Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0029138

Physical Location & Seq

Genomic Coordinates Forward (+)

44560478 .. 44563209

Gene Structure 2732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G545500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGATGGTTGGACATGTTGATCAGCTCTCGCTTTCTGGGGTCTCTATTGCCACCTCTTTCACCAGTGTTACTGGCTTCAGTCTTCTTTCTGGTCTGGTTGGTGCATTGGAGACTCTATGTGGACAAGCATATGGCGCAGAGCAATATCAAAAGCTTGGAATTTACACTTACACATCCATCCTTTGTCTCTGTTTGGTCTGTGTCCCAATATCTCTACTATGGATATTCACAGATAAAATCCTACAATTGATAGGCCAAGACCCTTTGATCTCAAATGTAGCCCACAAATACTCACTCTGTCTCATCCCTAATCTCTTCTCCTACGCCGTACTTCAATCGCTTGTTCGATATTTCCAGACACAGAGTTTGATTCTTCCAATGCTGTATAGCTCTTGTGCAGCTCTGTGTTTGCATGTACCTCTTTGTTGGGGTCTCACCTTTAAACTCAAACTAGGAAGTATTGGAGCAGCATTAGCTATAAGCTTCTCTTGTTGGTTTAATGTGCTTTTACTTGGGTTTTACATGAAGTATTCTGTAGCATGTGAAAAGACTCGTGCACATGTGCTTTCAATTGAGGTCTTTCTAAACATTAAGGAGTTCTTCCGCTTTGCTGTTCCTTCAGCTTTAATGGTTTGCCTTGAATGGTGGTCCTATGAGGTACTTATATTGCTTTCTGGGATTTTATCAAATCCAAAATTGGAGACTTCAGTGCTTTCTATATGCTTTACAATTACATACTTGCACTACTTCATACCATATGCGTTGGGAGCCACAGCAAGCACTCGGGTTTCAAATGAGTTAGGAGCTGGGAATCCTCAGGCTGCTAAAGTCACAGTTTGTGCTGTCATGGTTCTTGCAATGGTGGAAATGATCGTTGTAAGCATAGCTCTTTTCTCTTACCGCCATATTCTAGGATATGCATTCAGCAGCGACAAGGAAATTGTGGAGCGTATTGCAGATATGGCTCCTCTTATTAGTCTCTCAATTGTTACGGATGGGTTACAAGCAGTCCTTTCAGGGGTTGCTAGAGGAACTGGATGGCAGCACATAGGTGCATATGTAAATCTTGGTGCATATTACCTCGTTGGCACTCCGGTGGGTGTGGTGCTGGCTTTTCTAGCACACTTAAGAGCAGAAGGGCTTTGGATCGGATTACTGACAGGCTTATACGGAAATATGCAGGCATCAATCGCAAGAGAGAGGATGACAAACGAGGTCTTAGCTAGAGTGGAACCAGTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

415

Amino Acids

45.1

Weight (kDa)

