Prupe.1G568800_v2.0.a1

ribosomal RNA small subunit methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0024586
Physical Location & Seq
Reverse (-)
46380246 .. 46381090
845 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G568800.1

Sequence Viewer

Length: 237 bp
ATGGCTTCGGCGCCAAGAAATGACGATGAGCCGACGGCCGAAGTTGATTCACAGATGCCACCTGGCGTCGTTTTCCTTCTGACTGGTCTGGAGTTGGTAGAGATAGCTGACTCGCATGCCCTTGAGCCTGAGTTTGAGTATGATGCACCACATGATCCATTTGATGATCTTCTTGCTGCTTATGGAATGGTAGTGAATCCAAGATCGTTTTGTTTCTATTTTACGATTGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005880 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0015630 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034399 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042742 GO:0043009 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
EMG1

Protein Analysis

79

Amino Acids

8.65

Weight (kDa)

4.05

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024586)

Species Orthologous Gene IDs
prunus_persica Prupe.1G568800_v2.0.a1 Prupe.1G568900_v2.0.a1 Prupe.1G568900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 36
AcyI GRCGYC 2 cut(s) 11, 66
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
AlwI GGATC 1 cut(s) 149
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 14
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 2 cut(s) 45, 133
BpmI CTGGAG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 143
BsaHI GRCGYC 2 cut(s) 11, 66
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 88
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 39
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 3 cut(s) 154, 166, 203
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 88
BssMI GATC 3 cut(s) 154, 166, 203
BssNI GRCGYC 2 cut(s) 11, 66
Bst2UI CCWGG 1 cut(s) 63
BstACI GRCGYC 2 cut(s) 11, 66
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 3 cut(s) 157, 169, 206
BstMBI GATC 3 cut(s) 154, 166, 203
BstMCI CGRYCG 1 cut(s) 39
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 163
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 117
CfoI GCGC 1 cut(s) 13
CseI GACGC 1 cut(s) 55
CviAII CATG 2 cut(s) 116, 152
CviJI RGCY 5 cut(s) 5, 31, 38, 107, 127
CviKI_1 RGCY 5 cut(s) 5, 31, 38, 107, 127
DdeI CTNAG 1 cut(s) 129
DinI GGCGCC 1 cut(s) 12
DpnI GATC 3 cut(s) 156, 168, 205
DpnII GATC 3 cut(s) 154, 166, 203
EaeI YGGCCR 1 cut(s) 36
EagI CGGCCG 1 cut(s) 36
EclXI CGGCCG 1 cut(s) 36
Eco52I CGGCCG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 61
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
FaeI CATG 2 cut(s) 119, 155
FaiI YATR 4 cut(s) 117, 141, 153, 183
FatI CATG 2 cut(s) 115, 151
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
GlaI GCGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 1 cut(s) 38
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 2 cut(s) 11, 66
Hin1II CATG 2 cut(s) 119, 155
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 3 cut(s) 47, 110, 196
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 89
Hpy99I CGWCG 2 cut(s) 37, 71
HpyAV CCTTC 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 146, 230
HpyF3I CTNAG 1 cut(s) 129
Hsp92I GRCGYC 2 cut(s) 11, 66
Hsp92II CATG 2 cut(s) 119, 155
HspAI GCGC 1 cut(s) 11
KasI GGCGCC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 154, 166, 203
LpnPI CCDG 5 cut(s) 48, 69, 74, 75, 141
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 2 cut(s) 45, 133
MalI GATC 3 cut(s) 156, 168, 205
MboI GATC 3 cut(s) 154, 166, 203
MboII GAAGA 1 cut(s) 161
Mly113I GGCGCC 1 cut(s) 11
MlyI GAGTC 1 cut(s) 104
MseI TTAA 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
NarI GGCGCC 1 cut(s) 11
NdeII GATC 3 cut(s) 154, 166, 203
NlaIII CATG 2 cut(s) 119, 155
NlaIV GGNNCC 1 cut(s) 12
NspI RCATGY 1 cut(s) 119
PaeI GCATGC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 47, 196
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 104
PluTI GGCGCC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 235
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 154, 166, 203
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 63
SetI ASST 2 cut(s) 64, 109
SfaNI GCATC 2 cut(s) 45, 133
SfoI GGCGCC 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SphI GCATGC 1 cut(s) 119
SspDI GGCGCC 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 61
TfiI GAWTC 2 cut(s) 47, 196
Tru1I TTAA 1 cut(s) 235
Tru9I TTAA 1 cut(s) 235
TseI GCWGC 1 cut(s) 176
XceI RCATGY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.