Prupe.2G001600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0028952
Physical Location & Seq
Forward (+)
253649 .. 254152
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G001600.1

Sequence Viewer

Length: 504 bp
ATGGGGAGTGAATGCAGCATCAACAAACGCTGTTATGATATTAGCATGTCAAAGAGGACTAGAAAGTCATTTCATTATAGTGTCCCAGTCCCAGATGCCAATCGAACTACGTGTGGAGAAATCATCCCTGCTCTTGAGAGCTTTCTGGATGGCAATGGAGGAGATCAGAGTTCTCCCTCAAAGTCGAGAGTTGAAGATGGGGATCAAGACAATGATAATCGTAAAAGCTTTAAGCAGCTGATCGATGGGGATGAAAAAGCAAAGCTGATCATCAAGTCGGGTGACCAAGGGAGCAGAGCTAGAAGTTCACTAGGCCAACACTTCACTGATGAAGAGAATCACCTTCAACTGGTCAAGAAGCAGCAAAAAGCAGTGAGTTTGCAAGGAGTGAAGCTGAAAAAATTGGTGAGTCGTTGTGCCAAAGTTTTTAGACATTTGGTCAAAGCCGAGAGCGATCCAGGCCTAAGAGAACCCAGGCAGGCTGTTCTTCGTTTAACTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.63

Weight (kDa)

9.43

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028952)

