Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0028934

Physical Location & Seq

Genomic Coordinates Reverse (-)

2399702 .. 2400551

Gene Structure 850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G024100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGCCGACTCATCTTCGAGGAGGCTTAAACATGATGTTTCAGTTGGCAACTACGCTAGGAATCTTCATAGCAAACATGGTAAACTATGGAACACAAAAGCTCGAACCATGGGGTTGGAGGCTCTCTCTAGGCCTGGCTATAGTACCTGCTATAGTAATGACAGTGGGAGGAATATTTCTTCATGAGACACCAAATAGCTTAATTGAACGAGGAAGTAAAGAAGAAGGACGAAAACTTCTGGAGAGAATCAAAGGAATTGAAAATGTCAATGCAGAGTTTCAGGACATGTTAGATGCAAGTGAGTTTGCTAGTGCAATAAAGCACCCTTTCAGAAACATCCTGGAGAGAAGGAACAGGCCTCAACTGGTTATGGCAATCTTCATGCCAACATTCCAGATCCTCACAGGCATAAATTCAATTCTCTTCTATGCTCCAGTGTTGTTTCAAAGTATGGGGTTTGGGGGAAATGCCGCTCTTTACTCCTTTGCTTTAACTGGAGCAGTTCTTTTTTTGTCTACACTGATATCTACTGCAATAGTTGACAAGCTCGGTCGAAGAGTTTTGCTTATTAGTGATGGAATAATAATGATTATATGCCAGTTCGGTGAGAATCAAGAGCTATCAAAAGGATATTCAGTATTGGTGGTGGCAGTGATCTGCCTCTTCGTGGTAGCTTTCAGATGGTCATGGGGTCCGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015750 GO:0015751 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0042882 GO:0042900 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

235

Amino Acids

25.91

Weight (kDa)

