Prupe.2G108900_v2.0.a1
MYB Family

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0028937
Physical Location & Seq
Forward (+)
16734061 .. 16736078
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G108900.1

Sequence Viewer

Length: 1125 bp
ATGAGCAGCACACCAAATGCTTCGCAACCAGCTGCCAATTGCTCTGGATTTCAATCAAACAATGCTCAAGGAAATTTTTCCACCACCAATCCAAGCCCTAAGCTCATATATACAGATATTCCATATAGCTTCGGGAGAAACGGTACAAATAGAGTTCATATTGGTACCAATCCTGTGCAGATGTACCAACAAAAGGCTCAAGAAACCCCACAGCCTTTCACAACTACTGGAAATGGAAATTCCAATAATGATTCAAGGAATAGTTCTAATATTGTGATGACCTCCTACACCAACAACAGCTATGGTACTGGAATGCAAATGACTATTACTAGTACTGCCAGCGGAGGAAGGCTTGCTGGACACATGGCCCCAACTCAGACGGTGTTCAATAATGTAGACTGGGATTCAAATGGTGTCAATAATAATTGTGGTGATTTGGTGATCAATAATGGTACTCAAAATGATGATCAAAACAGGAATGTTCCACAAGTGGATAATGTGGTATTCGGTTATGATTTTTCCCAAAAGGAGTCTTCATCATCTCTTGGATTTTCTGGTTCTAGCAGCAGCCAATTCTCACCAATACTTGCTGAAGGAAATAATGCTGGACAAGGCAATGTTAATGTTTCAGAACTTGATCAAATAGTGCAACAATGTGGTGCTCTTTTCAGCTCTTCCAACAACAGCAGCCAAGTTACAGTAGTGCACAGTTCTTCTAGCTCCACTGAGATATCATCATCATACCAGAAAGACAATGATGATGCATTTGATCTTAGTGTTCTCCTTCTTAATGAACTTCGTTTGGAATCTATTAAAAATGATCAGGTAAAAGGAAAACAAGCCATCGATTCTGATAAAGACACTGATATTGACTTTGATCTCTTTTTGAATGAAAATCATTTTGGAACTGTTAATGATGATGATAAGGGAAAGGGAAAACAAGTCATGAATTTTGATCCTAGTGCAAGTGTGGTCCAAGAGAGTTCTCCCTTAAACAAAGAATCCCTTGTCCAGCATAATGGAGACCTCGTGGACCTCGAGTTCGATGGATTGAATATGGCATCACCAGAAAATCTCTCTCTTGATGAAGATTGGGAGAACATTGTGGAGTCATTATTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

375

Amino Acids

40.38

Weight (kDa)

4.25

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028937)

