Prupe.3G088800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
6594237 .. 6595515
1279 bp
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UTR
Exon/CDS
Intron
Prupe.3G088800.1

Sequence Viewer

Length: 345 bp
ATGCCTGTTTTTGTTGCAACAAAACAAGCTCTCGTGTTTGATGTAAAACCTCAAAGCTCAAGACCCATTTTTGGAACCATCTTCTTCTTCATTTCTTGTGTGTGGTTTGGCCCCTTTGGTGGGTTTTCTTCTTTCTCCCCTGTCGGTGCCTTGAGAAGAAATCTAGGTCGGGGGGAAGAAATCGGGTCTGGGTTTCTAGGTTCGTGGGGATGTGGTTGCAGGCTGGGGTGTGGTATAGTTTGCAGGTGGTGGTGTCATGGGGTAGAGAGCAGAGAGAAGAGAGAGCTGGGTTCTGGGTTCGTTGCAGAGACGGAGAGAGAGAGAGAACGTTTGAGAATTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.75

Weight (kDa)

9.18

Isoelectric Point (pI)

63.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029119)

Species Orthologous Gene IDs
prunus_persica Prupe.1G174600_v2.0.a1 Prupe.3G088800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 234
Acc36I ACCTGC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 146
AclI AACGTT 1 cut(s) 328
AcsI RAATTY 1 cut(s) 336
AfiI CCNNNNNNNGG 3 cut(s) 71, 119, 120
AluBI AGCT 3 cut(s) 29, 57, 286
AluI AGCT 3 cut(s) 29, 57, 286
Alw26I GTCTC 1 cut(s) 302
AoxI GGCC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 110
BanI GGYRCC 1 cut(s) 146
BauI CACGAG 1 cut(s) 32
BccI CCATC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 2 cut(s) 164, 197
BfuAI ACCTGC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 3 cut(s) 76, 112, 148
BpuEI CTTGAG 2 cut(s) 43, 172
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 119, 120
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 3 cut(s) 71, 119, 120
BseYI CCCAGC 2 cut(s) 223, 286
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 146
BslI CCNNNNNNNGG 3 cut(s) 71, 119, 120
BsmAI GTCTC 1 cut(s) 302
BsmBI CGTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 111
BspANI GGCC 1 cut(s) 111
BspLI GGNNCC 3 cut(s) 76, 112, 148
BspMI ACCTGC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 146
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 221
BstF5I GGATG 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 215
BveI ACCTGC 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 110
CviAII CATG 1 cut(s) 257
CviJI RGCY 5 cut(s) 29, 57, 111, 223, 286
CviKI_1 RGCY 5 cut(s) 29, 57, 111, 223, 286
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 1 cut(s) 260
FaiI YATR 2 cut(s) 236, 258
FatI CATG 1 cut(s) 256
FokI GGATG 1 cut(s) 222
FspBI CTAG 2 cut(s) 164, 197
GsaI CCCAGC 2 cut(s) 227, 290
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 1 cut(s) 260
Hpy188III TCNNGA 1 cut(s) 60
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 4 cut(s) 17, 219, 243, 305
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 1 cut(s) 260
LpnPI CCDG 8 cut(s) 18, 153, 174, 205, 209, 229, 272, 279
MaeI CTAG 2 cut(s) 164, 197
MaeII ACGT 1 cut(s) 328
MboII GAAGA 7 cut(s) 73, 76, 79, 120, 168, 188, 289
MluCI AATT 1 cut(s) 336
MnlI CCTC 1 cut(s) 60
MseI TTAA 1 cut(s) 343
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 3 cut(s) 76, 112, 148
PaqCI CACCTGC 1 cut(s) 234
Psp1406I AACGTT 1 cut(s) 328
PspFI CCCAGC 2 cut(s) 223, 286
PspN4I GGNNCC 3 cut(s) 76, 112, 148
PspPI GGNCC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 343
Sau96I GGNCC 1 cut(s) 110
SetI ASST 8 cut(s) 31, 52, 59, 169, 202, 248, 288, 331
SmlI CTYRAG 2 cut(s) 58, 151
SmoI CTYRAG 2 cut(s) 58, 151
Sse9I AATT 1 cut(s) 336
SspMI CTAG 2 cut(s) 164, 197
TaiI ACGT 1 cut(s) 331
TasI AATT 1 cut(s) 336
Tru1I TTAA 1 cut(s) 343
Tru9I TTAA 1 cut(s) 343
TspDTI ATGAA 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 326
XapI RAATTY 1 cut(s) 336
XspI CTAG 2 cut(s) 164, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.