7.04

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029138)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G545500_v2.0.a1
pyrus_communis	pycom08g18320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	604, 901
AclWI	GGATC	1 cut(s)	1154
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	3 cut(s)	61, 603, 690
AfaI	GTAC	3 cut(s)	330, 417, 660
AfiI	CCNNNNNNNGG	1 cut(s)	1018
AflII	CTTAAG	1 cut(s)	1126
AflIII	ACRYGT	2 cut(s)	13, 559
AgsI	TTSAA	4 cut(s)	335, 570, 641, 792
AleI	CACNNNNGTG	2 cut(s)	1050, 1094
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	7 cut(s)	46, 104, 191, 305, 437, 695, 983
Alw44I	GTGCAC	1 cut(s)	555
AlwI	GGATC	1 cut(s)	1154
Ama87I	CYCGRG	1 cut(s)	783
AoxI	GGCC	1 cut(s)	253
ApaLI	GTGCAC	1 cut(s)	555
ApeKI	GCWGC	5 cut(s)	398, 467, 821, 927, 1042
ApoI	RAATTY	1 cut(s)	159
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	648
AsuHPI	GGTGA	2 cut(s)	52, 427
AvaI	CYCGRG	1 cut(s)	783
AvaII	GGWCC	1 cut(s)	648
AxyI	CCTNAGG	1 cut(s)	816
BaeGI	GKGCMC	1 cut(s)	559
BauI	CACGAG	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	5 cut(s)	410, 479, 808, 939, 1054
BccI	CCATC	3 cut(s)	185, 989, 1032
BceAI	ACGGC	1 cut(s)	311
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	7 cut(s)	46, 104, 191, 305, 437, 695, 983
BfaI	CTAG	5 cut(s)	452, 911, 1026, 1118, 1224
BfmI	CTRYAG	1 cut(s)	534
BfrI	CTTAAG	1 cut(s)	1126
BisI	GCNGC	5 cut(s)	399, 468, 822, 928, 1043
BlsI	GCNGC	5 cut(s)	400, 469, 823, 929, 1044
Bme18I	GGWCC	1 cut(s)	648
BmeT110I	CYCGRG	1 cut(s)	783
BmgT120I	GGNCC	1 cut(s)	648
BmiI	GGNNCC	3 cut(s)	769, 966, 1233
BmsI	GCATC	1 cut(s)	1193
BpiI	GAAGAC	1 cut(s)	74
BsaI	GGTCTC	2 cut(s)	46, 437
BsaWI	WCCGGW	1 cut(s)	1093
Bsc4I	CCNNNNNNNGG	1 cut(s)	1018
Bse1I	ACTGG	4 cut(s)	63, 76, 1039, 1235
Bse21I	CCTNAGG	1 cut(s)	816
Bse3DI	GCAATG	1 cut(s)	864
BseGI	GGATG	6 cut(s)	173, 177, 303, 1000, 1043, 1209
BseLI	CCNNNNNNNGG	1 cut(s)	1018
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	1 cut(s)	830
BseNI	ACTGG	4 cut(s)	63, 76, 1039, 1235
BseRI	GAGGAG	1 cut(s)	957
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	5 cut(s)	410, 479, 808, 939, 1054
BseYI	CCCAGC	1 cut(s)	806
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	783
BsiSI	CCGG	1 cut(s)	1094
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	1018
BsmAI	GTCTC	7 cut(s)	46, 104, 191, 305, 437, 695, 983
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	920
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	2 cut(s)	46, 437
BsoBI	CYCGRG	1 cut(s)	783
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	4 cut(s)	19, 267, 870, 1146
BspACI	CCGC	2 cut(s)	604, 901
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	829
BspLI	GGNNCC	3 cut(s)	769, 966, 1233
BspPI	GGATC	1 cut(s)	1154
BspTI	CTTAAG	1 cut(s)	1126
BspTNI	GGTCTC	2 cut(s)	46, 437
BsrDI	GCAATG	1 cut(s)	864
BsrI	ACTGG	4 cut(s)	63, 76, 1039, 1235
BssMI	GATC	4 cut(s)	19, 267, 870, 1146
BssSI	CACGAG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	835
Bst6I	CTCTTC	1 cut(s)	320
BstAFI	CTTAAG	1 cut(s)	1126
BstC8I	GCNNGC	3 cut(s)	778, 1110, 1182
BstDEI	CTNAG	2 cut(s)	816, 1219
BstF5I	GGATG	6 cut(s)	173, 177, 303, 1000, 1043, 1209
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	4 cut(s)	22, 270, 873, 1149
BstMAI	GTCTC	7 cut(s)	46, 104, 191, 305, 437, 695, 983
BstMBI	GATC	4 cut(s)	19, 267, 870, 1146
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 473, 767, 962, 1118, 1190
BstNSI	RCATGY	4 cut(s)	17, 416, 543, 563
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	5 cut(s)	410, 479, 808, 939, 1054
BstV2I	GAAGAC	1 cut(s)	74
Bsu36I	CCTNAGG	1 cut(s)	816
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	6 cut(s)	173, 177, 303, 1000, 1043, 1209
BtsIMutI	CAGTG	2 cut(s)	70, 714
Cac8I	GCNNGC	3 cut(s)	778, 1110, 1182
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	648
Csp6I	GTAC	3 cut(s)	329, 416, 659
CviAII	CATG	6 cut(s)	14, 413, 523, 540, 560, 847
CviQI	GTAC	3 cut(s)	329, 416, 659
DdeI	CTNAG	2 cut(s)	816, 1219
DpnI	GATC	4 cut(s)	21, 269, 872, 1148
DpnII	GATC	4 cut(s)	19, 267, 870, 1146
DraI	TTTAAA	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco31I	GGTCTC	2 cut(s)	46, 437
Eco47I	GGWCC	1 cut(s)	648
Eco57I	CTGAAG	3 cut(s)	61, 603, 690