Species Orthologous Gene IDs
prunus_persica Prupe.2G108900_v2.0.a1 Prupe.2G108900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 164
AccI GTMKAC 1 cut(s) 396
AciI CCGC 1 cut(s) 342
AclWI GGATC 1 cut(s) 950
AcsI RAATTY 3 cut(s) 73, 238, 949
AcuI CTGAAG 1 cut(s) 612
AfaI GTAC 6 cut(s) 145, 166, 185, 307, 334, 454
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 7 cut(s) 53, 255, 388, 408, 889, 1054, 1120
AhlI ACTAGT 1 cut(s) 329
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AloI GAACNNNNNNTCC 2 cut(s) 1025, 1057
AluBI AGCT 6 cut(s) 32, 103, 129, 300, 672, 720
AluI AGCT 6 cut(s) 32, 103, 129, 300, 672, 720
Alw21I GWGCWC 2 cut(s) 664, 708
Alw26I GTCTC 1 cut(s) 1017
Alw44I GTGCAC 1 cut(s) 704
AlwI GGATC 1 cut(s) 950
Ama87I CYCGRG 1 cut(s) 1037
AoxI GGCC 1 cut(s) 366
ApaLI GTGCAC 1 cut(s) 704
ApeKI GCWGC 5 cut(s) 6, 32, 564, 567, 687
ApoI RAATTY 3 cut(s) 73, 238, 949
ArsI GACNNNNNNTTYG 2 cut(s) 1025, 1057
Asp700I GAANNNNTTC 1 cut(s) 76
Asp718I GGTACC 1 cut(s) 164
AspS9I GGNCC 3 cut(s) 367, 973, 1033
AsuHPI GGTGA 4 cut(s) 443, 451, 570, 1056
AvaI CYCGRG 1 cut(s) 1037
AvaII GGWCC 2 cut(s) 973, 1033
BaeGI GKGCMC 1 cut(s) 708
BanI GGYRCC 1 cut(s) 164
BauI CACGAG 1 cut(s) 1028
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 2 cut(s) 664, 708
BbvI GCAGC 5 cut(s) 18, 19, 576, 579, 699
BccI CCATC 2 cut(s) 851, 1040
BclI TGATCA 4 cut(s) 441, 466, 637, 820
BcoDI GTCTC 1 cut(s) 1017
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 4 cut(s) 330, 561, 717, 960
BisI GCNGC 5 cut(s) 7, 33, 565, 568, 688
BlsI GCNGC 5 cut(s) 8, 34, 566, 569, 689
BmcAI AGTACT 1 cut(s) 334
Bme18I GGWCC 2 cut(s) 973, 1033
BmeT110I CYCGRG 1 cut(s) 1037
BmgT120I GGNCC 3 cut(s) 367, 973, 1033
BmiI GGNNCC 2 cut(s) 166, 369
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 2 cut(s) 751, 1070
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 525
Bpu10I CCTNAGC 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 51, 183
Bsa29I ATCGAT 1 cut(s) 846
BsaBI GATNNNNATC 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 1017
BsaXI ACNNNNNCTCC 4 cut(s) 127, 157, 1014, 1044
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 3 cut(s) 232, 313, 404
Bse3DI GCAATG 1 cut(s) 622
Bse8I GATNNNNATC 1 cut(s) 52
BseCI ATCGAT 1 cut(s) 846
BseJI GATNNNNATC 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 2 cut(s) 389, 717
BseNI ACTGG 3 cut(s) 232, 313, 404
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 5 cut(s) 18, 19, 576, 579, 699
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 368
BshNI GGYRCC 1 cut(s) 164
BshVI ATCGAT 1 cut(s) 846
BsiHKAI GWGCWC 2 cut(s) 664, 708
BsiHKCI CYCGRG 1 cut(s) 1037
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 1017
BsmI GAATGC 1 cut(s) 318
BsnI GGCC 1 cut(s) 368
Bso31I GGTCTC 1 cut(s) 1017
BsoBI CYCGRG 1 cut(s) 1037
