Prupe.1G568900_v2.0.a1

ribosomal RNA small subunit methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0024586
Physical Location & Seq
Forward (+)
46383820 .. 46386843
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G568900.2_v2.0.a1.CDS.2

Sequence Viewer

Length: 672 bp
ATGGCTTCGGCGCCAAGAAATGACGATGAGCCGACGGCCGAAGTTGATTCACAGATGCCACCTGGCGTCGTTTTCCTTCTGACTGGTCTGGAGTTGGTAGAGATAGCTGACTCGCATGCCCTTGAGCCTGAGTTTGAGTATGATGCACCACATGATCCATTTGATGATCTTCTTGCTGCTTATGGAATGCCTGTGAATATAATTTTGGAGAGCCCCATTAATAAGGCTGGCAGACTGCAAGCTGTGTATGTCAACTCTGGAAGCTCAAATGGCTATTACGAAGTCAAAGGTCATGCCAAAGTTCCAATCGGACCAAAAGGATTTCAGCAAATGTGGCGTGAGCTACATCAGTCTGGTGGGGTTCTACAGCAGGGTACCGAGGCAGTGGCTTGGCACGAGAATTGTGGCATCCCAAGTTTGGTAGAAGGCTTACCTGCAAACTCTCGGAAAATAGGTGTTTTGTCTGGAAAGGGAAGAGGTACTGACCTTGACACGTATATCCTCGCTGCTCCGAGTGATCAGACTCTTGTTTTTGTGGTTGGTGAATTTGCCAATGAGGGGATCGAGAACTACATTGATGAGTATGTGGAAGTTTCTGGGTATTCGCTGGCTCCTTCTGTTTGTGTGGGTCATATATGCTGCGCGTTGGGGAAAAAATGGAATATTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005880 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0015630 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034399 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042742 GO:0043009 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
EMG1

Protein Analysis

224

Amino Acids

23.99

Weight (kDa)

4.53

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024586)