9.0

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028934)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G554800_v2.0.a1 Prupe.2G024100_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	518
AciI	CCGC	2 cut(s)	474, 698
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	4 cut(s)	209, 263, 420, 449
AjnI	CCWGG	2 cut(s)	135, 342
AluBI	AGCT	5 cut(s)	103, 201, 550, 622, 677
AluI	AGCT	5 cut(s)	103, 201, 550, 622, 677
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	2 cut(s)	133, 359
ApoI	RAATTY	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	695
AsuHPI	GGTGA	1 cut(s)	620
AvaII	GGWCC	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	4
BccI	CCATC	2 cut(s)	572, 678
BciT130I	CCWGG	2 cut(s)	137, 344
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	3 cut(s)	59, 131, 312
BfmI	CTRYAG	2 cut(s)	141, 153
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
Bme1390I	CCNGG	2 cut(s)	137, 344
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	2 cut(s)	6, 696
BmrFI	CCNGG	2 cut(s)	137, 344
BmsI	GCATC	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
BpmI	CTGGAG	4 cut(s)	263, 365, 420, 519
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	4 cut(s)	372, 437, 502, 601
BseBI	CCWGG	2 cut(s)	137, 344
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseNI	ACTGG	4 cut(s)	372, 437, 502, 601
BseRI	GAGGAG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	2 cut(s)	135, 361
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	556
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	135, 361
Bsp143I	GATC	2 cut(s)	399, 657
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	2 cut(s)	474, 698
BspANI	GGCC	2 cut(s)	135, 361
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	6, 696
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	476
BsrI	ACTGG	4 cut(s)	372, 437, 502, 601
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	2 cut(s)	399, 657
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	2 cut(s)	137, 344
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	3 cut(s)	431, 553, 671
BstACI	GRCGYC	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	402, 660
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	399, 657
BstMCI	CGRYCG	1 cut(s)	556
BstNI	CCWGG	2 cut(s)	137, 344
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	135, 342
BstSFI	CTRYAG	2 cut(s)	141, 153
BstX2I	RGATCY	1 cut(s)	399
BstXI	CCANNNNNNTGG	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	135, 361
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	4 cut(s)	171, 444, 521, 660
BveI	ACCTGC	1 cut(s)	157
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	695
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	7 cut(s)	34, 79, 111, 185, 289, 385, 690
CviQI	GTAC	1 cut(s)	146
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	401, 659
DpnII	GATC	2 cut(s)	399, 657
Eam1104I	CTCTTC	3 cut(s)	431, 553, 671
EarI	CTCTTC	3 cut(s)	431, 553, 671
Eco130I	CCWWGG	1 cut(s)	110
Eco147I	AGGCCT	2 cut(s)	135, 361
Eco32I	GATATC	1 cut(s)	528
Eco47I	GGWCC	1 cut(s)	695
EcoRII	CCWGG	2 cut(s)	135, 342
EcoRV	GATATC	1 cut(s)	528
EcoT14I	CCWWGG	1 cut(s)	110
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	7 cut(s)	37, 82, 114, 188, 292, 388, 693
FatI	CATG	7 cut(s)	33, 78, 110, 184, 288, 384, 689
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	3 cut(s)	59, 131, 312
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	474
GsuI	CTGGAG	4 cut(s)	263, 365, 420, 519
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	135, 361
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	37, 82, 114, 188, 292, 388, 693
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	4 cut(s)	10, 63, 249, 613
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	3 cut(s)	85, 519, 544
Hpy188I	TCNGA	2 cut(s)	335, 683
Hpy188III	TCNNGA	5 cut(s)	185, 242, 284, 397, 617
Hpy8I	GTNNAC	3 cut(s)	85, 519, 544
HpyAV	CCTTC	2 cut(s)	221, 345
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	4 cut(s)	275, 299, 317, 536
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	37, 82, 114, 188, 292, 388, 693
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	399, 657
LmnI	GCTCC	2 cut(s)	439, 500
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	3 cut(s)	59, 131, 312
MalI	GATC	2 cut(s)	401, 659
MbiI	CCGCTC	1 cut(s)	476
MboI	GATC	2 cut(s)	399, 657
MboII	GAAGA	8 cut(s)	8, 58, 173, 236, 373, 418, 570, 658
MflI	RGATCY	1 cut(s)	399
MluCI	AATT	4 cut(s)	204, 258, 415, 420
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	8 cut(s)	14, 17, 114, 164, 206, 372, 413, 674
MseI	TTAA	3 cut(s)	29, 203, 494
MspR9I	CCNGG	2 cut(s)	137, 344
MvaI	CCWGG	2 cut(s)	137, 344
NarI	GGCGCC	1 cut(s)	5
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	399, 657
NlaIII	CATG	7 cut(s)	37, 82, 114, 188, 292, 388, 693
NlaIV	GGNNCC	2 cut(s)	6, 696
NspI	RCATGY	1 cut(s)	292
PagI	TCATGA	1 cut(s)	184
PceI	AGGCCT	2 cut(s)	135, 361
PciI	ACATGT	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	63, 249, 613
PfoI	TCCNGGA	1 cut(s)	342
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	1 cut(s)	4
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	4
PscI	ACATGT	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	135, 342
PspGI	CCWGG	2 cut(s)	135, 342
PspN4I	GGNNCC	2 cut(s)	6, 696
PspPI	GGNCC	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	29, 203, 494
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	2 cut(s)	399, 657
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	137, 344
SetI	ASST	6 cut(s)	105, 151, 203, 552, 624, 679
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	2 cut(s)	141, 153
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	695
Sse9I	AATT	4 cut(s)	204, 258, 415, 420
SseBI	AGGCCT	2 cut(s)	135, 361
SsiI	CCGC	2 cut(s)	474, 698
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	3 cut(s)	59, 131, 312
StuI	AGGCCT	2 cut(s)	135, 361
StyD4I	CCNGG	2 cut(s)	135, 342
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	3 cut(s)	19, 105, 556
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	4 cut(s)	204, 258, 415, 420
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	3 cut(s)	63, 249, 613
Tru1I	TTAA	3 cut(s)	29, 203, 494
Tru9I	TTAA	3 cut(s)	29, 203, 494
TscAI	CASTG	4 cut(s)	171, 444, 528, 660
TspDTI	ATGAA	3 cut(s)	58, 173, 373
TspRI	CASTG	4 cut(s)	171, 444, 528, 660
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	1 cut(s)	415
XceI	RCATGY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	3 cut(s)	59, 131, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.