Bsp1286I GDGCHC 2 cut(s) 664, 708
Bsp143I GATC 7 cut(s) 441, 466, 637, 769, 820, 877, 955
BspACI CCGC 1 cut(s) 342
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 2 cut(s) 388, 718
BspDI ATCGAT 1 cut(s) 846
BspHI TCATGA 1 cut(s) 945
BspLI GGNNCC 2 cut(s) 166, 369
BspPI GGATC 1 cut(s) 950
BspQI GCTCTTC 1 cut(s) 679
BspT107I GGYRCC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 1017
BsrDI GCAATG 1 cut(s) 622
BsrI ACTGG 3 cut(s) 232, 313, 404
BssMI GATC 7 cut(s) 441, 466, 637, 769, 820, 877, 955
BssSI CACGAG 1 cut(s) 1028
Bst2BI CACGAG 1 cut(s) 1028
Bst4CI ACNGT 5 cut(s) 143, 382, 700, 710, 910
Bst6I CTCTTC 1 cut(s) 679
BstC8I GCNNGC 2 cut(s) 340, 354
BstDEI CTNAG 4 cut(s) 99, 375, 726, 773
BstKTI GATC 7 cut(s) 444, 469, 640, 772, 823, 880, 958
BstMAI GTCTC 1 cut(s) 1017
BstMBI GATC 7 cut(s) 441, 466, 637, 769, 820, 877, 955
BstSLI GKGCMC 1 cut(s) 708
BstV1I GCAGC 5 cut(s) 18, 19, 576, 579, 699
BstV2I GAAGAC 1 cut(s) 525
BstXI CCANNNNNNTGG 1 cut(s) 1019
Bsu15I ATCGAT 1 cut(s) 846
BsuRI GGCC 1 cut(s) 368
BsuTUI ATCGAT 1 cut(s) 846
BtsIMutI CAGTG 2 cut(s) 723, 861
Cac8I GCNNGC 2 cut(s) 340, 354
CciI TCATGA 1 cut(s) 945
Cfr13I GGNCC 3 cut(s) 367, 973, 1033
ClaI ATCGAT 1 cut(s) 846
Csp6I GTAC 6 cut(s) 144, 165, 184, 306, 333, 453
CviAII CATG 2 cut(s) 364, 946
CviQI GTAC 6 cut(s) 144, 165, 184, 306, 333, 453
DdeI CTNAG 4 cut(s) 99, 375, 726, 773
DpnI GATC 7 cut(s) 443, 468, 639, 771, 822, 879, 957
DpnII GATC 7 cut(s) 441, 466, 637, 769, 820, 877, 955
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
Eco31I GGTCTC 1 cut(s) 1017
Eco32I GATATC 1 cut(s) 732
Eco47I GGWCC 2 cut(s) 973, 1033
Eco57I CTGAAG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 1037
EcoRV GATATC 1 cut(s) 732
EcoT22I ATGCAT 1 cut(s) 766
FaeI CATG 2 cut(s) 367, 949
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FatI CATG 2 cut(s) 363, 945
FbaI TGATCA 4 cut(s) 441, 466, 637, 820
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 5 cut(s) 7, 33, 565, 568, 688
Fsp4HI GCNGC 5 cut(s) 7, 33, 565, 568, 688
FspBI CTAG 4 cut(s) 330, 561, 717, 960
GluI GCNGC 5 cut(s) 7, 33, 565, 568, 688
HaeIII GGCC 1 cut(s) 368
Hin1II CATG 2 cut(s) 367, 949
HinfI GANTC 7 cut(s) 251, 404, 530, 806, 848, 1001, 1109
HphI GGTGA 4 cut(s) 443, 451, 570, 1056
Hpy166II GTNNAC 3 cut(s) 397, 706, 1033
Hpy188I TCNGA 3 cut(s) 378, 631, 853
Hpy188III TCNNGA 5 cut(s) 45, 133, 200, 946, 1082
Hpy8I GTNNAC 3 cut(s) 397, 706, 1033
HpyAV CCTTC 3 cut(s) 342, 587, 794
HpyCH4III ACNGT 5 cut(s) 143, 382, 700, 710, 910
HpyCH4V TGCA 6 cut(s) 178, 316, 649, 706, 764, 965
HpyF3I CTNAG 4 cut(s) 99, 375, 726, 773
Hsp92II CATG 2 cut(s) 367, 949
KpnI GGTACC 1 cut(s) 168
Ksp22I TGATCA 4 cut(s) 441, 466, 637, 820
Kzo9I GATC 7 cut(s) 441, 466, 637, 769, 820, 877, 955
LguI GCTCTTC 1 cut(s) 679