Species Orthologous Gene IDs
prunus_persica Prupe.2G001600_v2.0.a1
pyrus_communis pycom02g26840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 64
AclWI GGATC 2 cut(s) 210, 449
AfiI CCNNNNNNNGG 1 cut(s) 349
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 2 cut(s) 194, 347
AhdI GACNNNNNGTC 1 cut(s) 437
AjnI CCWGG 2 cut(s) 457, 473
AluBI AGCT 6 cut(s) 141, 228, 238, 265, 299, 394
AluI AGCT 6 cut(s) 141, 228, 238, 265, 299, 394
AlwI GGATC 2 cut(s) 210, 449
AoxI GGCC 2 cut(s) 313, 460
ApeKI GCWGC 3 cut(s) 15, 235, 361
AsuHPI GGTGA 3 cut(s) 293, 332, 418
BbvI GCAGC 3 cut(s) 27, 247, 373
BccI CCATC 3 cut(s) 143, 191, 239
BciT130I CCWGG 2 cut(s) 459, 475
BclI TGATCA 1 cut(s) 267
BfaI CTAG 3 cut(s) 60, 300, 311
BisI GCNGC 3 cut(s) 16, 236, 362
BlsI GCNGC 3 cut(s) 17, 237, 363
Bme1390I CCNGG 2 cut(s) 459, 475
BmeRI GACNNNNNGTC 1 cut(s) 437
BmrFI CCNGG 2 cut(s) 459, 475
BmrI ACTGGG 1 cut(s) 80
BmsI GCATC 2 cut(s) 27, 85
BmuI ACTGGG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 111
BsaBI GATNNNNATC 2 cut(s) 99, 201
BsaJI CCNNGG 2 cut(s) 286, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 2 cut(s) 86, 354
Bse3DI GCAATG 1 cut(s) 160
Bse8I GATNNNNATC 2 cut(s) 99, 201
BseBI CCWGG 2 cut(s) 459, 475
BseCI ATCGAT 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 286, 473
BseGI GGATG 3 cut(s) 123, 154, 256
BseJI GATNNNNATC 2 cut(s) 99, 201
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 160
BseNI ACTGG 2 cut(s) 86, 354
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 3 cut(s) 27, 247, 373
BshFI GGCC 2 cut(s) 315, 462
BshVI ATCGAT 1 cut(s) 243
BslFI GGGAC 2 cut(s) 68, 74
BslI CCNNNNNNNGG 1 cut(s) 349
BsmFI GGGAC 2 cut(s) 68, 74
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 2 cut(s) 315, 462
Bsp143I GATC 5 cut(s) 163, 202, 240, 267, 454
BspANI GGCC 2 cut(s) 315, 462
BspDI ATCGAT 1 cut(s) 243
BspPI GGATC 2 cut(s) 210, 449
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 2 cut(s) 86, 354
BssECI CCNNGG 2 cut(s) 286, 473
BssMI GATC 5 cut(s) 163, 202, 240, 267, 454
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 2 cut(s) 459, 475
Bst6I CTCTTC 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 1 cut(s) 464
BstEII GGTNACC 1 cut(s) 281
BstF5I GGATG 3 cut(s) 123, 154, 256
BstKTI GATC 5 cut(s) 166, 205, 243, 270, 457
BstMBI GATC 5 cut(s) 163, 202, 240, 267, 454
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 2 cut(s) 459, 475
BstNSI RCATGY 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 457, 473
BstV1I GCAGC 3 cut(s) 27, 247, 373
Bsu15I ATCGAT 1 cut(s) 243
BsuRI GGCC 2 cut(s) 315, 462
BsuTUI ATCGAT 1 cut(s) 243
BtsCI GGATG 3 cut(s) 123, 154, 256
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 324, 378
Cac8I GCNNGC 1 cut(s) 480
ClaI ATCGAT 1 cut(s) 243
CviAII CATG 1 cut(s) 46
DdeI CTNAG 1 cut(s) 464
DpnI GATC 5 cut(s) 165, 204, 242, 269, 456
DpnII GATC 5 cut(s) 163, 202, 240, 267, 454
DrdI GACNNNNNNGTC 1 cut(s) 64
DriI GACNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 327
Eam1105I GACNNNNNGTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 286
Eco147I AGGCCT 1 cut(s) 462
Eco91I GGTNACC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 457, 473
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 36, 47, 78, 500
FaqI GGGAC 2 cut(s) 68, 74
FatI CATG 1 cut(s) 45
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 16, 236, 362
FokI GGATG 3 cut(s) 110, 161, 263
Fsp4HI GCNGC 3 cut(s) 16, 236, 362
FspBI CTAG 3 cut(s) 60, 300, 311
GluI GCNGC 3 cut(s) 16, 236, 362
HaeIII GGCC 2 cut(s) 315, 462
Hin1II CATG 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 2 cut(s) 337, 409
HphI GGTGA 3 cut(s) 293, 332, 418
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 5 cut(s) 134, 146, 186, 206, 355
Hpy8I GTNNAC 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 353
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 15, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpyF3I CTNAG 1 cut(s) 464
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 5 cut(s) 163, 202, 240, 267, 454
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 3 cut(s) 27, 247, 373
LweI GCATC 2 cut(s) 27, 85
MaeI CTAG 3 cut(s) 60, 300, 311
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 281
MalI GATC 5 cut(s) 165, 204, 242, 269, 456
MboI GATC 5 cut(s) 163, 202, 240, 267, 454
MboII GAAGA 3 cut(s) 206, 344, 479
MluCI AATT 1 cut(s) 401
MlyI GAGTC 1 cut(s) 418
MnlI CCTC 3 cut(s) 48, 152, 187
MseI TTAA 2 cut(s) 231, 494
MslI CAYNNNNRTG 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 238
MspR9I CCNGG 2 cut(s) 459, 475
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 2 cut(s) 459, 475
MwoI GCNNNNNNNGC 1 cut(s) 459
NdeII GATC 5 cut(s) 163, 202, 240, 267, 454
NlaIII CATG 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 472
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 1 cut(s) 49
PceI AGGCCT 1 cut(s) 462
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 3 cut(s) 17, 237, 363
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
Ppu21I YACGTR 1 cut(s) 111
Psp6I CCWGG 2 cut(s) 457, 473
PspEI GGTNACC 1 cut(s) 281
PspGI CCWGG 2 cut(s) 457, 473
PvuII CAGCTG 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 2 cut(s) 231, 494
SatI GCNGC 3 cut(s) 16, 236, 362
Sau3AI GATC 5 cut(s) 163, 202, 240, 267, 454
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 459, 475
SetI ASST 8 cut(s) 113, 143, 230, 240, 267, 301, 345, 396
SfaNI GCATC 2 cut(s) 27, 85
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 401
SseBI AGGCCT 1 cut(s) 462
SspMI CTAG 3 cut(s) 60, 300, 311
StuI AGGCCT 1 cut(s) 462
StyD4I CCNGG 2 cut(s) 457, 473
StyI CCWWGG 1 cut(s) 286
TaiI ACGT 1 cut(s) 113
TaqI TCGA 3 cut(s) 103, 185, 243
TasI AATT 1 cut(s) 401
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 2 cut(s) 231, 494
Tru9I TTAA 2 cut(s) 231, 494
TscAI CASTG 2 cut(s) 331, 378
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 3 cut(s) 15, 235, 361
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 62, 267, 345
TspRI CASTG 2 cut(s) 331, 378
XceI RCATGY 1 cut(s) 49
XspI CTAG 3 cut(s) 60, 300, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.