Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0017745

Physical Location & Seq

Genomic Coordinates Forward (+)

25749482 .. 25750688

Gene Structure 1207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G235500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTGCGGCGGCGGCGTCCTCTACACTACCAACACTTACTGGTGTCTGATTCAGAGACGGAATCCGACGATCTAAGTGAACATTTTAAGGCTCAAACATCATTGATAAAAAGATGGGGAAAACGAATTGCAAAGGAAGGATCTAAAAAAGTTGTGCTGAAGATTGCAAAACATTATCAAGAACAGATGAAACATATTCCGATCCCGAAGAATCGCCGGAAGGACGCCGTCTTCGTCACGTGGTGGGCACTAGCAAATTCCATGAAGCAGTTTTATGGGCAGCCATTGCACTACATGACTCAAGTTCTGGTAAAGCAGTGGGATGAGTCAAGAATTGGCAGTGTGGAAGAAGAGAAGCCGATGGACAACATTATTCATCCAAGGAGAGCTGAATCTACCATTTGGGACGTTGAACAAGTCCACAGGCAATGCACTTCTCACATTCATTTGGCTAAGCTCTGGCTTTCTGACCCCGACTACTATTCTTTTGTTGATGAGGTCATCCCCTCGTCCAAGCTGGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdDM_RDM1

Protein Analysis

176

Amino Acids

20.76

Weight (kDa)

9.38

Isoelectric Point (pI)