LmnI GCTCC 1 cut(s) 725
Lsp1109I GCAGC 5 cut(s) 18, 19, 576, 579, 699
LweI GCATC 2 cut(s) 751, 1070
MaeI CTAG 4 cut(s) 330, 561, 717, 960
MaeIII GTNAC 1 cut(s) 694
MalI GATC 7 cut(s) 443, 468, 639, 771, 822, 879, 957
MboI GATC 7 cut(s) 441, 466, 637, 769, 820, 877, 955
MboII GAAGA 4 cut(s) 525, 666, 705, 1100
MfeI CAATTG 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 664, 708
MluCI AATT 6 cut(s) 37, 73, 238, 424, 572, 949
MlyI GAGTC 2 cut(s) 539, 1118
MmeI TCCRAC 1 cut(s) 702
MnlI CCTC 4 cut(s) 292, 338, 1037, 1046
Mph1103I ATGCAT 1 cut(s) 766
MroXI GAANNNNTTC 1 cut(s) 76
MseI TTAA 5 cut(s) 621, 789, 813, 912, 992
MspA1I CMGCKG 2 cut(s) 32, 342
MunI CAATTG 1 cut(s) 37
Mva1269I GAATGC 1 cut(s) 318
NdeII GATC 7 cut(s) 441, 466, 637, 769, 820, 877, 955
NlaIII CATG 2 cut(s) 367, 949
NlaIV GGNNCC 2 cut(s) 166, 369
NsiI ATGCAT 1 cut(s) 766
PaeR7I CTCGAG 1 cut(s) 1037
PagI TCATGA 1 cut(s) 945
PciSI GCTCTTC 1 cut(s) 679
PcsI WCGNNNNNNNCGW 1 cut(s) 1035
PctI GAATGC 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 76
PfeI GAWTC 5 cut(s) 251, 404, 806, 848, 1001
PkrI GCNGC 5 cut(s) 8, 34, 566, 569, 689
PleI GAGTC 2 cut(s) 538, 1117
PpsI GAGTC 2 cut(s) 538, 1117
PspN4I GGNNCC 2 cut(s) 166, 369
PspPI GGNCC 3 cut(s) 367, 973, 1033
PspXI VCTCGAGB 1 cut(s) 1037
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 6 cut(s) 145, 166, 185, 307, 334, 454
RsaNI GTAC 6 cut(s) 144, 165, 184, 306, 333, 453
SapI GCTCTTC 1 cut(s) 679
SaqAI TTAA 5 cut(s) 621, 789, 813, 912, 992
SatI GCNGC 5 cut(s) 7, 33, 565, 568, 688
Sau3AI GATC 7 cut(s) 441, 466, 637, 769, 820, 877, 955
Sau96I GGNCC 3 cut(s) 367, 973, 1033
ScaI AGTACT 1 cut(s) 334
SchI GAGTC 2 cut(s) 539, 1118
SduI GDGCHC 2 cut(s) 664, 708
SfaNI GCATC 2 cut(s) 751, 1070
Sfr274I CTCGAG 1 cut(s) 1037
SinI GGWCC 2 cut(s) 973, 1033
SlaI CTCGAG 1 cut(s) 1037
SmlI CTYRAG 3 cut(s) 66, 198, 1037
SmoI CTYRAG 3 cut(s) 66, 198, 1037
SpeI ACTAGT 1 cut(s) 329
Sse9I AATT 6 cut(s) 37, 73, 238, 424, 572, 949
SsiI CCGC 1 cut(s) 342
SspI AATATT 1 cut(s) 271
SspMI CTAG 4 cut(s) 330, 561, 717, 960
TaaI ACNGT 5 cut(s) 143, 382, 700, 710, 910
TaqI TCGA 3 cut(s) 846, 1038, 1044
TasI AATT 6 cut(s) 37, 73, 238, 424, 572, 949
TatI WGTACW 1 cut(s) 332
TfiI GAWTC 5 cut(s) 251, 404, 806, 848, 1001
Tru1I TTAA 5 cut(s) 621, 789, 813, 912, 992
Tru9I TTAA 5 cut(s) 621, 789, 813, 912, 992
TscAI CASTG 2 cut(s) 730, 868
TseI GCWGC 5 cut(s) 6, 32, 564, 567, 687
TspDTI ATGAA 6 cut(s) 146, 525, 807, 906, 962, 1101
TspRI CASTG 2 cut(s) 730, 868
VneI GTGCAC 1 cut(s) 704
VpaK11BI GGWCC 2 cut(s) 973, 1033
XapI RAATTY 3 cut(s) 73, 238, 949
XhoI CTCGAG 1 cut(s) 1037
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 4 cut(s) 330, 561, 717, 960
ZrmI AGTACT 1 cut(s) 334
Zsp2I ATGCAT 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.