Species Orthologous Gene IDs
prunus_persica Prupe.1G568800_v2.0.a1 Prupe.1G568900_v2.0.a1 Prupe.1G568900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 442
Acc65I GGTACC 1 cut(s) 374
AccB1I GGYRCC 2 cut(s) 10, 374
AccII CGCG 1 cut(s) 644
AclWI GGATC 2 cut(s) 149, 569
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 545
AcyI GRCGYC 2 cut(s) 11, 66
AfaI GTAC 2 cut(s) 376, 481
AfiI CCNNNNNNNGG 2 cut(s) 418, 558
AflIII ACRYGT 1 cut(s) 492
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 4 cut(s) 107, 242, 264, 343
AluI AGCT 4 cut(s) 107, 242, 264, 343
AlwI GGATC 2 cut(s) 149, 569
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 3 cut(s) 176, 506, 639
ApoI RAATTY 1 cut(s) 545
AseI ATTAAT 1 cut(s) 219
Asp718I GGTACC 1 cut(s) 374
AspLEI GCGC 2 cut(s) 13, 644
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 554
AvaII GGWCC 1 cut(s) 311
BanI GGYRCC 2 cut(s) 10, 374
BanII GRGCYC 1 cut(s) 215
BauI CACGAG 1 cut(s) 395
BbvI GCAGC 3 cut(s) 163, 493, 626
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 517
BfmI CTRYAG 1 cut(s) 365
BfoI RGCGCY 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 442
BisI GCNGC 3 cut(s) 177, 507, 640
BlsI GCNGC 3 cut(s) 178, 508, 641
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 3 cut(s) 12, 376, 612
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 3 cut(s) 45, 133, 417
BpmI CTGGAG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 495
BsaHI GRCGYC 2 cut(s) 11, 66
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 558
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 408
BseLI CCNNNNNNNGG 2 cut(s) 418, 558
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 88
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 163, 493, 626
Bsh1236I CGCG 1 cut(s) 644
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 2 cut(s) 10, 374
BsiEI CGRYCG 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 418, 558
BsmI GAATGC 1 cut(s) 192
BsnI GGCC 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 4 cut(s) 154, 166, 517, 561
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 3 cut(s) 12, 376, 612
BspMI ACCTGC 1 cut(s) 442
BspPI GGATC 2 cut(s) 149, 569
BspT107I GGYRCC 2 cut(s) 10, 374
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 4 cut(s) 154, 166, 517, 561
BssNI GRCGYC 2 cut(s) 11, 66
BssSI CACGAG 1 cut(s) 395
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 469
BstACI GRCGYC 2 cut(s) 11, 66
BstBAI YACGTR 1 cut(s) 495
BstC8I GCNNGC 4 cut(s) 117, 229, 240, 609
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 408
BstFNI CGCG 1 cut(s) 644
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 2 cut(s) 13, 644
BstKTI GATC 4 cut(s) 157, 169, 520, 564
BstMBI GATC 4 cut(s) 154, 166, 517, 561
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 270, 334
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 365
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 3 cut(s) 163, 493, 626
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 408
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 390
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 4 cut(s) 117, 229, 240, 609
CfoI GCGC 2 cut(s) 13, 644
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 375, 480
CviAII CATG 3 cut(s) 116, 152, 293
CviQI GTAC 2 cut(s) 375, 480
DdeI CTNAG 1 cut(s) 129
DinI GGCGCC 1 cut(s) 12
DpnI GATC 4 cut(s) 156, 168, 519, 563
DpnII GATC 4 cut(s) 154, 166, 517, 561
EaeI YGGCCR 1 cut(s) 36
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 469
EarI CTCTTC 1 cut(s) 469
EclXI CGGCCG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 311
Eco52I CGGCCG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 215
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
FaeI CATG 3 cut(s) 119, 155, 296
FatI CATG 3 cut(s) 115, 151, 292
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 3 cut(s) 177, 507, 640
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 3 cut(s) 177, 507, 640
GlaI GCGC 2 cut(s) 12, 643
GluI GCNGC 3 cut(s) 177, 507, 640
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 1 cut(s) 38
HgaI GACGC 1 cut(s) 55
HhaI GCGC 2 cut(s) 13, 644
Hin1I GRCGYC 2 cut(s) 11, 66
Hin1II CATG 3 cut(s) 119, 155, 296
Hin6I GCGC 2 cut(s) 11, 642
HinP1I GCGC 2 cut(s) 11, 642
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 3 cut(s) 47, 110, 523
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 5 cut(s) 81, 311, 447, 513, 522
Hpy188III TCNNGA 4 cut(s) 89, 258, 465, 565
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 2 cut(s) 37, 71
HpyAV CCTTC 3 cut(s) 86, 419, 624
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 3 cut(s) 146, 238, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 270, 334
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 494
Hsp92I GRCGYC 2 cut(s) 11, 66
Hsp92II CATG 3 cut(s) 119, 155, 296
HspAI GCGC 2 cut(s) 11, 642
KasI GGCGCC 1 cut(s) 10
KpnI GGTACC 1 cut(s) 378
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 4 cut(s) 154, 166, 517, 561
LmnI GCTCC 2 cut(s) 514, 616
Lsp1109I GCAGC 3 cut(s) 163, 493, 626
LweI GCATC 3 cut(s) 45, 133, 417
MaeII ACGT 1 cut(s) 494
MalI GATC 4 cut(s) 156, 168, 519, 563
MboI GATC 4 cut(s) 154, 166, 517, 561
MboII GAAGA 2 cut(s) 161, 486
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 3 cut(s) 201, 400, 545
Mly113I GGCGCC 1 cut(s) 11
MlyI GAGTC 2 cut(s) 104, 517
MnlI CCTC 4 cut(s) 373, 470, 512, 550
MseI TTAA 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 2 cut(s) 270, 334
NarI GGCGCC 1 cut(s) 11
NdeII GATC 4 cut(s) 154, 166, 517, 561
NlaIII CATG 3 cut(s) 119, 155, 296
NlaIV GGNNCC 3 cut(s) 12, 376, 612
NspI RCATGY 1 cut(s) 119
PaeI GCATGC 1 cut(s) 119
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 3 cut(s) 178, 508, 641
PleI GAGTC 2 cut(s) 104, 517
PluTI GGCGCC 1 cut(s) 14
PpsI GAGTC 2 cut(s) 104, 517
Ppu21I YACGTR 1 cut(s) 495
PshBI ATTAAT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 3 cut(s) 12, 376, 612
PspPI GGNCC 1 cut(s) 311
RsaI GTAC 2 cut(s) 376, 481
RsaNI GTAC 2 cut(s) 375, 480
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 3 cut(s) 177, 507, 640
Sau3AI GATC 4 cut(s) 154, 166, 517, 561
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 2 cut(s) 104, 517
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 215
SfaNI GCATC 3 cut(s) 45, 133, 417
SfcI CTRYAG 1 cut(s) 365
SfoI GGCGCC 1 cut(s) 12
SinI GGWCC 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SphI GCATGC 1 cut(s) 119
Sse9I AATT 3 cut(s) 201, 400, 545
SspDI GGCGCC 1 cut(s) 10
SspI AATATT 1 cut(s) 664
StyD4I CCNGG 1 cut(s) 61
TaiI ACGT 1 cut(s) 497
TaqI TCGA 1 cut(s) 564
TasI AATT 3 cut(s) 201, 400, 545
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 390
TseI GCWGC 3 cut(s) 176, 506, 639
TspRI CASTG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 311
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 1 cut(s) 545
XceI RCATGY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.