Prupe.2G209400_v2.0.a1

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0024380
Physical Location & Seq
Reverse (-)
24234360 .. 24234785
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G209400.1

Sequence Viewer

Length: 426 bp
ATGTCGTCGTCGGCATCAAAGAGTAGGGTTGTGAGGTTGAGGAGCGCAAACAATGAAATATTCGAAGTAGAAGAAGCAATTGTAGCACTGTCCGAGCCCATCAAAAACCTCATCGACGTCATCGGTGTCAACCATGTGATACCAATGCCAGACGTGAGGTCCAAAACCCTAGCCATGGTGATAGAGTGGTGCAAGTACCATGCTGCTTCTGATCAGGGCCCTAGAAACACTAAAGAACTCATCAAAGAGTGGGAGGAAGAGCTCGACCAAGCTGACCTCGTCATTGATCTCTTATGCACTGCAAGCTTTCTCTGCATCAAGGACTTGCAAGATCAAATGTTTCAAAGGGTTGCCGATTTGATTAAAGTGAAGACACTTGAGGAGATTTGCGAATTGTTTCACGTCAAAAACGATTTTTCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

142

Amino Acids

16.03

Weight (kDa)

4.87

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024380)

Species Orthologous Gene IDs
malus_domestica MD01G1103600.v1.1
prunus_persica Prupe.2G209400_v2.0.a1
pyrus_communis pycom01g13010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 344
AhdI GACNNNNNGTC 1 cut(s) 157
AjiI CACGTC 2 cut(s) 154, 403
AluBI AGCT 3 cut(s) 262, 272, 306
AluI AGCT 3 cut(s) 262, 272, 306
Alw21I GWGCWC 1 cut(s) 264
AoxI GGCC 1 cut(s) 217
ApaI GGGCCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 3 cut(s) 159, 217, 218
AsuHPI GGTGA 1 cut(s) 190
AsuII TTCGAA 1 cut(s) 63
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 221
BanII GRGCYC 3 cut(s) 99, 221, 264
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 107
BclI TGATCA 1 cut(s) 211
BfaI CTAG 3 cut(s) 170, 222, 424
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 159
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgBI CACGTC 2 cut(s) 154, 403
BmgT120I GGNCC 3 cut(s) 159, 217, 218
BmiI GGNNCC 1 cut(s) 219
BmsI GCATC 2 cut(s) 23, 324
BpiI GAAGAC 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 175
BseRI GAGGAG 2 cut(s) 55, 395
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 63
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 3 cut(s) 99, 221, 264
Bsp143I GATC 3 cut(s) 211, 286, 331
Bsp19I CCATGG 1 cut(s) 174
BspANI GGCC 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 219
BspQI GCTCTTC 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 3 cut(s) 211, 286, 331
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 117
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 304
BstDSI CCRYGG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 3 cut(s) 214, 289, 334
BstMBI GATC 3 cut(s) 211, 286, 331
BstMWI GCNNNNNNNGC 3 cut(s) 83, 303, 312
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 377
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 174
BtrI CACGTC 2 cut(s) 154, 403
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 86, 297
Cac8I GCNNGC 1 cut(s) 304
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 3 cut(s) 159, 217, 218
Csp6I GTAC 1 cut(s) 196
CviAII CATG 3 cut(s) 134, 175, 200
CviJI RGCY 6 cut(s) 97, 173, 219, 262, 272, 306
CviKI_1 RGCY 6 cut(s) 97, 173, 219, 262, 272, 306
CviQI GTAC 1 cut(s) 196
DpnI GATC 3 cut(s) 213, 288, 333
DpnII GATC 3 cut(s) 211, 286, 331
DriI GACNNNNNGTC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 252
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 3 cut(s) 99, 221, 264
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 262
EcoO109I RGGNCCY 2 cut(s) 217, 218
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 3 cut(s) 99, 221, 264
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 3 cut(s) 137, 178, 203
FaiI YATR 4 cut(s) 135, 176, 201, 295
FatI CATG 3 cut(s) 133, 174, 199
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 204
FriOI GRGCYC 3 cut(s) 99, 221, 264
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 3 cut(s) 170, 222, 424
GlaI GCGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 204
HaeIII GGCC 1 cut(s) 219
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 3 cut(s) 137, 178, 203
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 304
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 94, 211
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 3 cut(s) 10, 13, 119
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 3 cut(s) 117, 153, 402
HpyCH4V TGCA 5 cut(s) 192, 297, 302, 315, 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 303, 312
HpySE526I ACGT 3 cut(s) 117, 153, 402
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 3 cut(s) 137, 178, 203
HspAI GCGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 211, 286, 331
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 2 cut(s) 162, 200
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 23, 324
MaeI CTAG 3 cut(s) 170, 222, 424
MaeII ACGT 3 cut(s) 117, 153, 402
MalI GATC 3 cut(s) 213, 288, 333
MboI GATC 3 cut(s) 211, 286, 331
MboII GAAGA 4 cut(s) 83, 269, 382, 411
MfeI CAATTG 1 cut(s) 78
MhlI GDGCHC 3 cut(s) 99, 221, 264
MluCI AATT 2 cut(s) 78, 392
MnlI CCTC 7 cut(s) 27, 33, 119, 150, 247, 287, 373
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 1 cut(s) 363
MunI CAATTG 1 cut(s) 78
MwoI GCNNNNNNNGC 3 cut(s) 83, 303, 312
NcoI CCATGG 1 cut(s) 174
NdeII GATC 3 cut(s) 211, 286, 331
NlaIII CATG 3 cut(s) 137, 178, 203
NlaIV GGNNCC 1 cut(s) 219
NspV TTCGAA 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 252
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 396
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 219
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 3 cut(s) 159, 217, 218
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SacI GAGCTC 1 cut(s) 264
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 3 cut(s) 211, 286, 331
Sau96I GGNCC 3 cut(s) 159, 217, 218
SduI GDGCHC 3 cut(s) 99, 221, 264
SfaNI GCATC 2 cut(s) 23, 324
SfuI TTCGAA 1 cut(s) 63
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 2 cut(s) 78, 392
SspI AATATT 1 cut(s) 60
SspMI CTAG 3 cut(s) 170, 222, 424
SstI GAGCTC 1 cut(s) 264
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 3 cut(s) 120, 156, 405
TaqI TCGA 3 cut(s) 63, 114, 264
TasI AATT 2 cut(s) 78, 392
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 93, 304
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 2 cut(s) 93, 304
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 3 cut(s) 170, 222, 424
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.