Prupe.2G090800_v2.0.a1
MYB Family

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0024368
Physical Location & Seq
Reverse (-)
14347653 .. 14351353
3701 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G090800.1

Sequence Viewer

Length: 1476 bp
ATGGCTTCCTCCGACGATTTCCCTCTGATCGACTCCTCCTCTCACCTCCACGCGCCGCCGCGCCCCCGCGACACAATCGACTCCACCACCACCGCCAACAACGGCGATTTCTTCCCCCGACCCTTCCCCGACGACCCGGACCGGAGTCCGAACCAGACCCGAACCCCCAACACTAAACGGAGCTCTTACTACTACAAAAAACTCAAACCCTCCTCCGCAAACCCTAACCCTACCACCAGCACTACCGAAGCCGAGTCCTCCAGCGGACAGGAAATGGCGTCGCAGCGGGGTGACTATCGGAAGGACCGCGAGGAGTGGAGCGACACGGCCATCGCGTGTCTTCTAGAAGCCTTTACTGAGAAATTCAATCAGCTGAACAGGGGAAACCTGAGAGGGAGGGACTGGGAGGAGGTGGCTGAGATGGTCAGCGAGCGATGTGGGACTGGTGGTGGTAACAAGTCAACGTACAAGACCGTAGAGCAGTGCAAGAATAAGATTGACAATTTGAAGAAAAGGTACAAGGTGGAGCTGCAGAGGATCACTAGTAGTGGGTTGGGGGCCAGTCATTGGCATTGGTTCAAGAAGCTTGAGGTCATTCTGGGGAGTTCTCTTGTGCCTAAAGGCGGCGGTGGTTCGGATGAGGAACGCAGTGGTGGCAGAGCCAATTCTAATGTGGCTAAGCAGCCTAAGAGATACACACCTGGCAGCACTGGATTTACAAACAACCTGAAATCCAAATCGATGCCAAATGTAAAATGGAAAAGAGTAATGCTTAAAATTAGTGGTGCTGCGTTAGCTGGGGACTGCCAGAGCATCGACCCCAAGGTAGCAACGCAGATTGCTGAGGAAGTGGCAAGAGCTTGCCGTCTTGGAGTGGAGGTAGCAATCGTTGTTGGAGGCTGTAATTTCTTTTGTGGAGACACATGGGTGTCTTCTACTGGATTGGATAGATCTGCAGCATACCAAATTGGTATGATGGCAACAGTCATGAATTCTGTACTACTTCAATCAGCTTTAGAGAAGGTAGGTGTTCAGGCACGGGTCCAAACAGCATTAACAATGCCAGAGGTTTCTGAGCCATATAACAGGCTTCGAGCCATACGACATCTTGAGAAAGGCAGAGTTGTTATATTTGGTGGAATTGGTGCTGGCACTGGAAATTATCTCTTCACCACTGATATTGCAGCAGCCTTGCGAGCTTCTGAGCTTAATGCAGAGGCGGTCCTTAAGGGTACAAACTTTAACGGCATATATGAGTGTCATTCTGGTAGCAACAGTGTCACTGTTGATCATACTTGCTATAGGGAGGTTGTTTCTAGAGGCATTACCTCTGTGGACGTCATGGCATTAACATACTGTGAAGAGAATGGAATTCCTGTTGTAATTTTCAATTTGCTGGAACCTGGAAATATTTCAAGAGCTTTATGCGGAGACCAAGTTGGAACTTTGATTGATCAGGCAGGAAGGATTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_kinase Myb_DNA-bind_4

Protein Analysis

492

Amino Acids

53.39

Weight (kDa)

8.52

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024368)

