Prupe.2G306900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
29191173 .. 29192105
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G306900.1

Sequence Viewer

Length: 234 bp
ATGGAGTCAGCTACTAGGTTTGAAGTGGGAAGAGGAAGAGACGATGAAGGGAAGCAGCAGCAAAGGGACTTCTTTAAAATGCCATTGCACTACCCAAACTATTCAAAAGCCGACTACGACAGCATGCCTGAATGGAAGCTCGACCGCCTTCTGTCTGAATACGGCCTTCCAGTTGTTGGAAGTGTGGAGCACAAGAAGAAATTTGCCATGGGAGCTTTCCTTTGGCCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

9.08

Weight (kDa)

6.83

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023569)

Species Orthologous Gene IDs
malus_domestica MD07G1284700.v1.1
prunus_persica Prupe.2G306900_v2.0.a1
pyrus_communis pycom07g25850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 176
AciI CCGC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 23, 105
AluBI AGCT 3 cut(s) 11, 139, 215
AluI AGCT 3 cut(s) 11, 139, 215
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 33
AoxI GGCC 2 cut(s) 163, 224
ApeKI GCWGC 2 cut(s) 55, 58
ApoI RAATTY 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 67, 70
BceAI ACGGC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 15
BisI GCNGC 2 cut(s) 56, 59
BlsI GCNGC 2 cut(s) 57, 60
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 67, 70
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 2 cut(s) 165, 226
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 33
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 2 cut(s) 165, 226
Bsp1286I GDGCHC 1 cut(s) 192
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 1 cut(s) 145
BspANI GGCC 2 cut(s) 165, 226
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 207
Bst6I CTCTTC 2 cut(s) 25, 31
BstC8I GCNNGC 1 cut(s) 125
BstDSI CCRYGG 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 33
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 67, 70
BsuRI GGCC 2 cut(s) 165, 226
BtgI CCRYGG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 125
CviAII CATG 2 cut(s) 124, 208
CviJI RGCY 6 cut(s) 11, 110, 139, 165, 215, 226
CviKI_1 RGCY 6 cut(s) 11, 110, 139, 165, 215, 226
DraI TTTAAA 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 25, 31
EarI CTCTTC 2 cut(s) 25, 31
Eco130I CCWWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 2 cut(s) 127, 211
FaiI YATR 2 cut(s) 125, 209
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 123, 207
Fnu4HI GCNGC 2 cut(s) 56, 59
Fsp4HI GCNGC 2 cut(s) 56, 59
FspBI CTAG 1 cut(s) 15
GluI GCNGC 2 cut(s) 56, 59
HaeIII GGCC 2 cut(s) 165, 226
Hin1II CATG 2 cut(s) 127, 211
HinfI GANTC 1 cut(s) 5
Hpy188I TCNGA 1 cut(s) 157
HpyAV CCTTC 3 cut(s) 41, 158, 176
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
Hsp92II CATG 2 cut(s) 127, 211
LmnI GCTCC 2 cut(s) 187, 212
LpnPI CCDG 2 cut(s) 141, 183
Lsp1109I GCAGC 2 cut(s) 67, 70
MaeI CTAG 1 cut(s) 15
MboII GAAGA 3 cut(s) 42, 48, 208
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 1 cut(s) 26
MseI TTAA 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 212
NcoI CCATGG 1 cut(s) 207
NlaIII CATG 2 cut(s) 127, 211
NspI RCATGY 1 cut(s) 127
PaeI GCATGC 1 cut(s) 127
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 2 cut(s) 57, 60
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 2 cut(s) 56, 59
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 192
SetI ASST 4 cut(s) 13, 20, 141, 217
SgeI CNNG 7 cut(s) 27, 136, 140, 152, 182, 205, 220
SphI GCATGC 1 cut(s) 127
Sse9I AATT 1 cut(s) 200
SsiI CCGC 1 cut(s) 145
SspMI CTAG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 207
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 200
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 2 cut(s) 55, 58
TspDTI ATGAA 1 cut(s) 60
Van91I CCANNNNNTGG 1 cut(s) 176
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 127
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.