Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0022507

Physical Location & Seq

Genomic Coordinates Forward (+)

43804042 .. 43805326

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G535900.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCTTCAAGTCCCTCTGTTCTCTTGTCCTCTCCTCCTCCCACAGCAAAGGATGGTTCCCGTTTTATTGACTCAAATTACCTGCAAAAACAATCCCATGTGCCCGCTAATTTCAAATGGCCTGAGGAGGACGCGGCTTCTGCTCAAGAAGAGCTGAATGCGCCAGTAGTGGATCTTGAGGGCTTCTTCAATGGTGATGTTGTGGCAACTGAGAATGCTGCCAAGCTCATTAGGTCTTCTTGCTTGAGGCACGGCTTTTTCCAAGTGACCAACCATAGGGTTGATGCAGATCTCATCCAACTCGCTTATGATCATGTGGATGATTTCTTCAATCTTCCCATCGAGGAGAAAATAAAGGTACAGAGGCGTCCTGGTAGCCCTTATGGCTATTCGGGTGCCCATATGGATCGATTTTCGTCCAATTTGCCATGGAAGGAAACTTTTTCTTTTGCTTTCCAAGACGGTCCAGAAAAAACTGTGGCCGATTACTTCAAATTCACCATAAGCAAAGATTTCGAACAAACAGGGTTGGTGTATCAAAAGTATAGTGAAGCAATGCACTCTCTGTCTCTTTCAATTATGGAACTCCTGGCAATCGGGTTGGGAGTGGATCGGATGCTCTATAGAGAGTTCTTTGAAGATGCTGTGTCTATCATGAGAACCAACTTATATCCAACTTGCCAAGAGCCAAATCTTTCTCTTGGAACTGGACCTCATTGTGATCCTAATGCCCTCACCATTCTTCACCAAGACTTGGTTGGAGGGCTTGATGTGTTTGTTGACAACAAATGGCACAAGGTTCGGCCTGTTCTTGGTGCCCTAGTCATCAACATTGGCGACGTCTTCGCGGCATTATCGAATGGCATATACCGGAGTTGCTTGCACAGGGCTGCTGTGAACAGCCACAAGGAGAGGAGGTCTTTGGTCTTCTTTATGTGTCCTAGAGCTGACAAGGTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080167 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

319

Amino Acids

35.77

Weight (kDa)