69.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017745)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G235500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0367131
rosa_laevigata	RLG00000027295
rosa_multiflora	Rmu_sc0007844.1_g000004 Rmu_sc0017251.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289590
rosa_rugosa	Rorug01G0334900
rosa_samantha	Rh1AG341600 Rh1BG302100 Rh1CG318500 Rh1DG334600
rosa_wichuraiana	Rw1G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	7, 10, 13
AclWI	GGATC	2 cut(s)	148, 196
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	179
AcvI	CACGTG	1 cut(s)	240
AcyI	GRCGYC	2 cut(s)	16, 225
AdeI	CACNNNGTG	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	413
AluBI	AGCT	3 cut(s)	389, 457, 517
AluI	AGCT	3 cut(s)	389, 457, 517
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	2 cut(s)	148, 196
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	256
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
BaeGI	GKGCMC	1 cut(s)	250
BbrPI	CACGTG	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	2 cut(s)	108, 355
BceAI	ACGGC	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	4 cut(s)	8, 11, 14, 281
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	4 cut(s)	9, 12, 15, 282
BpiI	GAAGAC	1 cut(s)	223
Bpu1102I	GCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	240
BsaHI	GRCGYC	2 cut(s)	16, 225
BsaJI	CCNNGG	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	2 cut(s)	284, 434
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	3 cut(s)	328, 376, 501
BseMI	GCAATG	2 cut(s)	284, 434
BseNI	ACTGG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	217
BslFI	GGGAC	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	50
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	70, 140, 201
Bsp1720I	GCTNAGC	1 cut(s)	453
BspACI	CCGC	3 cut(s)	7, 10, 13
BspPI	GGATC	2 cut(s)	148, 196
BsrDI	GCAATG	2 cut(s)	284, 434
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	3 cut(s)	70, 140, 201
BssNI	GRCGYC	2 cut(s)	16, 225
BssT1I	CCWWGG	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	2 cut(s)	16, 225
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstBAI	YACGTR	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	74, 453
BstF5I	GGATG	3 cut(s)	328, 376, 501
BstKTI	GATC	3 cut(s)	73, 143, 204
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	3 cut(s)	70, 140, 201
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 286
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BtsCI	GGATG	3 cut(s)	328, 376, 501
BtsI	GCAGTG	2 cut(s)	323, 346
BtsIMutI	CAGTG	2 cut(s)	323, 346
CseI	GACGC	2 cut(s)	5, 233
CviAII	CATG	3 cut(s)	262, 295, 525
CviJI	RGCY	8 cut(s)	92, 283, 358, 389, 452, 457, 463, 517
CviKI_1	RGCY	8 cut(s)	92, 283, 358, 389, 452, 457, 463, 517
DdeI	CTNAG	2 cut(s)	74, 453
DpnI	GATC	3 cut(s)	72, 142, 203
DpnII	GATC	3 cut(s)	70, 140, 201
DraIII	CACNNNGTG	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	179
Eco72I	CACGTG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	3 cut(s)	265, 298, 528
FaiI	YATR	5 cut(s)	195, 263, 276, 296, 526
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	261, 294, 524
Fnu4HI	GCNGC	4 cut(s)	8, 11, 14, 281
FokI	GGATG	3 cut(s)	335, 363, 488
Fsp4HI	GCNGC	4 cut(s)	8, 11, 14, 281
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	4 cut(s)	8, 11, 14, 281
HapII	CCGG	1 cut(s)	217
HgaI	GACGC	2 cut(s)	5, 233
Hin1I	GRCGYC	2 cut(s)	16, 225
Hin1II	CATG	3 cut(s)	265, 298, 528
HinfI	GANTC	6 cut(s)	50, 62, 211, 298, 326, 392
HpaII	CCGG	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	80, 421
Hpy188I	TCNGA	5 cut(s)	49, 55, 67, 201, 469
Hpy188III	TCNNGA	3 cut(s)	179, 205, 330
Hpy8I	GTNNAC	2 cut(s)	80, 421
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	131, 214
HpyCH4IV	ACGT	2 cut(s)	239, 408
HpyCH4V	TGCA	5 cut(s)	131, 167, 289, 432, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 286
HpyF3I	CTNAG	2 cut(s)	74, 453
HpySE526I	ACGT	2 cut(s)	239, 408
Hsp92I	GRCGYC	2 cut(s)	16, 225
Hsp92II	CATG	3 cut(s)	265, 298, 528
Kzo9I	GATC	3 cut(s)	70, 140, 201
LpnPI	CCDG	6 cut(s)	26, 230, 293, 409, 445, 503
Lsp1109I	GCAGC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	2 cut(s)	239, 408
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	3 cut(s)	72, 142, 203
MboI	GATC	3 cut(s)	70, 140, 201
MboII	GAAGA	5 cut(s)	172, 220, 223, 359, 362
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	3 cut(s)	126, 256, 333
MlyI	GAGTC	2 cut(s)	292, 335
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	30, 490, 517
MseI	TTAA	1 cut(s)	87
MspI	CCGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	13, 286
NdeII	GATC	3 cut(s)	70, 140, 201
NlaIII	CATG	3 cut(s)	265, 298, 528
NmuCI	GTSAC	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	4 cut(s)	50, 62, 211, 392
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	9, 12, 15, 282
PleI	GAGTC	2 cut(s)	292, 334
PmaCI	CACGTG	1 cut(s)	240
PmlI	CACGTG	1 cut(s)	240
PpsI	GAGTC	2 cut(s)	292, 334
Ppu21I	YACGTR	1 cut(s)	240
PspCI	CACGTG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	140
PsyI	GACNNNGTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	4 cut(s)	8, 11, 14, 281
Sau3AI	GATC	3 cut(s)	70, 140, 201
SchI	GAGTC	2 cut(s)	292, 335
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	6 cut(s)	242, 391, 411, 459, 501, 519
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	3 cut(s)	126, 256, 333
SsiI	CCGC	3 cut(s)	7, 10, 13
SspMI	CTAG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	380
TaiI	ACGT	2 cut(s)	242, 411
TasI	AATT	3 cut(s)	126, 256, 333
TauI	GCSGC	3 cut(s)	10, 13, 16
TfiI	GAWTC	4 cut(s)	50, 62, 211, 392
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	2 cut(s)	323, 346
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	203, 278, 365, 434
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	323, 346
Tth111I	GACNNNGTC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	256
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.