Prupe.1G475700_v2.0.a1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0029181
Physical Location & Seq
Reverse (-)
39587352 .. 39588599
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G475700.1

Sequence Viewer

Length: 627 bp
ATGAAAAGCTCTGCACACCTCAGGCAGTCGGTCTCTATAGGTCCACTTCACCATGGAAAGGAAGGCTTGAATGTCGTATTGGAAGAGAACAAACAGAGATACCTGCAAGATTTTATAGGTCGGACCAATGTGAGTTTGGAGGATTATATTAAGAAAATAAAGGACCACGAAGCAAGATTGAGACGTTGTTATGGAGAACCCATCAAGTTTAGCAGTGATGAATTTGTAACAATCATTCTAGTGGGCGCCGCCTTCGTTATTGAGCCCTTATTGAAGGACTACTTCAAATTTTGGGACGAAAATGACCGCATATTTGACAAACCAGGTATGTTGCAAGATGCATGGACAGATACGTGGTTGCTTGAAAATCAGTTGCCATTCTTCATTCTCGAGGATCTTTTCGACCCACAGAAAATTACACTCCCTGCTAATGCTGACAATAACAGCATTACTGAGGGGCTTTCAATAATTTGTATTTCTTTCAGTTTCTTCGAACATCTATTGCCTGTTGACAAATTGGAAGACAATTTGGAGACTTTTAGATCAGTGGCACATATTATTGATCTTTTCAGGAAAATATTTAAACTCTATCAACCGTTGGAATCAAAAGCTGGAGGGGAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

209

Amino Acids

24.12

Weight (kDa)

5.18

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029181)

