Prupe.1G476300_v2.0.a1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0029181
Physical Location & Seq
Reverse (-)
39753844 .. 39755036
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G476300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1080 bp
ATGAGAAAAGGGTTCAATAGCTTGTCTCCCCCATCCTCCAAGTGCTGTATCTACAGAGTTCCTCAACGACTACGAAGTGTGAATGAAAAGCTCTGCACACCTCAGGTGGAAGAGCACAAACAGAGATACCTGCAAGATTTTATAGGTCGGACCAATGTGAGTTTGGAGGATTATATTAAGAAAATAAAGGACCACGAAGCAAGATTGAGACGTTGTTATGGAGAACCCATCAAGTTTAGCAGTGATGAATTTGTAACAATCATTCTAGTGGATGCCGCCTTCGTTATTGAGCTCTTATTGAAGGACTACTTCAAATTTTGGGATGAAAATGACCGCATATTTGACAAACCAGGTATGTTGCAAGATGTATGGACAGATATGTGGTTGCTTGAAAATCAGTTGCCATTCTTCATTCTCGAGGATCTTTTCGACCCACAGAAAATTACACTCCCTGCTGATGCTGACAATAACTGCATTACTGAGGGGCTTTCAATAATTAGTCTTTCTTTCAGTTTCTTCGAACATCTATTGCCTGTTGACAAAATGGAAGACAATTTGGAGACTTTTAGATCAGTGGCACATATTGTTGATCTTTACAGGAAAATATTTAAACTCTATCAACCGTTGGAATCAAAAGCTGGAGGGGAACTCCCATCATCCATACCCAGCTTGACAGAATTACAGCACGCTGGAGTCAAGTTTGAGGCGCGACAAGGTGAAAACATATTTGACATACAATTCAGTAGCACCAATGGGGTTCTGAAGATCCCACCATTTCCATTGGGGTTCACTACAGAAATAATGAGAAATGTCCTTGCCTTTGAACAATTGCATTACCCGATGAGGGATGTGGAGTTGCTTATTGAGTATGGAATCGCATATTCTGAGAGATATCTGATACGCGGAAACATTGAGGGGTTTACTTCATTATTAGTTAACAGCCTTTTCATTGGGGTTCCTATAGATGTTGATAACTTCCACTACTACATTTTACGATTTGCGCGACGAAGCCAATTTCGTCGCGCAGAGTTAAATTTGGTCGCACAAACTCAAGCACGACAGAAAATTCGTCGCGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

360

Amino Acids

41.92

Weight (kDa)

5.9

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029181)