5.76

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022507)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G442300_v2.0.a1 Prupe.1G442300_v2.0.a1 Prupe.1G535600_v2.0.a1 Prupe.1G535900_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	843
Acc36I	ACCTGC	1 cut(s)	90
AccB1I	GGYRCC	2 cut(s)	395, 815
AccB7I	CCANNNNNTGG	1 cut(s)	754
AccII	CGCG	2 cut(s)	134, 848
AciI	CCGC	3 cut(s)	105, 134, 848
AclWI	GGATC	4 cut(s)	180, 414, 618, 716
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	494
AcyI	GRCGYC	2 cut(s)	367, 840
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	3 cut(s)	276, 754, 812
AgsI	TTSAA	7 cut(s)	9, 115, 190, 331, 493, 576, 638
AjnI	CCWGG	2 cut(s)	370, 588
AluBI	AGCT	3 cut(s)	154, 226, 947
AluI	AGCT	3 cut(s)	154, 226, 947
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	4 cut(s)	180, 414, 618, 716
AoxI	GGCC	3 cut(s)	119, 480, 803
ApeKI	GCWGC	2 cut(s)	218, 890
ApoI	RAATTY	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	464, 710
AsuHPI	GGTGA	4 cut(s)	206, 490, 727, 737
AsuII	TTCGAA	1 cut(s)	516
AvaII	GGWCC	2 cut(s)	464, 710
AxyI	CCTNAGG	1 cut(s)	123
BaeGI	GKGCMC	3 cut(s)	105, 400, 820
BanI	GGYRCC	2 cut(s)	395, 815
BbsI	GAAGAC	3 cut(s)	228, 835, 919
BbvI	GCAGC	2 cut(s)	205, 877
BccI	CCATC	2 cut(s)	47, 347
BceAI	ACGGC	1 cut(s)	268
BcgI	CGANNNNNNTGC	4 cut(s)	496, 530, 782, 816
BciT130I	CCWGG	2 cut(s)	372, 590
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	2 cut(s)	821, 942
BfmI	CTRYAG	1 cut(s)	622
BfuAI	ACCTGC	1 cut(s)	90
BglI	GCCNNNNNGGC	1 cut(s)	384
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	4 cut(s)	135, 219, 849, 891
BlsI	GCNGC	4 cut(s)	136, 220, 850, 892
Bme1390I	CCNGG	2 cut(s)	372, 590
Bme18I	GGWCC	2 cut(s)	464, 710
BmgT120I	GGNCC	2 cut(s)	464, 710
BmiI	GGNNCC	3 cut(s)	58, 397, 817
BmrFI	CCNGG	2 cut(s)	372, 590
BmsI	GCATC	3 cut(s)	274, 606, 631
BpiI	GAAGAC	3 cut(s)	228, 835, 919
Bpu14I	TTCGAA	1 cut(s)	516
BpuEI	CTTGAG	3 cut(s)	129, 197, 265
Bsa29I	ATCGAT	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	288
BsaHI	GRCGYC	2 cut(s)	367, 840
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	870
BsaXI	ACNNNNNCTCC	2 cut(s)	902, 932
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 754, 812
Bse1I	ACTGG	2 cut(s)	164, 712
Bse21I	CCTNAGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	561
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	372, 590
BseCI	ATCGAT	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	4 cut(s)	58, 294, 325, 621
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	3 cut(s)	276, 754, 812
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	114, 201
BseNI	ACTGG	2 cut(s)	164, 712
BseRI	GAGGAG	5 cut(s)	24, 27, 140, 359, 928
BseSI	GKGCMC	3 cut(s)	105, 400, 820
BseXI	GCAGC	2 cut(s)	205, 877
Bsh1236I	CGCG	2 cut(s)	134, 848
BshFI	GGCC	3 cut(s)	121, 482, 805
BshNI	GGYRCC	2 cut(s)	395, 815
BshVI	ATCGAT	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	871
BslI	CCNNNNNNNGG	3 cut(s)	276, 754, 812
BsmAI	GTCTC	1 cut(s)	573
BsmI	GAATGC	2 cut(s)	163, 220
BsnI	GGCC	3 cut(s)	121, 482, 805
Bsp119I	TTCGAA	1 cut(s)	516
Bsp1286I	GDGCHC	3 cut(s)	105, 400, 820
Bsp143I	GATC	6 cut(s)	172, 289, 310, 406, 610, 721
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	3 cut(s)	105, 134, 848
BspANI	GGCC	3 cut(s)	121, 482, 805
BspCNI	CTCAG	2 cut(s)	115, 202
BspDI	ATCGAT	1 cut(s)	409
BspFNI	CGCG	2 cut(s)	134, 848
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	3 cut(s)	58, 397, 817
BspMI	ACCTGC	1 cut(s)	90
BspPI	GGATC	4 cut(s)	180, 414, 618, 716
BspQI	GCTCTTC	1 cut(s)	144
BspT104I	TTCGAA	1 cut(s)	516
BspT107I	GGYRCC	2 cut(s)	395, 815
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	164, 712
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	6 cut(s)	172, 289, 310, 406, 610, 721
BssNI	GRCGYC	2 cut(s)	367, 840
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	372, 590
Bst4CI	ACNGT	2 cut(s)	464, 478
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	2 cut(s)	367, 840
BstBI	TTCGAA	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	105, 881
BstDEI	CTNAG	2 cut(s)	123, 210
BstDSI	CCRYGG	1 cut(s)	428
BstF5I	GGATG	4 cut(s)	58, 294, 325, 621
BstFNI	CGCG	2 cut(s)	134, 848
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	6 cut(s)	175, 292, 313, 409, 613, 724
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	6 cut(s)	172, 289, 310, 406, 610, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 160, 384
BstNI	CCWGG	2 cut(s)	372, 590
BstSCI	CCNGG	2 cut(s)	370, 588
BstSFI	CTRYAG	1 cut(s)	622
BstSLI	GKGCMC	3 cut(s)	105, 400, 820
BstUI	CGCG	2 cut(s)	134, 848
BstV1I	GCAGC	2 cut(s)	205, 877
BstV2I	GAAGAC	3 cut(s)	228, 835, 919
BstX2I	RGATCY	2 cut(s)	172, 289
BstYI	RGATCY	2 cut(s)	172, 289
Bsu15I	ATCGAT	1 cut(s)	409
