Prupe.1G359700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018387
Physical Location & Seq
Reverse (-)
33208859 .. 33209438
580 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G359700.1

Sequence Viewer

Length: 351 bp
ATGGATGCTGCTGCTGATCATCGGTCTCCAAGCTTCATGACATTGAAGGAATTGGTTCCGTTGCAGCCATGGAAGACACCACCCCCTCCATTTTCTCAAAGTCGATGTGGGAAGTACACCAAGGTGAAGGATCCAATACCCAAAGATGGGGCAAGAGTTGTATTTTGGGCACCAAAAACTCGGCAGAGGGAAGCTGACGACTATGATATAGATGTTGAAATTCCGTACCAAGGCTTATTTGAGTTCATTGACAAGTTTGTTATCCGCAAAGTTAGGCTGTGGATTGACCGGCTACTTGGGGAGATATTGTGCTTACCAAAGTATGATGCATACCATTACCATAGTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.67

Weight (kDa)

8.89

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018387)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g37971
prunus_persica Prupe.1G359700_v2.0.a1
rosa_laevigata RLG00000011064
rosa_multiflora Rmu_ssc0000114.1_g000018
rosa_roxburghii Rroxscaffold_7G00164530
rosa_rugosa Rorug06G0323300.1
rosa_samantha Rh6AG437600 Rh6BG465500 Rh6CG449600 Rh6DG436500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AciI CCGC 1 cut(s) 265
AclWI GGATC 2 cut(s) 125, 138
AcsI RAATTY 1 cut(s) 219
AfaI GTAC 2 cut(s) 116, 227
AfiI CCNNNNNNNGG 3 cut(s) 146, 147, 230
AgsI TTSAA 2 cut(s) 46, 218
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 2 cut(s) 33, 194
AluI AGCT 2 cut(s) 33, 194
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 2 cut(s) 125, 138
ApeKI GCWGC 3 cut(s) 8, 11, 64
ApoI RAATTY 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 172
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 140
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 30
BisI GCNGC 3 cut(s) 9, 12, 65
BlsI GCNGC 3 cut(s) 10, 13, 66
BmiI GGNNCC 3 cut(s) 57, 132, 171
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 68, 120, 229
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 147, 230
Bse118I RCCGGY 1 cut(s) 288
BseDI CCNNGG 3 cut(s) 68, 120, 229
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 3 cut(s) 146, 147, 230
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 289
BslI CCNNNNNNNGG 3 cut(s) 146, 147, 230
BsmAI GTCTC 1 cut(s) 30
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 16, 130
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 1 cut(s) 265
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 3 cut(s) 57, 132, 171
BspPI GGATC 2 cut(s) 125, 138
BspT107I GGYRCC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 288
BssAI RCCGGY 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 68, 120, 229
BssMI GATC 2 cut(s) 16, 130
BssT1I CCWWGG 3 cut(s) 68, 120, 229
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 19, 133
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 16, 130
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 1 cut(s) 10
CciI TCATGA 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 288
Csp6I GTAC 2 cut(s) 115, 226
CviAII CATG 2 cut(s) 37, 69
CviJI RGCY 6 cut(s) 33, 67, 194, 234, 277, 292
CviKI_1 RGCY 6 cut(s) 33, 67, 194, 234, 277, 292
CviQI GTAC 2 cut(s) 115, 226
DpnI GATC 2 cut(s) 18, 132
DpnII GATC 2 cut(s) 16, 130
Eco130I CCWWGG 3 cut(s) 68, 120, 229
Eco31I GGTCTC 1 cut(s) 30
EcoT14I CCWWGG 3 cut(s) 68, 120, 229
EcoT22I ATGCAT 1 cut(s) 331
ErhI CCWWGG 3 cut(s) 68, 120, 229
FaeI CATG 2 cut(s) 40, 72
FaiI YATR 7 cut(s) 38, 70, 204, 209, 324, 331, 342
FatI CATG 2 cut(s) 36, 68
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 9, 12, 65
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 9, 12, 65
GluI GCNGC 3 cut(s) 9, 12, 65
HapII CCGG 1 cut(s) 289
Hin1II CATG 2 cut(s) 40, 72
HindIII AAGCTT 1 cut(s) 31
HpaII CCGG 1 cut(s) 289
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 117
HpyAV CCTTC 2 cut(s) 40, 121
HpyCH4V TGCA 2 cut(s) 64, 329
Hsp92II CATG 2 cut(s) 40, 72
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 2 cut(s) 16, 130
LpnPI CCDG 1 cut(s) 302
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 316
MalI GATC 2 cut(s) 18, 132
MboI GATC 2 cut(s) 16, 130
MboII GAAGA 1 cut(s) 85
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 2 cut(s) 50, 219
MnlI CCTC 2 cut(s) 96, 180
Mph1103I ATGCAT 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 1 cut(s) 289
NcoI CCATGG 1 cut(s) 68
NdeII GATC 2 cut(s) 16, 130
NlaIII CATG 2 cut(s) 40, 72
NlaIV GGNNCC 3 cut(s) 57, 132, 171
NmeAIII GCCGAG 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 331
OliI CACNNNNGTG 1 cut(s) 122
PagI TCATGA 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 54
PkrI GCNGC 3 cut(s) 10, 13, 66
PspN4I GGNNCC 3 cut(s) 57, 132, 171
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 2 cut(s) 116, 227
RsaNI GTAC 2 cut(s) 115, 226
RseI CAYNNNNRTG 1 cut(s) 122
SatI GCNGC 3 cut(s) 9, 12, 65
Sau3AI GATC 2 cut(s) 16, 130
SduI GDGCHC 1 cut(s) 172
SetI ASST 3 cut(s) 35, 126, 196
SfaNI GCATC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 2 cut(s) 50, 219
SsiI CCGC 1 cut(s) 265
StyI CCWWGG 3 cut(s) 68, 120, 229
TaqI TCGA 1 cut(s) 103
TaqII GACCGA 1 cut(s) 12
TasI AATT 2 cut(s) 50, 219
TatI WGTACW 1 cut(s) 114
TseI GCWGC 3 cut(s) 8, 11, 64
TspDTI ATGAA 2 cut(s) 25, 235
TspGWI ACGGA 2 cut(s) 48, 213
XapI RAATTY 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.