Species Orthologous Gene IDs
prunus_persica Prupe.1G475700_v2.0.a1 Prupe.1G476300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 138
AccII CGCG 6 cut(s) 709, 903, 1003, 1023, 1074, 1076
AciI CCGC 3 cut(s) 276, 334, 903
AclWI GGATC 2 cut(s) 429, 760
AcsI RAATTY 4 cut(s) 248, 314, 1033, 1065
AcuI CTGAAG 1 cut(s) 782
AfiI CCNNNNNNNGG 1 cut(s) 844
AgsI TTSAA 6 cut(s) 16, 301, 313, 392, 492, 824
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 5 cut(s) 21, 91, 292, 638, 669
AluI AGCT 5 cut(s) 21, 91, 292, 638, 669
Alw21I GWGCWC 2 cut(s) 117, 294
Alw26I GTCTC 3 cut(s) 30, 202, 554
AlwI GGATC 2 cut(s) 429, 760
Ama87I CYCGRG 1 cut(s) 416
ApoI RAATTY 4 cut(s) 248, 314, 1033, 1065
ArsI GACNNNNNNTTYG 3 cut(s) 323, 355, 1050
AspLEI GCGC 4 cut(s) 709, 1003, 1025, 1076
AspS9I GGNCC 2 cut(s) 150, 190
AsuHPI GGTGA 1 cut(s) 728
AsuII TTCGAA 1 cut(s) 519
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 2 cut(s) 150, 190
AxyI CCTNAGG 1 cut(s) 102
BanII GRGCYC 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 2 cut(s) 117, 294
BccI CCATC 3 cut(s) 40, 236, 661
BciT130I CCWGG 1 cut(s) 351
BcoDI GTCTC 3 cut(s) 30, 202, 554
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 3 cut(s) 52, 792, 960
BfuAI ACCTGC 1 cut(s) 138
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 2 cut(s) 150, 190
BmeT110I CYCGRG 1 cut(s) 416
BmgT120I GGNCC 2 cut(s) 150, 190
BmiI GGNNCC 1 cut(s) 957
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 2 cut(s) 262, 448
BpiI GAAGAC 1 cut(s) 555
BplI GAGNNNNNCTC 2 cut(s) 633, 665
BpmI CTGGAG 2 cut(s) 660, 711
Bpu14I TTCGAA 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 1035
Bsc4I CCNNNNNNNGG 1 cut(s) 844
Bse21I CCTNAGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 351
BseGI GGATG 5 cut(s) 32, 277, 328, 656, 853
BseLI CCNNNNNNNGG 1 cut(s) 844
BseMII CTCAG 3 cut(s) 116, 471, 876
BseYI CCCAGC 1 cut(s) 665
BsgI GTGCAG 1 cut(s) 79
Bsh1236I CGCG 6 cut(s) 709, 903, 1003, 1023, 1074, 1076
BsiHKAI GWGCWC 2 cut(s) 117, 294
BsiHKCI CYCGRG 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 844
BsmAI GTCTC 3 cut(s) 30, 202, 554
BsmBI CGTCTC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 416
Bsp119I TTCGAA 1 cut(s) 519
Bsp1286I GDGCHC 2 cut(s) 117, 294
Bsp143I GATC 4 cut(s) 421, 569, 589, 765
BspACI CCGC 3 cut(s) 276, 334, 903
BspCNI CTCAG 3 cut(s) 115, 472, 877
BspFNI CGCG 6 cut(s) 709, 903, 1003, 1023, 1074, 1076
BspLI GGNNCC 1 cut(s) 957
BspMI ACCTGC 1 cut(s) 138
BspPI GGATC 2 cut(s) 429, 760
BspQI GCTCTTC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 519
BssMI GATC 4 cut(s) 421, 569, 589, 765
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 624
Bst6I CTCTTC 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 519
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 3 cut(s) 102, 480, 885
BstF5I GGATG 5 cut(s) 32, 277, 328, 656, 853
BstFNI CGCG 6 cut(s) 709, 903, 1003, 1023, 1074, 1076
BstHHI GCGC 4 cut(s) 709, 1003, 1025, 1076
BstKTI GATC 4 cut(s) 424, 572, 592, 768
BstMAI GTCTC 3 cut(s) 30, 202, 554
BstMBI GATC 4 cut(s) 421, 569, 589, 765
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 3 cut(s) 52, 792, 960
BstUI CGCG 6 cut(s) 709, 903, 1003, 1023, 1074, 1076
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 2 cut(s) 421, 765
BstYI RGATCY 2 cut(s) 421, 765
Bsu36I CCTNAGG 1 cut(s) 102
BtsCI GGATG 5 cut(s) 32, 277, 328, 656, 853
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 247, 579
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 687
CfoI GCGC 4 cut(s) 709, 1003, 1025, 1076
Cfr13I GGNCC 2 cut(s) 150, 190
CsiI ACCWGGT 1 cut(s) 349
CviJI RGCY 8 cut(s) 21, 91, 292, 487, 638, 669, 942, 1011
CviKI_1 RGCY 8 cut(s) 21, 91, 292, 487, 638, 669, 942, 1011
DdeI CTNAG 3 cut(s) 102, 480, 885
DpnI GATC 4 cut(s) 423, 571, 591, 767
DpnII GATC 4 cut(s) 421, 569, 589, 765
