Prupe.1G559500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0026645
Physical Location & Seq
Forward (+)
45682052 .. 45682699
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G559500.1

Sequence Viewer

Length: 528 bp
ATGTTCACGCACAGTGAAAAGCAAATGCATAAAAGCCCTATGATAAAATCTAGAAAAACACAACTAGTGTCACACTCTCCTCACATGGAGAATTACTCCATGTTCAGGTTCGATAAACAATCTCAAAGCCGGGCAGTGCTGGAAGCCTGGAATGCAGGGGAGAGTAAGAAGCAAAACTTGGATAGAATAAGAGACAGAATCACCTTCAACTCTGTCATGGCTAAGTGTTGGCAAACAGATATTGCGAGCACCAACTCCAAATGGCATATAAGCCTGAGGAAACTTGCAAGGCCCAAGAACTCCGGGCTCAAATCTTTTCGGATTGAAGTCGAGGGCATCAGGCCCCCAGATATCAGGCAGTTGCTGCAGTATTGGGATTGGAATCTCAATGTTGGTTCCTTTGGGAATTTGAATGTTGTTGAGCTCAATATCTTCCAAGCCTTGTCTTACAACAATCAGGGATGGGGACTGGGAGTACAGGCGCAAGGTTTCTTAGATCACCATGTTCAACTGCCAGGATATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.36

Weight (kDa)

9.89

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026645)

