC | 3 cut(s) | 1263, 1434, 2016 |
| FauI | CCCGC | 2 cut(s) | 1278, 2253 |
| FauNDI | CATATG | 3 cut(s) | 304, 501, 2498 |
| FbaI | TGATCA | 1 cut(s) | 2284 |
| FokI | GGATG | 4 cut(s) | 285, 389, 1453, 2036 |
| FriOI | GRGCYC | 2 cut(s) | 2983, 3275 |
| FspAI | RTGCGCAY | 1 cut(s) | 506 |
| FspBI | CTAG | 8 cut(s) | 737, 1740, 1746, 2208, 2280, 2343, 2796, 3045 |
| FspI | TGCGCA | 1 cut(s) | 506 |
| GlaI | GCGC | 3 cut(s) | 506, 1464, 3219 |
| GsaI | CCCAGC | 1 cut(s) | 3218 |
| GsuI | CTGGAG | 5 cut(s) | 378, 920, 1702, 2967, 3116 |
| HaeII | RGCGCY | 1 cut(s) | 3221 |
| HaeIII | GGCC | 3 cut(s) | 2475, 2838, 2952 |
| HapII | CCGG | 3 cut(s) | 59, 651, 2821 |
| HgaI | GACGC | 1 cut(s) | 1265 |
| HhaI | GCGC | 3 cut(s) | 507, 1465, 3220 |
| Hin6I | GCGC | 3 cut(s) | 505, 1463, 3218 |
| HinP1I | GCGC | 3 cut(s) | 505, 1463, 3218 |
| HincII | GTYRAC | 3 cut(s) | 1541, 1549, 3173 |
| HindII | GTYRAC | 3 cut(s) | 1541, 1549, 3173 |
| HindIII | AAGCTT | 1 cut(s) | 2117 |
| HpaII | CCGG | 3 cut(s) | 59, 651, 2821 |
| HphI | GGTGA | 8 cut(s) | 1300, 1609, 1635, 2406, 2533, 3138, 3208, 3247 |
| Hpy166II | GTNNAC | 9 cut(s) | 377, 484, 1541, 1549, 1643, 2244, 2541, 3146, 3173 |
| Hpy8I | GTNNAC | 9 cut(s) | 377, 484, 1541, 1549, 1643, 2244, 2541, 3146, 3173 |
| HpyAV | CCTTC | 9 cut(s) | 171, 664, 930, 1232, 1305, 2397, 2427, 2942, 3176 |
| HpyCH4IV | ACGT | 2 cut(s) | 891, 2038 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 152, 1282, 1346, 2510, 2620 |
| HpySE526I | ACGT | 2 cut(s) | 891, 2038 |
| HspAI | GCGC | 3 cut(s) | 505, 1463, 3218 |
| Kpn2I | TCCGGA | 2 cut(s) | 58, 650 |
| Ksp22I | TGATCA | 1 cut(s) | 2284 |
| LguI | GCTCTTC | 1 cut(s) | 442 |
| Lsp1109I | GCAGC | 8 cut(s) | 439, 810, 1029, 1320, 2516, 2954, 3076, 3079 |
| MaeI | CTAG | 8 cut(s) | 737, 1740, 1746, 2208, 2280, 2343, 2796, 3045 |
| MaeII | ACGT | 2 cut(s) | 891, 2038 |
| MaeIII | GTNAC | 7 cut(s) | 351, 716, 835, 1573, 1609, 1822, 2767 |
| MfeI | CAATTG | 1 cut(s) | 2560 |
| MflI | RGATCY | 2 cut(s) | 1259, 1631 |
| MhlI | GDGCHC | 4 cut(s) | 294, 852, 2983, 3275 |
| MmeI | TCCRAC | 2 cut(s) | 500, 1942 |
| MroI | TCCGGA | 2 cut(s) | 58, 650 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2462 |
| MslI | CAYNNNNRTG | 4 cut(s) | 303, 1580, 1871, 2774 |
| MspA1I | CMGCKG | 2 cut(s) | 1228, 2369 |
| MspI | CCGG | 3 cut(s) | 59, 651, 2821 |
| MspR9I | CCNGG | 8 cut(s) | 17, 357, 2406, 2582, 2729, 2821, 2822, 3041 |
| MunI | CAATTG | 1 cut(s) | 2560 |
| Mva1269I | GAATGC | 3 cut(s) | 190, 768, 1991 |
| MvaI | CCWGG | 6 cut(s) | 17, 357, 2406, 2582, 2729, 3041 |
| MvnI | CGCG | 3 cut(s) | 429, 1285, 1463 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 152, 1282, 1346, 2510, 2620 |
| NciI | CCSGG | 2 cut(s) | 2821, 2822 |
| NcoI | CCATGG | 1 cut(s) | 1992 |
| NdeI | CATATG | 3 cut(s) | 304, 501, 2498 |
| NheI | GCTAGC | 1 cut(s) | 1745 |
| NlaIV | GGNNCC | 4 cut(s) | 2474, 2982, 3012, 3120 |
| NmuCI | GTSAC | 2 cut(s) | 1573, 2767 |
| NsbI | TGCGCA | 1 cut(s) | 506 |
| NspI | RCATGY | 1 cut(s) | 3140 |
| OliI | CACNNNNGTG | 1 cut(s) | 1871 |