Species Orthologous Gene IDs
malus_domestica MD02G1244500.v1.1
prunus_persica Prupe.2G090800_v2.0.a1
pyrus_communis pycom02g21040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1341
AccB7I CCANNNNNTGG 1 cut(s) 567
AccII CGCG 5 cut(s) 53, 61, 69, 309, 335
AclWI GGATC 1 cut(s) 545
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 3 cut(s) 362, 991, 1371
AcyI GRCGYC 2 cut(s) 278, 1338
AfaI GTAC 4 cut(s) 467, 518, 999, 1234
AfiI CCNNNNNNNGG 2 cut(s) 567, 623
AflII CTTAAG 1 cut(s) 1226
AgsI TTSAA 6 cut(s) 367, 508, 580, 1007, 1390, 1416
AhlI ACTAGT 1 cut(s) 542
AjnI CCWGG 2 cut(s) 700, 1402
AleI CACNNNNGTG 1 cut(s) 926
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 2 cut(s) 912, 1425
AlwI GGATC 1 cut(s) 545
AoxI GGCC 2 cut(s) 327, 558
ApeKI GCWGC 8 cut(s) 283, 529, 682, 705, 788, 956, 1184, 1187
ApoI RAATTY 3 cut(s) 362, 991, 1371
Asp700I GAANNNNTTC 1 cut(s) 1411
AspLEI GCGC 2 cut(s) 55, 63
AspS9I GGNCC 5 cut(s) 139, 304, 558, 1042, 1222
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 3 cut(s) 35, 302, 1162
AvaII GGWCC 4 cut(s) 139, 304, 1042, 1222
BanII GRGCYC 1 cut(s) 185
BarI GAAGNNNNNNTAC 2 cut(s) 500, 532
BbsI GAAGAC 2 cut(s) 332, 924
Bbv12I GWGCWC 1 cut(s) 185
BbvCI CCTCAGC 1 cut(s) 843
BbvI GCAGC 8 cut(s) 295, 516, 694, 717, 775, 968, 1196, 1199
BccI CCATC 3 cut(s) 338, 415, 970
BceAI ACGGC 4 cut(s) 118, 342, 849, 1261
BciT130I CCWGG 2 cut(s) 702, 1404
BclI TGATCA 2 cut(s) 1288, 1453
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 2 cut(s) 912, 1425
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 3 cut(s) 344, 543, 1317
BfmI CTRYAG 3 cut(s) 530, 954, 1300
BfrI CTTAAG 1 cut(s) 1226
BglII AGATCT 1 cut(s) 950
BlpI GCTNAGC 1 cut(s) 678
Bme1390I CCNGG 3 cut(s) 137, 702, 1404
Bme18I GGWCC 4 cut(s) 139, 304, 1042, 1222
BmgT120I GGNCC 5 cut(s) 139, 304, 558, 1042, 1222
BmiI GGNNCC 3 cut(s) 559, 1043, 1401
BmrFI CCNGG 3 cut(s) 137, 702, 1404
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 2 cut(s) 732, 822
BmuI ACTGGG 1 cut(s) 412
BoxI GACNNNNGTC 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 332, 924
BpmI CTGGAG 1 cut(s) 244
Bpu10I CCTNAGC 1 cut(s) 843
Bpu1102I GCTNAGC 1 cut(s) 678
BpuEI CTTGAG 2 cut(s) 608, 1130
BpuMI CCSGG 1 cut(s) 137
Bsa29I ATCGAT 1 cut(s) 740
BsaHI GRCGYC 2 cut(s) 278, 1338
BsaI GGTCTC 1 cut(s) 1425
BsaJI CCNNGG 1 cut(s) 822
BsaWI WCCGGW 1 cut(s) 141
BsaXI ACNNNNNCTCC 4 cut(s) 864, 894, 1422, 1452
Bsc4I CCNNNNNNNGG 2 cut(s) 567, 623
Bse1I ACTGG 6 cut(s) 407, 448, 561, 715, 943, 1159
BseBI CCWGG 2 cut(s) 702, 1404
BseCI ATCGAT 1 cut(s) 740
BseDI CCNNGG 1 cut(s) 822
BseGI GGATG 1 cut(s) 643
BseLI CCNNNNNNNGG 2 cut(s) 567, 623
BseMII CTCAG 6 cut(s) 348, 380, 408, 834, 1065, 1194
BseNI ACTGG 6 cut(s) 407, 448, 561, 715, 943, 1159
