Prupe.1G396400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
35148324 .. 35148920
597 bp
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UTR
Exon/CDS
Intron
Prupe.1G396400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 420 bp
ATGGCGCAAGAAGATGATCAGAGCAAGTGGAAAGTCAAGAAGGAGCTTACGACATTAGATGTCGTAAATCATTTCGTCTATTTAGACATGAAGGACGTGGAGGAACATATATTGAGGCATTGGAACAAAGACAAGATCATAAGAGTAAGAACAGATTCCACAAAGATCATGGTTAAGGATGTTGACACCAACACCACACACGCAATTCATTTTCGCATTTACGATTACAAGCCAGAGGCTAATGCCACGCTAGAAGGCGAATGGGGTTGGGATTTTGTTACGCGCAGAGGACTTGGTGCTGGTGACCAGATTGGGATTTATTACGAAAAAACTGGTGAATCTGAATTCTGTTTTAGCGTCTTGAAAAAGGTTGCACCTTCGAGTGCATCATCCATACGACCGCTCTCGCAAACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

16.11

Weight (kDa)

6.2

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0026702)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26805
prunus_persica Prupe.1G396400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 403
AccII CGCG 1 cut(s) 283
AciI CCGC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 344
AgsI TTSAA 1 cut(s) 364
AjiI CACGTC 1 cut(s) 97
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
ApoI RAATTY 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 154
AspLEI GCGC 2 cut(s) 7, 285
AsuHPI GGTGA 2 cut(s) 314, 347
BclI TGATCA 1 cut(s) 16
BfaI CTAG 1 cut(s) 251
BmgBI CACGTC 1 cut(s) 97
BmsI GCATC 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 337
BseGI GGATG 2 cut(s) 184, 389
BseNI ACTGG 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 283
Bsh1285I CGRYCG 1 cut(s) 401
BsiEI CGRYCG 1 cut(s) 401
Bsp143I GATC 3 cut(s) 16, 135, 165
BspACI CCGC 1 cut(s) 401
BspFNI CGCG 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 403
BsrI ACTGG 1 cut(s) 337
BssMI GATC 3 cut(s) 16, 135, 165
BstEII GGTNACC 1 cut(s) 302
BstF5I GGATG 2 cut(s) 184, 389
BstFNI CGCG 1 cut(s) 283
BstHHI GCGC 2 cut(s) 7, 285
BstKTI GATC 3 cut(s) 19, 138, 168
BstMBI GATC 3 cut(s) 16, 135, 165
BstMCI CGRYCG 1 cut(s) 401
BstPI GGTNACC 1 cut(s) 302
BstUI CGCG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 184, 389
CfoI GCGC 2 cut(s) 7, 285
CseI GACGC 1 cut(s) 346
CviAII CATG 2 cut(s) 88, 169
CviJI RGCY 3 cut(s) 46, 232, 239
CviKI_1 RGCY 3 cut(s) 46, 232, 239
DpnI GATC 3 cut(s) 18, 137, 167
DpnII GATC 3 cut(s) 16, 135, 165
Eco91I GGTNACC 1 cut(s) 302
EcoO65I GGTNACC 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 344
FaeI CATG 2 cut(s) 91, 172
FaiI YATR 6 cut(s) 89, 108, 110, 140, 170, 395
FatI CATG 2 cut(s) 87, 168
FbaI TGATCA 1 cut(s) 16
FokI GGATG 2 cut(s) 191, 376
FspBI CTAG 1 cut(s) 251
GlaI GCGC 2 cut(s) 6, 284
HgaI GACGC 1 cut(s) 346
HhaI GCGC 2 cut(s) 7, 285
Hin1II CATG 2 cut(s) 91, 172
Hin6I GCGC 2 cut(s) 5, 283
HinP1I GCGC 2 cut(s) 5, 283
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 2 cut(s) 155, 338
HphI GGTGA 2 cut(s) 314, 347
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 21, 343
Hpy188III TCNNGA 2 cut(s) 37, 361
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 4 cut(s) 34, 85, 248, 387
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 374, 386
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 2 cut(s) 91, 172
HspAI GCGC 2 cut(s) 5, 283
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 3 cut(s) 16, 135, 165
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 4 cut(s) 246, 285, 318, 320
LweI GCATC 1 cut(s) 395
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 277, 302
MalI GATC 3 cut(s) 18, 137, 167
MbiI CCGCTC 1 cut(s) 403
MboI GATC 3 cut(s) 16, 135, 165
MboII GAAGA 1 cut(s) 23
MluCI AATT 3 cut(s) 204, 344, 415
MnlI CCTC 4 cut(s) 94, 108, 229, 281
MroXI GAANNNNTTC 1 cut(s) 154
MseI TTAA 2 cut(s) 174, 418
MvnI CGCG 1 cut(s) 283
NdeII GATC 3 cut(s) 16, 135, 165
NlaIII CATG 2 cut(s) 91, 172
NmuCI GTSAC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 154
PfeI GAWTC 2 cut(s) 155, 338
PspEI GGTNACC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 174, 418
Sau3AI GATC 3 cut(s) 16, 135, 165
SetI ASST 4 cut(s) 48, 99, 372, 379
SfaNI GCATC 1 cut(s) 395
Sse9I AATT 3 cut(s) 204, 344, 415
SsiI CCGC 1 cut(s) 401
SspMI CTAG 1 cut(s) 251
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 380
TasI AATT 3 cut(s) 204, 344, 415
TfiI GAWTC 2 cut(s) 155, 338
Tru1I TTAA 2 cut(s) 174, 418
Tru9I TTAA 2 cut(s) 174, 418
TseFI GTSAC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 104, 197
XapI RAATTY 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 154
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.