Eco81I	CCTNAGG	1 cut(s)	816
Eco88I	CYCGRG	1 cut(s)	783
EcoT22I	ATGCAT	1 cut(s)	922
FaeI	CATG	6 cut(s)	17, 416, 526, 543, 563, 850
FalI	AAGNNNNNCTT	6 cut(s)	472, 504, 584, 616, 996, 1028
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	6 cut(s)	13, 412, 522, 539, 559, 846
FauNDI	CATATG	3 cut(s)	130, 757, 1057
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	5 cut(s)	399, 468, 822, 928, 1043
FokI	GGATG	6 cut(s)	160, 164, 290, 1007, 1050, 1216
Fsp4HI	GCNGC	5 cut(s)	399, 468, 822, 928, 1043
FspBI	CTAG	5 cut(s)	452, 911, 1026, 1118, 1224
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	5 cut(s)	399, 468, 822, 928, 1043
GsaI	CCCAGC	1 cut(s)	810
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	1094
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	6 cut(s)	17, 416, 526, 543, 563, 850
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HindIII	AAGCTT	2 cut(s)	152, 481
HinfI	GANTC	4 cut(s)	112, 370, 550, 811
HpaII	CCGG	1 cut(s)	1094
HphI	GGTGA	2 cut(s)	52, 427
Hpy166II	GTNNAC	2 cut(s)	122, 557
Hpy188I	TCNGA	1 cut(s)	1151
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	2 cut(s)	122, 557
HpyAV	CCTTC	2 cut(s)	627, 1130
HpyCH4III	ACNGT	1 cut(s)	835
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 473, 767, 962, 1118, 1190
HpyF3I	CTNAG	2 cut(s)	816, 1219
Hsp92II	CATG	6 cut(s)	17, 416, 526, 543, 563, 850
HspAI	GCGC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	19, 267, 870, 1146
LmnI	GCTCC	5 cut(s)	464, 767, 803, 946, 970
Lsp1109I	GCAGC	5 cut(s)	410, 479, 808, 939, 1054
LweI	GCATC	1 cut(s)	1193
MaeI	CTAG	5 cut(s)	452, 911, 1026, 1118, 1224
MaeIII	GTNAC	4 cut(s)	67, 829, 988, 999
MalI	GATC	4 cut(s)	21, 269, 872, 1148
MboI	GATC	4 cut(s)	19, 267, 870, 1146
MboII	GAAGA	4 cut(s)	74, 307, 365, 592
MfeI	CAATTG	3 cut(s)	245, 570, 984
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	7 cut(s)	159, 245, 570, 695, 729, 939, 984
MlyI	GAGTC	2 cut(s)	106, 544
MmeI	TCCRAC	1 cut(s)	1219
Mph1103I	ATGCAT	1 cut(s)	922
MseI	TTAA	5 cut(s)	441, 498, 591, 626, 1127
MslI	CAYNNNNRTG	2 cut(s)	1050, 1094
MspCI	CTTAAG	1 cut(s)	1126
MspI	CCGG	1 cut(s)	1094
MunI	CAATTG	3 cut(s)	245, 570, 984
Mva1269I	GAATGC	1 cut(s)	920
MwoI	GCNNNNNNNGC	6 cut(s)	134, 473, 767, 962, 1118, 1190
NdeI	CATATG	3 cut(s)	130, 757, 1057
NdeII	GATC	4 cut(s)	19, 267, 870, 1146
NlaIII	CATG	6 cut(s)	17, 416, 526, 543, 563, 850
NlaIV	GGNNCC	3 cut(s)	769, 966, 1233
NmuCI	GTSAC	1 cut(s)	829
NsiI	ATGCAT	1 cut(s)	922
NspI	RCATGY	4 cut(s)	17, 416, 543, 563
OliI	CACNNNNGTG	2 cut(s)	1050, 1094
PciI	ACATGT	2 cut(s)	13, 559
PctI	GAATGC	1 cut(s)	920
PfeI	GAWTC	2 cut(s)	370, 811
PkrI	GCNGC	5 cut(s)	400, 469, 823, 929, 1044
PleI	GAGTC	2 cut(s)	106, 544
PpsI	GAGTC	2 cut(s)	106, 544
PscI	ACATGT	2 cut(s)	13, 559
PspFI	CCCAGC	1 cut(s)	806
PspN4I	GGNNCC	3 cut(s)	769, 966, 1233
PspPI	GGNCC	1 cut(s)	648
RsaI	GTAC	3 cut(s)	330, 417, 660
RsaNI	GTAC	3 cut(s)	329, 416, 659
RseI	CAYNNNNRTG	2 cut(s)	1050, 1094
SaqAI	TTAA	5 cut(s)	441, 498, 591, 626, 1127
SatI	GCNGC	5 cut(s)	399, 468, 822, 928, 1043
Sau3AI	GATC	4 cut(s)	19, 267, 870, 1146
Sau96I	GGNCC	1 cut(s)	648
SchI	GAGTC	2 cut(s)	106, 544
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	1 cut(s)	1193
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	2 cut(s)	1050, 1094
SmlI	CTYRAG	1 cut(s)	1126
SmoI	CTYRAG	1 cut(s)	1126
Sse9I	AATT	7 cut(s)	159, 245, 570, 695, 729, 939, 984
SsiI	CCGC	2 cut(s)	604, 901
SspMI	CTAG	5 cut(s)	452, 911, 1026, 1118, 1224
TaaI	ACNGT	1 cut(s)	835
TaqI	TCGA	1 cut(s)	346
TasI	AATT	7 cut(s)	159, 245, 570, 695, 729, 939, 984
TfiI	GAWTC	2 cut(s)	370, 811
Tru1I	TTAA	5 cut(s)	441, 498, 591, 626, 1127
Tru9I	TTAA	5 cut(s)	441, 498, 591, 626, 1127
TscAI	CASTG	2 cut(s)	70, 714
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	5 cut(s)	398, 467, 821, 927, 1042
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	2 cut(s)	539, 739
TspGWI	ACGGA	2 cut(s)	1007, 1185
TspRI	CASTG	2 cut(s)	70, 714
Vha464I	CTTAAG	1 cut(s)	1126
VneI	GTGCAC	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	648
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	4 cut(s)	17, 416, 543, 563
XspI	CTAG	5 cut(s)	452, 911, 1026, 1118, 1224
Zsp2I	ATGCAT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.