BseRI GAGGAG 5 cut(s) 25, 28, 202, 326, 422
BseXI GCAGC 8 cut(s) 295, 516, 694, 717, 775, 968, 1196, 1199
BseYI CCCAGC 1 cut(s) 797
Bsh1236I CGCG 5 cut(s) 53, 61, 69, 309, 335
BshFI GGCC 2 cut(s) 329, 560
BshVI ATCGAT 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 2 cut(s) 137, 142
BslFI GGGAC 3 cut(s) 413, 454, 815
BslI CCNNNNNNNGG 2 cut(s) 567, 623
BsmAI GTCTC 2 cut(s) 912, 1425
BsmFI GGGAC 3 cut(s) 413, 454, 815
BsnI GGCC 2 cut(s) 329, 560
Bso31I GGTCTC 1 cut(s) 1425
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 5 cut(s) 27, 537, 950, 1288, 1453
Bsp1720I GCTNAGC 1 cut(s) 678
BspANI GGCC 2 cut(s) 329, 560
BspCNI CTCAG 6 cut(s) 349, 381, 409, 835, 1066, 1195
BspDI ATCGAT 1 cut(s) 740
BspFNI CGCG 5 cut(s) 53, 61, 69, 309, 335
BspHI TCATGA 1 cut(s) 987
BspLI GGNNCC 3 cut(s) 559, 1043, 1401
BspMAI CTGCAG 2 cut(s) 534, 958
BspPI GGATC 1 cut(s) 545
BspTI CTTAAG 1 cut(s) 1226
BspTNI GGTCTC 1 cut(s) 1425
BsrI ACTGG 6 cut(s) 407, 448, 561, 715, 943, 1159
BssECI CCNNGG 1 cut(s) 822
BssMI GATC 5 cut(s) 27, 537, 950, 1288, 1453
BssNI GRCGYC 2 cut(s) 278, 1338
BssT1I CCWWGG 1 cut(s) 822
Bst2UI CCWGG 2 cut(s) 702, 1404
Bst4CI ACNGT 5 cut(s) 475, 985, 1277, 1285, 1358
Bst6I CTCTTC 2 cut(s) 1172, 1356
BstACI GRCGYC 2 cut(s) 278, 1338
BstAFI CTTAAG 1 cut(s) 1226
BstC8I GCNNGC 4 cut(s) 431, 862, 1150, 1197
BstDEI CTNAG 8 cut(s) 357, 389, 417, 678, 687, 843, 1074, 1203
BstF5I GGATG 1 cut(s) 643
BstFNI CGCG 5 cut(s) 53, 61, 69, 309, 335
BstHHI GCGC 2 cut(s) 55, 63
BstKTI GATC 5 cut(s) 30, 540, 953, 1291, 1456
BstMAI GTCTC 2 cut(s) 912, 1425
BstMBI GATC 5 cut(s) 27, 537, 950, 1288, 1453
BstMWI GCNNNNNNNGC 3 cut(s) 654, 794, 1196
BstNI CCWGG 2 cut(s) 702, 1404
BstPAI GACNNNNGTC 1 cut(s) 144
BstSCI CCNGG 3 cut(s) 135, 700, 1402
BstSFI CTRYAG 3 cut(s) 530, 954, 1300
BstUI CGCG 5 cut(s) 53, 61, 69, 309, 335
BstV1I GCAGC 8 cut(s) 295, 516, 694, 717, 775, 968, 1196, 1199
BstV2I GAAGAC 2 cut(s) 332, 924
BstX2I RGATCY 1 cut(s) 950
BstYI RGATCY 1 cut(s) 950
Bsu15I ATCGAT 1 cut(s) 740
BsuRI GGCC 2 cut(s) 329, 560
BsuTUI ATCGAT 1 cut(s) 740
BtgZI GCGATG 2 cut(s) 316, 448
BtsCI GGATG 1 cut(s) 643
BtsI GCAGTG 2 cut(s) 488, 655
BtsIMutI CAGTG 7 cut(s) 488, 655, 708, 1152, 1173, 1281, 1282
Cac8I GCNNGC 4 cut(s) 431, 862, 1150, 1197
CciI TCATGA 1 cut(s) 987
CfoI GCGC 2 cut(s) 55, 63
Cfr13I GGNCC 5 cut(s) 139, 304, 558, 1042, 1222
ClaI ATCGAT 1 cut(s) 740
CpoI CGGWCCG 1 cut(s) 139
CseI GACGC 1 cut(s) 267
Csp6I GTAC 4 cut(s) 466, 517, 998, 1233
CspCI CAANNNNNGTGG 2 cut(s) 1162, 1197
CspI CGGWCCG 1 cut(s) 139
CviAII CATG 3 cut(s) 924, 988, 1342
CviQI GTAC 4 cut(s) 466, 517, 998, 1233
DdeI CTNAG 8 cut(s) 357, 389, 417, 678, 687, 843, 1074, 1203
DpnI GATC 5 cut(s) 29, 539, 952, 1290, 1455
