Prupe.4G061200_v2.0.a1

Topless-related protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
2923603 .. 2924482
880 bp
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UTR
Exon/CDS
Intron
Prupe.4G061200.1

Sequence Viewer

Length: 510 bp
ATGAACAATGACCTTCCCAGCACCAACCTTGAAGACTCTATGTCCTGCTTTGATTTTTCCAAGAATGATTCATGTCTCATATCAGCAACGGGAGGGATGATCTCCATTTTTGACATGAAAACATTTAAGACGATGAAGAAAGTCATGCCACCGCCACCTGCGGCAACATGTCTTGGTTTTCACCCCCGAGATGACAGTATAGTTGCTATTGGCATGGACAATTCCACCATTGTAATATACAATCTCCACTCAGACGAGGTTACAAGGAAGCTTGAGGGTCACGCCAAAAGAGTCACTAGCCTTGCCTTCTCGAACACACTGAATATTTATGTGTGGGGTGCTACTGGGTGGGAAAAACACAGAAGCAAATTGTTGCAGATTCCAGATGGGAAGGAGTTGAAATCATTGTCATATACTTACATCCAAATTCACCAGAATGAGCTGCACCTCATTGCCATAAACAAGACTCACCTTGCAGTGTATGAAGTGAAAGAACTAGCATCTGTTTAG

Protein Analysis

170

Amino Acids

18.9

Weight (kDa)

6.64

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029056)

Species Orthologous Gene IDs
prunus_persica Prupe.1G546700_v2.0.a1 Prupe.4G061200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
Acc36I ACCTGC 1 cut(s) 166
AciI CCGC 2 cut(s) 152, 161
AcsI RAATTY 1 cut(s) 426
AflIII ACRYGT 1 cut(s) 167
AgsI TTSAA 2 cut(s) 32, 400
AhdI GACNNNNNGTC 1 cut(s) 40
AluBI AGCT 2 cut(s) 271, 442
AluI AGCT 2 cut(s) 271, 442
Alw26I GTCTC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 442
ApoI RAATTY 1 cut(s) 426
AsuHPI GGTGA 3 cut(s) 173, 422, 461
AvaI CYCGRG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 429
BccI CCATC 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 2 cut(s) 297, 497
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 2 cut(s) 162, 443
BlsI GCNGC 2 cut(s) 163, 444
BmeRI GACNNNNNGTC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 450
BseGI GGATG 2 cut(s) 102, 420
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 349
BseXI GCAGC 1 cut(s) 429
BseYI CCCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 428
BsiHKCI CYCGRG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 2 cut(s) 152, 161
BspCNI CTCAG 1 cut(s) 263
BspMI ACCTGC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 1 cut(s) 349
BssMI GATC 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 197
BstDEI CTNAG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 102, 420
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 429
BstV2I GAAGAC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 102, 420
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 2 cut(s) 317, 483
BveI ACCTGC 1 cut(s) 166
CviAII CATG 5 cut(s) 72, 115, 145, 168, 214
CviJI RGCY 3 cut(s) 271, 300, 442
CviKI_1 RGCY 3 cut(s) 271, 300, 442
DdeI CTNAG 1 cut(s) 250
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
DriI GACNNNNNGTC 1 cut(s) 40
Eam1105I GACNNNNNGTC 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 186
FaeI CATG 5 cut(s) 75, 118, 148, 171, 217
FatI CATG 5 cut(s) 71, 114, 144, 167, 213
Fnu4HI GCNGC 2 cut(s) 162, 443
FokI GGATG 2 cut(s) 109, 407
Fsp4HI GCNGC 2 cut(s) 162, 443
FspBI CTAG 2 cut(s) 297, 497
GluI GCNGC 2 cut(s) 162, 443
GsaI CCCAGC 1 cut(s) 21
Hin1II CATG 5 cut(s) 75, 118, 148, 171, 217
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 5 cut(s) 35, 68, 291, 379, 466
HphI GGTGA 3 cut(s) 173, 422, 461
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 2 cut(s) 310, 383
HpyAV CCTTC 3 cut(s) 23, 316, 385
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 3 cut(s) 376, 445, 476
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 5 cut(s) 75, 118, 148, 171, 217
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 6 cut(s) 31, 58, 171, 330, 396, 446
Lsp1109I GCAGC 1 cut(s) 429
MaeI CTAG 2 cut(s) 297, 497
MaeIII GTNAC 3 cut(s) 259, 278, 292
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 44, 148
MluCI AATT 3 cut(s) 220, 368, 426
MlyI GAGTC 3 cut(s) 29, 300, 460
MnlI CCTC 4 cut(s) 86, 250, 268, 458
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 435
NdeII GATC 1 cut(s) 99
NlaIII CATG 5 cut(s) 75, 118, 148, 171, 217
NmuCI GTSAC 2 cut(s) 278, 292
NspI RCATGY 1 cut(s) 171
PaqCI CACCTGC 1 cut(s) 166
PciI ACATGT 1 cut(s) 167
PfeI GAWTC 2 cut(s) 68, 379
PkrI GCNGC 2 cut(s) 163, 444
PleI GAGTC 3 cut(s) 29, 299, 460
PpsI GAGTC 3 cut(s) 29, 299, 460
PscI ACATGT 1 cut(s) 167
PspFI CCCAGC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 162, 443
Sau3AI GATC 1 cut(s) 99
SchI GAGTC 3 cut(s) 29, 300, 460
SetI ASST 8 cut(s) 15, 30, 160, 261, 273, 444, 450, 474
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 3 cut(s) 220, 368, 426
SsiI CCGC 2 cut(s) 152, 161
SspI AATATT 1 cut(s) 325
SspMI CTAG 2 cut(s) 297, 497
TaaI ACNGT 1 cut(s) 197
TaqI TCGA 1 cut(s) 311
TasI AATT 3 cut(s) 220, 368, 426
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 68, 379
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 324, 483
TseFI GTSAC 2 cut(s) 278, 292
TseI GCWGC 1 cut(s) 442
Tsp45I GTSAC 2 cut(s) 278, 292
TspDTI ATGAA 5 cut(s) 17, 60, 131, 149, 498
TspRI CASTG 2 cut(s) 324, 483
XapI RAATTY 1 cut(s) 426
XceI RCATGY 1 cut(s) 171
XspI CTAG 2 cut(s) 297, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.