| PasI | CCCWGGG | 1 cut(s) | 2405 |
| PciSI | GCTCTTC | 1 cut(s) | 442 |
| PctI | GAATGC | 3 cut(s) | 190, 768, 1991 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2462 |
| PflFI | GACNNNGTC | 1 cut(s) | 2427 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1998, 2369 |
| PfoI | TCCNGGA | 1 cut(s) | 2580 |
| PpuMI | RGGWCCY | 1 cut(s) | 2781 |
| Psp124BI | GAGCTC | 1 cut(s) | 3275 |
| Psp1406I | AACGTT | 1 cut(s) | 891 |
| Psp5II | RGGWCCY | 1 cut(s) | 2781 |
| Psp6I | CCWGG | 6 cut(s) | 15, 355, 2404, 2580, 2727, 3039 |
| PspEI | GGTNACC | 1 cut(s) | 351 |
| PspFI | CCCAGC | 1 cut(s) | 3214 |
| PspGI | CCWGG | 6 cut(s) | 15, 355, 2404, 2580, 2727, 3039 |
| PspN4I | GGNNCC | 4 cut(s) | 2474, 2982, 3012, 3120 |
| PspPI | GGNCC | 5 cut(s) | 555, 1106, 1706, 2473, 2781 |
| PspPPI | RGGWCCY | 1 cut(s) | 2781 |
| PstI | CTGCAG | 2 cut(s) | 1338, 2224 |
| PsuI | RGATCY | 2 cut(s) | 1259, 1631 |
| PsyI | GACNNNGTC | 1 cut(s) | 2427 |
| PvuII | CAGCTG | 1 cut(s) | 2369 |
| RsaI | GTAC | 3 cut(s) | 34, 41, 2686 |
| RsaNI | GTAC | 3 cut(s) | 33, 40, 2685 |
| RseI | CAYNNNNRTG | 4 cut(s) | 303, 1580, 1871, 2774 |
| SacI | GAGCTC | 1 cut(s) | 3275 |
| SapI | GCTCTTC | 1 cut(s) | 442 |
| Sau96I | GGNCC | 5 cut(s) | 555, 1106, 1706, 2473, 2781 |
| ScrFI | CCNGG | 8 cut(s) | 17, 357, 2406, 2582, 2729, 2821, 2822, 3041 |
| SduI | GDGCHC | 4 cut(s) | 294, 852, 2983, 3275 |
| SfcI | CTRYAG | 5 cut(s) | 559, 1137, 1199, 1334, 2220 |
| SinI | GGWCC | 4 cut(s) | 555, 1106, 1706, 2781 |
| SmaI | CCCGGG | 1 cut(s) | 2822 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 303, 1580, 1871, 2774 |
| SmlI | CTYRAG | 5 cut(s) | 593, 1796, 2055, 2306, 2323 |
| SmoI | CTYRAG | 5 cut(s) | 593, 1796, 2055, 2306, 2323 |
| SspI | AATATT | 2 cut(s) | 2461, 3031 |
| SspMI | CTAG | 8 cut(s) | 737, 1740, 1746, 2208, 2280, 2343, 2796, 3045 |
| SstI | GAGCTC | 1 cut(s) | 3275 |
| StyD4I | CCNGG | 8 cut(s) | 15, 355, 2404, 2580, 2727, 2819, 2820, 3039 |
| StyI | CCWWGG | 4 cut(s) | 442, 1992, 2795, 2953 |
| TaiI | ACGT | 2 cut(s) | 894, 2041 |
| TaqI | TCGA | 6 cut(s) | 184, 536, 929, 2160, 2181, 2379 |
| TauI | GCSGC | 4 cut(s) | 2552, 2575, 2890, 3124 |
| TscAI | CASTG | 6 cut(s) | 231, 568, 736, 984, 1060, 1208 |
| TseFI | GTSAC | 2 cut(s) | 1573, 2767 |
| TseI | GCWGC | 8 cut(s) | 452, 798, 1017, 1333, 2504, 2942, 3064, 3067 |
| Tsp45I | GTSAC | 2 cut(s) | 1573, 2767 |
| TspGWI | ACGGA | 1 cut(s) | 82 |
| TspMI | CCCGGG | 1 cut(s) | 2820 |
| TspRI | CASTG | 6 cut(s) | 231, 568, 736, 984, 1060, 1208 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2427 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1998, 2369 |
| VpaK11BI | GGWCC | 4 cut(s) | 555, 1106, 1706, 2781 |
| XapI | RAATTY | 2 cut(s) | 1654, 1972 |
| XceI | RCATGY | 1 cut(s) | 3140 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1903 |
| XmaI | CCCGGG | 1 cut(s) | 2820 |
| XmaJI | CCTAGG | 1 cut(s) | 2795 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2462 |
| XspI | CTAG | 8 cut(s) | 737, 1740, 1746, 2208, 2280, 2343, 2796, 3045 |