Species Orthologous Gene IDs
prunus_persica Prupe.1G475700_v2.0.a1 Prupe.1G476300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
AccB1I GGYRCC 1 cut(s) 245
AciI CCGC 2 cut(s) 249, 307
AclWI GGATC 1 cut(s) 402
AcsI RAATTY 2 cut(s) 221, 287
AcyI GRCGYC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 5 cut(s) 70, 274, 286, 365, 465
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 2 cut(s) 9, 611
AluI AGCT 2 cut(s) 9, 611
Alw26I GTCTC 3 cut(s) 37, 175, 527
AlwI GGATC 1 cut(s) 402
Ama87I CYCGRG 1 cut(s) 389
ApoI RAATTY 2 cut(s) 221, 287
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 3 cut(s) 41, 123, 163
AsuHPI GGTGA 1 cut(s) 41
AsuII TTCGAA 1 cut(s) 492
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 3 cut(s) 41, 123, 163
AxyI CCTNAGG 1 cut(s) 20
BanI GGYRCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 528
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 3 cut(s) 37, 175, 527
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 111
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 3 cut(s) 41, 123, 163
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 3 cut(s) 41, 123, 163
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 528
BplI GAGNNNNNCTC 1 cut(s) 606
Bpu14I TTCGAA 1 cut(s) 492
BsaAI YACGTR 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse21I CCTNAGG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 34, 444
BshNI GGYRCC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 3 cut(s) 37, 175, 527
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 389
Bsp119I TTCGAA 1 cut(s) 492
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 3 cut(s) 394, 542, 562
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 2 cut(s) 249, 307
BspCNI CTCAG 2 cut(s) 33, 445
BspLI GGNNCC 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 111
BspPI GGATC 1 cut(s) 402
BspT104I TTCGAA 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 3 cut(s) 394, 542, 562
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 597
Bst6I CTCTTC 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 246
BstBAI YACGTR 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 492
BstDEI CTNAG 2 cut(s) 20, 453
BstDSI CCRYGG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 3 cut(s) 397, 545, 565
BstMAI GTCTC 3 cut(s) 37, 175, 527
BstMBI GATC 3 cut(s) 394, 542, 562
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
Bsu36I CCTNAGG 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 2 cut(s) 220, 552
BveI ACCTGC 1 cut(s) 111
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 3 cut(s) 41, 123, 163
CsiI ACCWGGT 1 cut(s) 322
CviAII CATG 2 cut(s) 53, 342
CviJI RGCY 5 cut(s) 9, 66, 265, 460, 611
CviKI_1 RGCY 5 cut(s) 9, 66, 265, 460, 611
DdeI CTNAG 2 cut(s) 20, 453
DinI GGCGCC 1 cut(s) 247
DpnI GATC 3 cut(s) 396, 544, 564
DpnII GATC 3 cut(s) 394, 542, 562
DraI TTTAAA 1 cut(s) 583
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 3 cut(s) 41, 123, 163
Eco81I CCTNAGG 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 52
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 267
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 2 cut(s) 56, 345
FaiI YATR 9 cut(s) 38, 54, 116, 147, 192, 311, 329, 343, 555
FalI AAGNNNNNCTT 4 cut(s) 50, 82, 266, 298
FaqI GGGAC 1 cut(s) 308
FatI CATG 2 cut(s) 52, 341
Fnu4HI GCNGC 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 247
GluI GCNGC 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 249
HhaI GCGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 2 cut(s) 56, 345
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 1 cut(s) 602
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 2 cut(s) 44, 511
Hpy188I TCNGA 2 cut(s) 123, 626
Hpy188III TCNNGA 2 cut(s) 389, 571
Hpy8I GTNNAC 2 cut(s) 44, 511
HpyAV CCTTC 3 cut(s) 56, 262, 268
HpyCH4III ACNGT 1 cut(s) 597
HpyCH4IV ACGT 2 cut(s) 184, 353
HpyCH4V TGCA 4 cut(s) 14, 106, 334, 341
HpyF3I CTNAG 2 cut(s) 20, 453
HpySE526I ACGT 2 cut(s) 184, 353
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 2 cut(s) 56, 345
HspAI GCGC 1 cut(s) 246
KasI GGCGCC 1 cut(s) 245
Kzo9I GATC 3 cut(s) 394, 542, 562
LpnPI CCDG 8 cut(s) 7, 116, 309, 336, 438, 519, 556, 597
LweI GCATC 1 cut(s) 328
MabI ACCWGGT 1 cut(s) 322
MaeI CTAG 1 cut(s) 239
MaeII ACGT 2 cut(s) 184, 353
MaeIII GTNAC 1 cut(s) 226
MalI GATC 3 cut(s) 396, 544, 564
MboI GATC 3 cut(s) 394, 542, 562
MboII GAAGA 4 cut(s) 95, 373, 481, 533
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 6 cut(s) 221, 287, 414, 468, 515, 526
Mly113I GGCGCC 1 cut(s) 246
MmeI TCCRAC 2 cut(s) 101, 579
MnlI CCTC 5 cut(s) 29, 133, 385, 448, 608
Mph1103I ATGCAT 1 cut(s) 343
MseI TTAA 2 cut(s) 150, 582
MslI CAYNNNNRTG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
NarI GGCGCC 1 cut(s) 246
NcoI CCATGG 1 cut(s) 52
NdeII GATC 3 cut(s) 394, 542, 562
NlaIII CATG 2 cut(s) 56, 345
NlaIV GGNNCC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 343
NspV TTCGAA 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 389
PfeI GAWTC 1 cut(s) 602
PkrI GCNGC 1 cut(s) 250
PluTI GGCGCC 1 cut(s) 249
Ppu21I YACGTR 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 3 cut(s) 41, 123, 163
PsuI RGATCY 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 150, 582
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 3 cut(s) 394, 542, 562
Sau96I GGNCC 3 cut(s) 41, 123, 163
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 267
SetI ASST 9 cut(s) 11, 21, 43, 105, 121, 187, 328, 356, 613
SexAI ACCWGGT 1 cut(s) 322
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 36
SfoI GGCGCC 1 cut(s) 247
Sfr274I CTCGAG 1 cut(s) 389
SfuI TTCGAA 1 cut(s) 492
SinI GGWCC 3 cut(s) 41, 123, 163
SlaI CTCGAG 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 6 cut(s) 221, 287, 414, 468, 515, 526
SsiI CCGC 2 cut(s) 249, 307
SspDI GGCGCC 1 cut(s) 245
SspI AATATT 1 cut(s) 579
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 597
TaiI ACGT 2 cut(s) 187, 356
TaqI TCGA 3 cut(s) 390, 402, 492
TaqII GACCGA 1 cut(s) 19
TasI AATT 6 cut(s) 221, 287, 414, 468, 515, 526
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 2 cut(s) 150, 582
Tru9I TTAA 2 cut(s) 150, 582
TscAI CASTG 2 cut(s) 220, 552
TspDTI ATGAA 3 cut(s) 17, 234, 373
TspRI CASTG 2 cut(s) 220, 552
VpaK11BI GGWCC 3 cut(s) 41, 123, 163
XapI RAATTY 2 cut(s) 221, 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XhoI CTCGAG 1 cut(s) 389
XspI CTAG 1 cut(s) 239
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.