Prupe.1G442800_v2.0.a1

Far upstream element-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
37563146 .. 37566923
3778 bp
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UTR
Exon/CDS
Intron
Prupe.1G442800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 213 bp
ATGCTTTTAGGGAGATCAATATATTCAATCAAAGATGCCGGTTGCCATGATTTATTTGTGTTGAAGGTGCCAATTTCGAATTGGTTGGCTTTAAAAATGCAGATTTGGCTATTGCATTTTCCATGGGGTCAGCATTGCCTATACAACCACTATTCACTCTCATCCACCGAAGAAAGGTATCTGGCATTTAATCTCGCGATTGCAGGATGTTAA

Protein Analysis

71

Amino Acids

8.1

Weight (kDa)

7.77

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028382)

Species Orthologous Gene IDs
malus_domestica MD15G1088700.v1.1
prunus_persica Prupe.1G442800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AccII CGCG 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 2 cut(s) 27, 64
AsuII TTCGAA 1 cut(s) 77
BanI GGYRCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 69
BmsI GCATC 1 cut(s) 25
Bpu14I TTCGAA 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 2 cut(s) 161, 212
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 174
Bsp119I TTCGAA 1 cut(s) 77
Bsp143I GATC 1 cut(s) 14
Bsp19I CCATGG 1 cut(s) 122
Bsp68I TCGCGA 1 cut(s) 197
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 69
BspT104I TTCGAA 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 2 cut(s) 161, 212
BstFNI CGCG 1 cut(s) 197
BstKTI GATC 1 cut(s) 17
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstUI CGCG 1 cut(s) 197
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 2 cut(s) 161, 212
BtuMI TCGCGA 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 38
CviAII CATG 2 cut(s) 47, 123
CviJI RGCY 2 cut(s) 89, 109
CviKI_1 RGCY 2 cut(s) 89, 109
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
DraI TTTAAA 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 2 cut(s) 50, 126
FaiI YATR 4 cut(s) 22, 48, 124, 142
FatI CATG 2 cut(s) 46, 122
FokI GGATG 1 cut(s) 148
HapII CCGG 1 cut(s) 39
Hin1II CATG 2 cut(s) 50, 126
HpaII CCGG 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 100, 115, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 2 cut(s) 50, 126
Kzo9I GATC 1 cut(s) 14
LpnPI CCDG 3 cut(s) 52, 167, 189
LweI GCATC 1 cut(s) 25
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 1 cut(s) 182
MluCI AATT 2 cut(s) 72, 79
MseI TTAA 3 cut(s) 92, 189, 211
MspI CCGG 1 cut(s) 39
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 122
NdeII GATC 1 cut(s) 14
NlaIII CATG 2 cut(s) 50, 126
NlaIV GGNNCC 1 cut(s) 69
NruI TCGCGA 1 cut(s) 197
NspV TTCGAA 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 69
RruI TCGCGA 1 cut(s) 197
SaqAI TTAA 3 cut(s) 92, 189, 211
Sau3AI GATC 1 cut(s) 14
SetI ASST 2 cut(s) 69, 179
SfaNI GCATC 1 cut(s) 25
SfuI TTCGAA 1 cut(s) 77
SgeI CNNG 6 cut(s) 51, 59, 135, 194, 206, 208
Sse9I AATT 2 cut(s) 72, 79
StyI CCWWGG 1 cut(s) 122
TaqI TCGA 1 cut(s) 77
TasI AATT 2 cut(s) 72, 79
Tru1I TTAA 3 cut(s) 92, 189, 211
Tru9I TTAA 3 cut(s) 92, 189, 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.