Prupe.1G459600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
38471993 .. 38472193
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G459600.1

Sequence Viewer

Length: 201 bp
ATGTGTTTCGTGTTTGTGTGTGGTGAAGATGAGACGGTGCTTTCAAGGCAACCAGCACCAGGGGCATGCCCCTACTGTGGAGGAATGGTGCAAGCCATGGATGTTGAGAGTCGGTGGACGTTCTGCTTCCTGCCTCTCTACTGGAAGACCAAGCGCAAGTTGTACTGCGCCGTGTGCACTAGGCGCTTGGTAGTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.59

Weight (kDa)

8.55

Isoelectric Point (pI)

69.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020848)

Species Orthologous Gene IDs
prunus_persica Prupe.1G459600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0305041
rosa_roxburghii Rroxscaffold_7G00163210
rosa_rugosa Rorug06G0337000
rosa_wichuraiana Rw6G039070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 164, 195
AfiI CCNNNNNNNGG 2 cut(s) 59, 77
AgsI TTSAA 1 cut(s) 45
AjnI CCWGG 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 26
Alw44I GTGCAC 1 cut(s) 175
ApaLI GTGCAC 1 cut(s) 175
AspLEI GCGC 3 cut(s) 156, 170, 186
AsuHPI GGTGA 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 59, 96
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 77
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 59, 96
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 59, 77
BseNI ACTGG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 59, 77
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 179
Bsp19I CCATGG 1 cut(s) 96
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 59, 96
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 3 cut(s) 37, 77, 198
BstC8I GCNNGC 2 cut(s) 67, 93
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 3 cut(s) 156, 170, 186
BstMAI GTCTC 1 cut(s) 26
BstMWI GCNNNNNNNGC 4 cut(s) 46, 62, 174, 183
BstNI CCWGG 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 58
BstSLI GKGCMC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 67, 93
CfoI GCGC 3 cut(s) 156, 170, 186
Csp6I GTAC 2 cut(s) 163, 194
CviAII CATG 2 cut(s) 66, 97
CviJI RGCY 1 cut(s) 95
CviKI_1 RGCY 1 cut(s) 95
CviQI GTAC 2 cut(s) 163, 194
Eco130I CCWWGG 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 2 cut(s) 69, 100
FaiI YATR 2 cut(s) 67, 98
FatI CATG 2 cut(s) 65, 96
FokI GGATG 1 cut(s) 113
FspBI CTAG 1 cut(s) 180
GlaI GCGC 3 cut(s) 155, 169, 185
HaeII RGCGCY 1 cut(s) 187
HhaI GCGC 3 cut(s) 156, 170, 186
Hin1II CATG 2 cut(s) 69, 100
Hin6I GCGC 3 cut(s) 154, 168, 184
HinP1I GCGC 3 cut(s) 154, 168, 184
HinfI GANTC 1 cut(s) 109
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 117, 177
Hpy8I GTNNAC 2 cut(s) 117, 177
HpyCH4III ACNGT 3 cut(s) 37, 77, 198
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 91, 177
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 62, 174, 183
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 2 cut(s) 69, 100
HspAI GCGC 3 cut(s) 154, 168, 184
LpnPI CCDG 5 cut(s) 45, 66, 72, 127, 143
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 119
MboII GAAGA 2 cut(s) 38, 157
MhlI GDGCHC 1 cut(s) 179
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 2 cut(s) 74, 144
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 4 cut(s) 46, 62, 174, 183
NcoI CCATGG 1 cut(s) 96
NlaIII CATG 2 cut(s) 69, 100
NspI RCATGY 1 cut(s) 69
PaeI GCATGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
RsaI GTAC 2 cut(s) 164, 195
RsaNI GTAC 2 cut(s) 163, 194
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 179
SetI ASST 1 cut(s) 122
SphI GCATGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 58
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 3 cut(s) 37, 77, 198
TaiI ACGT 1 cut(s) 122
TatI WGTACW 2 cut(s) 162, 193
VneI GTGCAC 1 cut(s) 175
XceI RCATGY 1 cut(s) 69
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.