DraI TTTAAA 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 294
Eco32I GATATC 1 cut(s) 893
Eco47I GGWCC 2 cut(s) 150, 190
Eco53kI GAGCTC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 782
Eco81I CCTNAGG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 349
EcoRV GATATC 1 cut(s) 893
EcoT38I GRGCYC 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 202
FalI AAGNNNNNCTT 2 cut(s) 293, 325
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 5 cut(s) 19, 284, 335, 643, 860
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 1 cut(s) 266
GlaI GCGC 4 cut(s) 708, 1002, 1024, 1075
GluI GCNGC 1 cut(s) 276
GsaI CCCAGC 1 cut(s) 669
GsuI CTGGAG 2 cut(s) 660, 711
HhaI GCGC 4 cut(s) 709, 1003, 1025, 1076
Hin6I GCGC 4 cut(s) 707, 1001, 1023, 1074
HinP1I GCGC 4 cut(s) 707, 1001, 1023, 1074
HincII GTYRAC 2 cut(s) 538, 937
HindII GTYRAC 2 cut(s) 538, 937
HinfI GANTC 3 cut(s) 629, 693, 873
HpaI GTTAAC 1 cut(s) 937
HphI GGTGA 1 cut(s) 728
Hpy166II GTNNAC 4 cut(s) 538, 789, 921, 937
Hpy188I TCNGA 4 cut(s) 150, 762, 886, 897
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 4 cut(s) 538, 789, 921, 937
Hpy99I CGWCG 3 cut(s) 1008, 1023, 1074
HpyAV CCTTC 2 cut(s) 289, 295
HpyCH4III ACNGT 1 cut(s) 624
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 5 cut(s) 96, 133, 361, 474, 832
HpyF3I CTNAG 3 cut(s) 102, 480, 885
HpySE526I ACGT 1 cut(s) 211
HspAI GCGC 4 cut(s) 707, 1001, 1023, 1074
KspAI GTTAAC 1 cut(s) 937
Kzo9I GATC 4 cut(s) 421, 569, 589, 765
LguI GCTCTTC 1 cut(s) 105
LweI GCATC 2 cut(s) 262, 448
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 253
MalI GATC 4 cut(s) 423, 571, 591, 767
MboI GATC 4 cut(s) 421, 569, 589, 765
MboII GAAGA 5 cut(s) 122, 400, 508, 560, 775
MfeI CAATTG 1 cut(s) 827
MflI RGATCY 2 cut(s) 421, 765
MhlI GDGCHC 2 cut(s) 117, 294
MlyI GAGTC 1 cut(s) 702
MmeI TCCRAC 2 cut(s) 128, 606
MseI TTAA 4 cut(s) 177, 609, 936, 1031
MslI CAYNNNNRTG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 351
MunI CAATTG 1 cut(s) 827
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 6 cut(s) 709, 903, 1003, 1023, 1074, 1076
NdeII GATC 4 cut(s) 421, 569, 589, 765
NlaIV GGNNCC 1 cut(s) 957
NspV TTCGAA 1 cut(s) 519
PaeR7I CTCGAG 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 1000
PfeI GAWTC 2 cut(s) 629, 873
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
Psp124BI GAGCTC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 665
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 957
PspPI GGNCC 2 cut(s) 150, 190
PsuI RGATCY 2 cut(s) 421, 765
RseI CAYNNNNRTG 1 cut(s) 266
SacI GAGCTC 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 4 cut(s) 177, 609, 936, 1031
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 4 cut(s) 421, 569, 589, 765
Sau96I GGNCC 2 cut(s) 150, 190
SchI GAGTC 1 cut(s) 702
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 2 cut(s) 117, 294
SexAI ACCWGGT 1 cut(s) 349
SfaNI GCATC 2 cut(s) 262, 448
SfcI CTRYAG 3 cut(s) 52, 792, 960
Sfr274I CTCGAG 1 cut(s) 416
SfuI TTCGAA 1 cut(s) 519
SinI GGWCC 2 cut(s) 150, 190
SlaI CTCGAG 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 2 cut(s) 416, 1050
SmoI CTYRAG 2 cut(s) 416, 1050
SsiI CCGC 3 cut(s) 276, 334, 903
SspI AATATT 1 cut(s) 606
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 624
TaiI ACGT 1 cut(s) 214
TaqI TCGA 3 cut(s) 417, 429, 519
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 2 cut(s) 629, 873
Tru1I TTAA 4 cut(s) 177, 609, 936, 1031
Tru9I TTAA 4 cut(s) 177, 609, 936, 1031
TscAI CASTG 2 cut(s) 247, 579
TspDTI ATGAA 6 cut(s) 99, 261, 339, 400, 915, 937
TspRI CASTG 2 cut(s) 247, 579
VpaK11BI GGWCC 2 cut(s) 150, 190
XapI RAATTY 4 cut(s) 248, 314, 1033, 1065
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 416
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.