Prupe.1G546700_v2.0.a1

Topless-related protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
44689967 .. 44692408
2442 bp
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UTR
Exon/CDS
Intron
Prupe.1G546700.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 507 bp
ATGAACAATGACCTTCCCAGCACCAACCCTGAAGACTCGATGTCCTGCTTTGATTTGTCCAAGAATGATTCATATCTCATGTCAGCAACAGGAGGGATGATCTCCATTTTTGACACGACAACATTCAAGACGATGAAGAAAGTCATGCCACCGCCACCTGCGGCAACATGTCTTACTTTTCACCCTCGAGATGACAATATAGTTGCTATTGGCATGGACAATTCCACCATTGTAATATACAATCTCCACTCAGACGAGGTTACAAGGAAGCTTGAGGGTCACGCCAAAAGAGTGCCTTGCCTTCTCGAACACTCTGAATATTTTTGTGTGGGGTGCTGCTGGGTGGGAAAAACAGAGAAGCAAATTGTTGCAGACTCCAGATGGGAAGGAGTTGAGATCATATTGTCAGATACTTACATCCAAATTCACCAGAATGAGCTGCACCTCCTTGCCATAAACAAGACTCACCTTGCAGTGTATGAAGTGAAAGAACTAGCATGTGTTTAG

Protein Analysis

169

Amino Acids

18.85

Weight (kDa)

5.26

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029056)

Species Orthologous Gene IDs
prunus_persica Prupe.1G546700_v2.0.a1 Prupe.4G061200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
Acc36I ACCTGC 1 cut(s) 166
AciI CCGC 2 cut(s) 152, 161
AcsI RAATTY 1 cut(s) 423
AcuI CTGAAG 1 cut(s) 51
AflIII ACRYGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 127
AhdI GACNNNNNGTC 1 cut(s) 40
AluBI AGCT 2 cut(s) 271, 439
AluI AGCT 2 cut(s) 271, 439
Ama87I CYCGRG 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 336, 439
ApoI RAATTY 1 cut(s) 423
AsuHPI GGTGA 3 cut(s) 173, 419, 458
AvaI CYCGRG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 323, 426
BccI CCATC 1 cut(s) 375
BfaI CTAG 1 cut(s) 494
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 3 cut(s) 162, 337, 440
BlsI GCNGC 3 cut(s) 163, 338, 441
BmeRI GACNNNNNGTC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 293
BsaBI GATNNNNATC 1 cut(s) 72
Bse8I GATNNNNATC 1 cut(s) 72
BseGI GGATG 2 cut(s) 102, 417
BseJI GATNNNNATC 1 cut(s) 72
BseMII CTCAG 1 cut(s) 264
BseXI GCAGC 2 cut(s) 323, 426
BseYI CCCAGC 2 cut(s) 17, 339
BsgI GTGCAG 1 cut(s) 425
BsiHKCI CYCGRG 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 2 cut(s) 99, 396
BspACI CCGC 2 cut(s) 152, 161
BspCNI CTCAG 1 cut(s) 263
BspMI ACCTGC 1 cut(s) 166
BssMI GATC 2 cut(s) 99, 396
BstDEI CTNAG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 102, 417
BstKTI GATC 2 cut(s) 102, 399
BstMBI GATC 2 cut(s) 99, 396
BstNSI RCATGY 2 cut(s) 171, 501
BstV1I GCAGC 2 cut(s) 323, 426
BstV2I GAAGAC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 102, 417
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 480
BveI ACCTGC 1 cut(s) 166
CviAII CATG 5 cut(s) 79, 145, 168, 214, 498
CviJI RGCY 2 cut(s) 271, 439
CviKI_1 RGCY 2 cut(s) 271, 439
DdeI CTNAG 1 cut(s) 250
DpnI GATC 2 cut(s) 101, 398
DpnII GATC 2 cut(s) 99, 396
DriI GACNNNNNGTC 1 cut(s) 40
Eam1105I GACNNNNNGTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 186
FaeI CATG 5 cut(s) 82, 148, 171, 217, 501
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FatI CATG 5 cut(s) 78, 144, 167, 213, 497
Fnu4HI GCNGC 3 cut(s) 162, 337, 440
FokI GGATG 2 cut(s) 109, 404
Fsp4HI GCNGC 3 cut(s) 162, 337, 440
FspBI CTAG 1 cut(s) 494
GluI GCNGC 3 cut(s) 162, 337, 440
GsaI CCCAGC 2 cut(s) 21, 343
GsuI CTGGAG 1 cut(s) 361
Hin1II CATG 5 cut(s) 82, 148, 171, 217, 501
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 4 cut(s) 35, 68, 374, 463
HphI GGTGA 3 cut(s) 173, 419, 458
Hpy188I TCNGA 3 cut(s) 253, 316, 409
Hpy188III TCNNGA 4 cut(s) 127, 188, 305, 378
HpyAV CCTTC 3 cut(s) 23, 311, 380
HpyCH4V TGCA 3 cut(s) 371, 442, 473
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 5 cut(s) 82, 148, 171, 217, 501
Kzo9I GATC 2 cut(s) 99, 396
LpnPI CCDG 8 cut(s) 31, 42, 58, 75, 171, 325, 391, 443
Lsp1109I GCAGC 2 cut(s) 323, 426
MaeI CTAG 1 cut(s) 494
MaeIII GTNAC 2 cut(s) 259, 278
MalI GATC 2 cut(s) 101, 398
MboI GATC 2 cut(s) 99, 396
MboII GAAGA 2 cut(s) 44, 148
MluCI AATT 3 cut(s) 220, 363, 423
MlyI GAGTC 3 cut(s) 29, 368, 457
MnlI CCTC 5 cut(s) 86, 195, 250, 268, 455
MslI CAYNNNNRTG 1 cut(s) 432
NdeII GATC 2 cut(s) 99, 396
NlaIII CATG 5 cut(s) 82, 148, 171, 217, 501
NmuCI GTSAC 1 cut(s) 278
NspI RCATGY 2 cut(s) 171, 501
PaeR7I CTCGAG 1 cut(s) 186
PaqCI CACCTGC 1 cut(s) 166
PciI ACATGT 1 cut(s) 167
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 3 cut(s) 163, 338, 441
PleI GAGTC 3 cut(s) 29, 368, 457
PpsI GAGTC 3 cut(s) 29, 368, 457
PscI ACATGT 1 cut(s) 167
PspFI CCCAGC 2 cut(s) 17, 339
RseI CAYNNNNRTG 1 cut(s) 432
SatI GCNGC 3 cut(s) 162, 337, 440
Sau3AI GATC 2 cut(s) 99, 396
SchI GAGTC 3 cut(s) 29, 368, 457
SetI ASST 7 cut(s) 15, 160, 261, 273, 441, 447, 471
Sfr274I CTCGAG 1 cut(s) 186
SlaI CTCGAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 2 cut(s) 186, 272
SmoI CTYRAG 2 cut(s) 186, 272
Sse9I AATT 3 cut(s) 220, 363, 423
SsiI CCGC 2 cut(s) 152, 161
SspI AATATT 1 cut(s) 320
SspMI CTAG 1 cut(s) 494
TaqI TCGA 3 cut(s) 38, 187, 306
TasI AATT 3 cut(s) 220, 363, 423
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 68
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 2 cut(s) 336, 439
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 4 cut(s) 17, 60, 149, 495
TspRI CASTG 1 cut(s) 480
XapI RAATTY 1 cut(s) 423
XceI RCATGY 2 cut(s) 171, 501
XhoI CTCGAG 1 cut(s) 186
XspI CTAG 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.