Species Orthologous Gene IDs
prunus_persica Prupe.1G559500_v2.0.a1 Prupe.7G037100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 526
AcsI RAATTY 1 cut(s) 406
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 4 cut(s) 208, 326, 412, 509
AhlI ACTAGT 1 cut(s) 64
AjnI CCWGG 2 cut(s) 146, 514
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 1 cut(s) 424
AluI AGCT 1 cut(s) 424
Alw21I GWGCWC 2 cut(s) 251, 426
Alw26I GTCTC 1 cut(s) 186
AlwNI CAGNNNCTG 1 cut(s) 364
AoxI GGCC 2 cut(s) 290, 341
ApeKI GCWGC 1 cut(s) 364
ApoI RAATTY 1 cut(s) 406
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 2 cut(s) 291, 342
AsuC2I CCSGG 2 cut(s) 131, 304
AsuHPI GGTGA 2 cut(s) 193, 491
AxyI CCTNAGG 1 cut(s) 275
BanII GRGCYC 2 cut(s) 309, 426
Bbv12I GWGCWC 2 cut(s) 251, 426
BbvI GCAGC 1 cut(s) 351
BccI CCATC 1 cut(s) 456
BciT130I CCWGG 2 cut(s) 148, 516
BcnI CCSGG 2 cut(s) 131, 304
BcoDI GTCTC 1 cut(s) 186
BcuI ACTAGT 1 cut(s) 64
BfaI CTAG 2 cut(s) 51, 65
BfmI CTRYAG 1 cut(s) 365
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
Bme1390I CCNGG 4 cut(s) 131, 148, 304, 516
BmgT120I GGNCC 2 cut(s) 291, 342
BmiI GGNNCC 2 cut(s) 344, 397
BmrFI CCNGG 4 cut(s) 131, 148, 304, 516
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 479
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BpuMI CCSGG 2 cut(s) 131, 304
BsaBI GATNNNNATC 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 474
Bse21I CCTNAGG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 2 cut(s) 148, 516
BseGI GGATG 1 cut(s) 467
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 351
BshFI GGCC 2 cut(s) 292, 343
BsiHKAI GWGCWC 2 cut(s) 251, 426
BsiSI CCGG 2 cut(s) 130, 303
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 480
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 2 cut(s) 292, 343
Bsp1286I GDGCHC 3 cut(s) 251, 309, 426
Bsp143I GATC 1 cut(s) 496
BspANI GGCC 2 cut(s) 292, 343
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 344, 397
BspMAI CTGCAG 1 cut(s) 369
BsrI ACTGG 1 cut(s) 474
BssMI GATC 1 cut(s) 496
Bst2UI CCWGG 2 cut(s) 148, 516
Bst4CI ACNGT 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 3 cut(s) 222, 275, 493
BstF5I GGATG 1 cut(s) 467
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 1 cut(s) 496
BstMWI GCNNNNNNNGC 2 cut(s) 152, 364
BstNI CCWGG 2 cut(s) 148, 516
BstSCI CCNGG 4 cut(s) 129, 146, 302, 514
BstSFI CTRYAG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 275
BsuRI GGCC 2 cut(s) 292, 343
BtsCI GGATG 1 cut(s) 467
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 19, 141
Cac8I GCNNGC 1 cut(s) 247
CaiI CAGNNNCTG 1 cut(s) 364
CfoI GCGC 1 cut(s) 484
Cfr13I GGNCC 2 cut(s) 291, 342
Csp6I GTAC 1 cut(s) 476
CviAII CATG 4 cut(s) 85, 100, 217, 503
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 3 cut(s) 222, 275, 493
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
Ecl136II GAGCTC 1 cut(s) 424
Eco24I GRGCYC 2 cut(s) 309, 426
Eco32I GATATC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 424
Eco81I CCTNAGG 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 424
EcoO109I RGGNCCY 1 cut(s) 342
EcoRII CCWGG 2 cut(s) 146, 514
EcoRV GATATC 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 30
EcoT38I GRGCYC 2 cut(s) 309, 426
FaeI CATG 4 cut(s) 88, 103, 220, 506
FaiI YATR 9 cut(s) 30, 41, 86, 101, 218, 267, 269, 504, 526
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 480
FatI CATG 4 cut(s) 84, 99, 216, 502
Fnu4HI GCNGC 1 cut(s) 365
FokI GGATG 1 cut(s) 474
FriOI GRGCYC 2 cut(s) 309, 426
Fsp4HI GCNGC 1 cut(s) 365
FspBI CTAG 2 cut(s) 51, 65
GlaI GCGC 1 cut(s) 483
GluI GCNGC 1 cut(s) 365
HaeIII GGCC 2 cut(s) 292, 343
HapII CCGG 2 cut(s) 130, 303
HhaI GCGC 1 cut(s) 484
Hin1II CATG 4 cut(s) 88, 103, 220, 506
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HinfI GANTC 2 cut(s) 198, 382
HpaII CCGG 2 cut(s) 130, 303
HphI GGTGA 2 cut(s) 193, 491
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4V TGCA 4 cut(s) 28, 155, 287, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 364
HpyF3I CTNAG 3 cut(s) 222, 275, 493
Hsp92II CATG 4 cut(s) 88, 103, 220, 506
HspAI GCGC 1 cut(s) 482
Kzo9I GATC 1 cut(s) 496
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 1 cut(s) 345
MaeI CTAG 2 cut(s) 51, 65
MaeIII GTNAC 1 cut(s) 69
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 1 cut(s) 424
MhlI GDGCHC 3 cut(s) 251, 309, 426
MluCI AATT 2 cut(s) 91, 406
MnlI CCTC 3 cut(s) 90, 270, 325
Mph1103I ATGCAT 1 cut(s) 30
MspI CCGG 2 cut(s) 130, 303
MspR9I CCNGG 4 cut(s) 131, 148, 304, 516
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 2 cut(s) 148, 516
MwoI GCNNNNNNNGC 2 cut(s) 152, 364
NciI CCSGG 2 cut(s) 131, 304
NdeII GATC 1 cut(s) 496
NlaIII CATG 4 cut(s) 88, 103, 220, 506
NlaIV GGNNCC 2 cut(s) 344, 397
NmuCI GTSAC 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 30
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 2 cut(s) 198, 382
PkrI GCNGC 1 cut(s) 366
PsiI TTATAA 1 cut(s) 526
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 146, 514
PspGI CCWGG 2 cut(s) 146, 514
PspN4I GGNNCC 2 cut(s) 344, 397
PspPI GGNCC 2 cut(s) 291, 342
PstI CTGCAG 1 cut(s) 369
PstNI CAGNNNCTG 1 cut(s) 364
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
SacI GAGCTC 1 cut(s) 426
SatI GCNGC 1 cut(s) 365
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 2 cut(s) 291, 342
ScrFI CCNGG 4 cut(s) 131, 148, 304, 516
SduI GDGCHC 3 cut(s) 251, 309, 426
SetI ASST 4 cut(s) 110, 206, 426, 490
SfaNI GCATC 1 cut(s) 345
SfcI CTRYAG 1 cut(s) 365
SpeI ACTAGT 1 cut(s) 64
Sse9I AATT 2 cut(s) 91, 406
SspMI CTAG 2 cut(s) 51, 65
SstI GAGCTC 1 cut(s) 426
StyD4I CCNGG 4 cut(s) 129, 146, 302, 514
TaaI ACNGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 111, 330
TasI AATT 2 cut(s) 91, 406
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 2 cut(s) 198, 382
TscAI CASTG 2 cut(s) 19, 141
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 69
TspRI CASTG 2 cut(s) 19, 141
XapI RAATTY 1 cut(s) 406
XbaI TCTAGA 1 cut(s) 50
XspI CTAG 2 cut(s) 51, 65
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.