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	121, 482, 805
BsuTUI	ATCGAT	1 cut(s)	409
BtgI	CCRYGG	1 cut(s)	428
BtsCI	GGATG	4 cut(s)	58, 294, 325, 621
BveI	ACCTGC	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	105, 881
CciI	TCATGA	1 cut(s)	654
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	464, 710
ClaI	ATCGAT	1 cut(s)	409
CseI	GACGC	2 cut(s)	140, 356
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	4 cut(s)	98, 314, 429, 655
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	2 cut(s)	123, 210
DpnI	GATC	6 cut(s)	174, 291, 312, 408, 612, 723
DpnII	GATC	6 cut(s)	172, 289, 310, 406, 610, 721
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	428
Eco47I	GGWCC	2 cut(s)	464, 710
Eco81I	CCTNAGG	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	370, 588
EcoT14I	CCWWGG	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	4 cut(s)	101, 317, 432, 658
FatI	CATG	4 cut(s)	97, 313, 428, 654
FauI	CCCGC	1 cut(s)	112
FauNDI	CATATG	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	4 cut(s)	135, 219, 849, 891
FokI	GGATG	4 cut(s)	65, 281, 332, 628
Fsp4HI	GCNGC	4 cut(s)	135, 219, 849, 891
FspBI	CTAG	2 cut(s)	821, 942
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	4 cut(s)	135, 219, 849, 891
HaeIII	GGCC	3 cut(s)	121, 482, 805
HapII	CCGG	1 cut(s)	871
HgaI	GACGC	2 cut(s)	140, 356
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	2 cut(s)	367, 840
Hin1II	CATG	4 cut(s)	101, 317, 432, 658
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	1 cut(s)	871
HphI	GGTGA	4 cut(s)	206, 490, 727, 737
Hpy166II	GTNNAC	2 cut(s)	781, 898
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	4 cut(s)	146, 176, 467, 655
Hpy8I	GTNNAC	2 cut(s)	781, 898
Hpy99I	CGWCG	1 cut(s)	842
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	2 cut(s)	464, 478
HpyCH4IV	ACGT	1 cut(s)	840
HpyCH4V	TGCA	4 cut(s)	85, 287, 559, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 160, 384
HpyF3I	CTNAG	2 cut(s)	123, 210
HpySE526I	ACGT	1 cut(s)	840
Hsp92I	GRCGYC	2 cut(s)	367, 840
Hsp92II	CATG	4 cut(s)	101, 317, 432, 658
HspAI	GCGC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	6 cut(s)	172, 289, 310, 406, 610, 721
LguI	GCTCTTC	1 cut(s)	144
Lsp1109I	GCAGC	2 cut(s)	205, 877
LweI	GCATC	3 cut(s)	274, 606, 631
MaeI	CTAG	2 cut(s)	821, 942
MaeII	ACGT	1 cut(s)	840
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	6 cut(s)	174, 291, 312, 408, 612, 723
MboI	GATC	6 cut(s)	172, 289, 310, 406, 610, 721
MboII	GAAGA	9 cut(s)	161, 178, 228, 319, 326, 650, 734, 835, 919
MflI	RGATCY	2 cut(s)	172, 289
MhlI	GDGCHC	3 cut(s)	105, 400, 820
MluCI	AATT	5 cut(s)	76, 109, 421, 494, 576
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	3 cut(s)	322, 698, 739
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	1 cut(s)	871
MspR9I	CCNGG	2 cut(s)	372, 590
Mva1269I	GAATGC	2 cut(s)	163, 220
MvaI	CCWGG	2 cut(s)	372, 590
MvnI	CGCG	2 cut(s)	134, 848
MwoI	GCNNNNNNNGC	3 cut(s)	140, 160, 384
NcoI	CCATGG	1 cut(s)	428
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	6 cut(s)	172, 289, 310, 406, 610, 721
NlaIII	CATG	4 cut(s)	101, 317, 432, 658
NlaIV	GGNNCC	3 cut(s)	58, 397, 817
NmuCI	GTSAC	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	516
PagI	TCATGA	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	144
PctI	GAATGC	2 cut(s)	163, 220
PflMI	CCANNNNNTGG	1 cut(s)	754
PkrI	GCNGC	4 cut(s)	136, 220, 850, 892
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	370, 588
PspGI	CCWGG	2 cut(s)	370, 588
PspN4I	GGNNCC	3 cut(s)	58, 397, 817
PspPI	GGNCC	2 cut(s)	464, 710
PsuI	RGATCY	2 cut(s)	172, 289
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	144
SatI	GCNGC	4 cut(s)	135, 219, 849, 891
Sau3AI	GATC	6 cut(s)	172, 289, 310, 406, 610, 721
Sau96I	GGNCC	2 cut(s)	464, 710
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	372, 590
SduI	GDGCHC	3 cut(s)	105, 400, 820
SfaNI	GCATC	3 cut(s)	274, 606, 631
SfcI	CTRYAG	1 cut(s)	622
SfuI	TTCGAA	1 cut(s)	516
SinI	GGWCC	2 cut(s)	464, 710
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	3 cut(s)	144, 176, 244
SmoI	CTYRAG	3 cut(s)	144, 176, 244
Sse9I	AATT	5 cut(s)	76, 109, 421, 494, 576
SsiI	CCGC	3 cut(s)	105, 134, 848
SspMI	CTAG	2 cut(s)	821, 942
StyD4I	CCNGG	2 cut(s)	370, 588
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	2 cut(s)	464, 478
TaiI	ACGT	1 cut(s)	843
TaqI	TCGA	4 cut(s)	342, 409, 516, 857
TasI	AATT	5 cut(s)	76, 109, 421, 494, 576
TauI	GCSGC	2 cut(s)	137, 851
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	218, 890
Tsp45I	GTSAC	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	754
VpaK11BI	GGWCC	2 cut(s)	464, 710
XapI	RAATTY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	755
XspI	CTAG	2 cut(s)	821, 942
ZraI	GACGTC	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.