DpnII GATC 5 cut(s) 27, 537, 950, 1288, 1453
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 1172, 1356
EarI CTCTTC 2 cut(s) 1172, 1356
Ecl136II GAGCTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 822
Eco24I GRGCYC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 1425
Eco47I GGWCC 4 cut(s) 139, 304, 1042, 1222
Eco53kI GAGCTC 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 183
EcoRI GAATTC 2 cut(s) 991, 1371
EcoRII CCWGG 2 cut(s) 700, 1402
EcoT14I CCWWGG 1 cut(s) 822
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 822
FaeI CATG 3 cut(s) 927, 991, 1345
FaqI GGGAC 3 cut(s) 413, 454, 815
FatI CATG 3 cut(s) 923, 987, 1341
FauI CCCGC 2 cut(s) 74, 279
FbaI TGATCA 2 cut(s) 1288, 1453
FokI GGATG 1 cut(s) 650
FriOI GRGCYC 1 cut(s) 185
FspBI CTAG 3 cut(s) 344, 543, 1317
GlaI GCGC 2 cut(s) 54, 62
GsaI CCCAGC 1 cut(s) 801
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 2 cut(s) 329, 560
HapII CCGG 2 cut(s) 137, 142
HgaI GACGC 1 cut(s) 267
HhaI GCGC 2 cut(s) 55, 63
Hin1I GRCGYC 2 cut(s) 278, 1338
Hin1II CATG 3 cut(s) 927, 991, 1345
Hin6I GCGC 2 cut(s) 53, 61
HinP1I GCGC 2 cut(s) 53, 61
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 4 cut(s) 32, 80, 145, 254
HpaII CCGG 2 cut(s) 137, 142
HphI GGTGA 3 cut(s) 35, 302, 1162
Hpy166II GTNNAC 2 cut(s) 462, 1336
Hpy188I TCNGA 7 cut(s) 13, 27, 150, 300, 637, 1075, 1204
Hpy188III TCNNGA 6 cut(s) 344, 580, 988, 1109, 1317, 1416
Hpy8I GTNNAC 2 cut(s) 462, 1336
Hpy99I CGWCG 3 cut(s) 17, 134, 283
HpyAV CCTTC 4 cut(s) 133, 295, 1015, 1458
HpyCH4III ACNGT 5 cut(s) 475, 985, 1277, 1285, 1358
HpyCH4IV ACGT 2 cut(s) 464, 1338
HpyCH4V TGCA 5 cut(s) 486, 532, 956, 1184, 1214
HpyF10VI GCNNNNNNNGC 3 cut(s) 654, 794, 1196
HpyF3I CTNAG 8 cut(s) 357, 389, 417, 678, 687, 843, 1074, 1203
HpySE526I ACGT 2 cut(s) 464, 1338
Hsp92I GRCGYC 2 cut(s) 278, 1338
Hsp92II CATG 3 cut(s) 927, 991, 1345
HspAI GCGC 2 cut(s) 53, 61
Ksp22I TGATCA 2 cut(s) 1288, 1453
Kzo9I GATC 5 cut(s) 27, 537, 950, 1288, 1453
LmnI GCTCC 3 cut(s) 180, 318, 526
Lsp1109I GCAGC 8 cut(s) 295, 516, 694, 717, 775, 968, 1196, 1199
LweI GCATC 2 cut(s) 732, 822
MaeI CTAG 3 cut(s) 344, 543, 1317
MaeII ACGT 2 cut(s) 464, 1338
MaeIII GTNAC 3 cut(s) 290, 452, 1279
MalI GATC 5 cut(s) 29, 539, 952, 1290, 1455
MboI GATC 5 cut(s) 27, 537, 950, 1288, 1453
MboII GAAGA 6 cut(s) 103, 332, 520, 924, 1159, 1373
MflI RGATCY 1 cut(s) 950
MhlI GDGCHC 1 cut(s) 185
MlyI GAGTC 4 cut(s) 26, 74, 154, 263
MmeI TCCRAC 3 cut(s) 36, 874, 1420
MroXI GAANNNNTTC 1 cut(s) 1411
MseI TTAA 6 cut(s) 774, 1055, 1209, 1227, 1242, 1349
MslI CAYNNNNRTG 1 cut(s) 926
MspA1I CMGCKG 3 cut(s) 264, 286, 373
MspCI CTTAAG 1 cut(s) 1226
MspI CCGG 2 cut(s) 137, 142
MspR9I CCNGG 3 cut(s) 137, 702, 1404
MvaI CCWGG 2 cut(s) 702, 1404
MvnI CGCG 5 cut(s) 53, 61, 69, 309, 335
MwoI GCNNNNNNNGC 3 cut(s) 654, 794, 1196
NciI CCSGG 1 cut(s) 137
NdeII GATC 5 cut(s) 27, 537, 950, 1288, 1453
NlaIII CATG 3 cut(s) 927, 991, 1345
NlaIV GGNNCC 3 cut(s) 559, 1043, 1401
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 2 cut(s) 290, 1279
OliI CACNNNNGTG 1 cut(s) 926
PagI TCATGA 1 cut(s) 987
PcsI WCGNNNNNNNCGW 2 cut(s) 332, 1099
PdmI GAANNNNTTC 1 cut(s) 1411
PflMI CCANNNNNTGG 1 cut(s) 567
PleI GAGTC 4 cut(s) 26, 74, 153, 262
PpsI GAGTC 4 cut(s) 26, 74, 153, 262
PshAI GACNNNNGTC 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 2 cut(s) 700, 1402
PspFI CCCAGC 1 cut(s) 797
PspGI CCWGG 2 cut(s) 700, 1402
PspN4I GGNNCC 3 cut(s) 559, 1043, 1401
PspPI GGNCC 5 cut(s) 139, 304, 558, 1042, 1222
PstI CTGCAG 2 cut(s) 534, 958
PsuI RGATCY 1 cut(s) 950
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 4 cut(s) 467, 518, 999, 1234
RsaNI GTAC 4 cut(s) 466, 517, 998, 1233
RseI CAYNNNNRTG 1 cut(s) 926
Rsr2I CGGWCCG 1 cut(s) 139
RsrII CGGWCCG 1 cut(s) 139
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 6 cut(s) 774, 1055, 1209, 1227, 1242, 1349
Sau3AI GATC 5 cut(s) 27, 537, 950, 1288, 1453
Sau96I GGNCC 5 cut(s) 139, 304, 558, 1042, 1222
SchI GAGTC 4 cut(s) 26, 74, 154, 263
ScrFI CCNGG 3 cut(s) 137, 702, 1404
SduI GDGCHC 1 cut(s) 185
SfaNI GCATC 2 cut(s) 732, 822
SfcI CTRYAG 3 cut(s) 530, 954, 1300
SinI GGWCC 4 cut(s) 139, 304, 1042, 1222
SmiMI CAYNNNNRTG 1 cut(s) 926
SmlI CTYRAG 3 cut(s) 587, 1109, 1226
SmoI CTYRAG 3 cut(s) 587, 1109, 1226
SpeI ACTAGT 1 cut(s) 542
SspI AATATT 1 cut(s) 1411
SspMI CTAG 3 cut(s) 344, 543, 1317
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 3 cut(s) 135, 700, 1402
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 5 cut(s) 475, 985, 1277, 1285, 1358
TaiI ACGT 2 cut(s) 467, 1341
TaqI TCGA 5 cut(s) 30, 78, 740, 816, 1093
TatI WGTACW 1 cut(s) 997
TauI GCSGC 3 cut(s) 58, 61, 627
Tru1I TTAA 6 cut(s) 774, 1055, 1209, 1227, 1242, 1349
Tru9I TTAA 6 cut(s) 774, 1055, 1209, 1227, 1242, 1349
TscAI CASTG 7 cut(s) 488, 655, 715, 1159, 1180, 1282, 1288
TseFI GTSAC 2 cut(s) 290, 1279
TseI GCWGC 8 cut(s) 283, 529, 682, 705, 788, 956, 1184, 1187
Tsp45I GTSAC 2 cut(s) 290, 1279
TspDTI ATGAA 1 cut(s) 1004
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 7 cut(s) 488, 655, 715, 1159, 1180, 1282, 1288
Van91I CCANNNNNTGG 1 cut(s) 567
Vha464I CTTAAG 1 cut(s) 1226
VpaK11BI GGWCC 4 cut(s) 139, 304, 1042, 1222
XapI RAATTY 3 cut(s) 362, 991, 1371
XbaI TCTAGA 2 cut(s) 343, 1316
XcmI CCANNNNNNNNNTGG 2 cut(s) 670, 753
XmnI GAANNNNTTC 1 cut(s) 1411
XspI CTAG 3 cut(s) 344, 543, 1317
ZraI GACGTC 1 cut(s) 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.