Prupe.3G108500_v2.0.a1

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0023786
Physical Location & Seq
Reverse (-)
8721588 .. 8724906
3319 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G108500.2_v2.0.a1.CDS.1

Sequence Viewer

Length: 738 bp
ATGGAGGCTCAAACTGCAAGGCGCAGAATCAACACGATTGCTGCCCACTTTGCACCCATTGATGATGTATCTGCAACTCACGTACTCCCCATGAACTGCAGCAGTAGTTTAAACTCTGTGGCTAGGCGGGACAATAAAATGCATTTTGCTCGGCGAGCATCTGCTTCTCAAGCTAGGTTCATGAGGCAGGCTTCGATTAAAGAGGTTACTGCAAATGAAAGCTTTTACAATACTTCTGAAGCTCCATTGTTCTCTCAACCTTCGAGGATAGGACCAAACTTACCAACTACAGAAATGATCCAAAACCTGGCGCAAGGTAGCATATTAACTGCTCCCGAGCCTAAGTTTGCCAGACCAAGAACAGTAAGTGGAGAGAAACATCTATATGCCAAGAAGAAAGTACACTCTTCCGAACCAAATGGAATTGAGTGGTCCCCGAGAATGGATATTGCAGAATCAGAATGCAACTATGTTATAACAGTTGAAATTCCAGGTGTCAATATCAAAGATATTAGAGTGGAGATCGATGATCAAAAGTTGACTGTAAAAGGTAAACGCTCCACCTGGTTCTGGAAAGTGGCAGGTTGTTCAAATGATTCTGTTCCTACATACCATAAAAGAGAGATTTCACAAGGGCCTTATCAGGTTGCGTGGCCCCTTCCTCCTAATGTGAACAAGGACAGTGTCTCTGCTGATTTTTTGGATGGTTTCCTACAAATTATTGTTCCTAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HSP20

Protein Analysis

246

Amino Acids

27.39

Weight (kDa)

9.26

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023786)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06460
prunus_persica Prupe.3G108500_v2.0.a1 Prupe.3G108500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
Acc36I ACCTGC 1 cut(s) 572
AccB7I CCANNNNNTGG 1 cut(s) 307
AciI CCGC 1 cut(s) 127
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 2 cut(s) 84, 402
AfiI CCNNNNNNNGG 3 cut(s) 307, 442, 570
AgsI TTSAA 2 cut(s) 485, 591
AjnI CCWGG 3 cut(s) 306, 490, 563
AluBI AGCT 3 cut(s) 173, 222, 242
AluI AGCT 3 cut(s) 173, 222, 242
Alw26I GTCTC 1 cut(s) 691
AlwI GGATC 1 cut(s) 292
Ama87I CYCGRG 2 cut(s) 335, 436
AoxI GGCC 2 cut(s) 635, 653
ApeKI GCWGC 2 cut(s) 41, 99
ApoI RAATTY 1 cut(s) 486
AspLEI GCGC 2 cut(s) 24, 313
AspS9I GGNCC 4 cut(s) 272, 432, 635, 654
AvaI CYCGRG 2 cut(s) 335, 436
AvaII GGWCC 2 cut(s) 272, 432
BbvI GCAGC 2 cut(s) 28, 111
BccI CCATC 1 cut(s) 698
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 3 cut(s) 308, 492, 565
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 691
BfaI CTAG 2 cut(s) 123, 174
BfmI CTRYAG 2 cut(s) 97, 288
BfuAI ACCTGC 1 cut(s) 572
BisI GCNGC 2 cut(s) 42, 100
BlsI GCNGC 2 cut(s) 43, 101
Bme1390I CCNGG 3 cut(s) 308, 492, 565
Bme18I GGWCC 2 cut(s) 272, 432
BmeT110I CYCGRG 2 cut(s) 335, 436
BmgT120I GGNCC 4 cut(s) 272, 432, 635, 654
BmiI GGNNCC 2 cut(s) 434, 656
BmrFI CCNGG 3 cut(s) 308, 492, 565
BmsI GCATC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 153
Bsa29I ATCGAT 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 82
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 442, 570
BseBI CCWGG 3 cut(s) 308, 492, 565
BseCI ATCGAT 1 cut(s) 525
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 3 cut(s) 307, 442, 570
BseXI GCAGC 2 cut(s) 28, 111
BshFI GGCC 2 cut(s) 637, 655
BshVI ATCGAT 1 cut(s) 525
BsiHKCI CYCGRG 2 cut(s) 335, 436
BslFI GGGAC 2 cut(s) 143, 418
BslI CCNNNNNNNGG 3 cut(s) 307, 442, 570
BsmAI GTCTC 1 cut(s) 691
BsmFI GGGAC 2 cut(s) 143, 418
BsmI GAATGC 1 cut(s) 467
BsnI GGCC 2 cut(s) 637, 655
BsoBI CYCGRG 2 cut(s) 335, 436
Bsp143I GATC 3 cut(s) 297, 522, 529
BspACI CCGC 1 cut(s) 127
BspANI GGCC 2 cut(s) 637, 655
BspDI ATCGAT 1 cut(s) 525
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 434, 656
BspMAI CTGCAG 1 cut(s) 101
BspMI ACCTGC 1 cut(s) 572
BspPI GGATC 1 cut(s) 292
BssMI GATC 3 cut(s) 297, 522, 529
Bst2UI CCWGG 3 cut(s) 308, 492, 565
Bst4CI ACNGT 4 cut(s) 364, 481, 544, 683
Bst6I CTCTTC 1 cut(s) 412
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 156, 189
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 709
BstHHI GCGC 2 cut(s) 24, 313
BstKTI GATC 3 cut(s) 300, 525, 532
BstMAI GTCTC 1 cut(s) 691
BstMBI GATC 3 cut(s) 297, 522, 529
BstMWI GCNNNNNNNGC 4 cut(s) 14, 50, 155, 170
BstNI CCWGG 3 cut(s) 308, 492, 565
BstSCI CCNGG 3 cut(s) 306, 490, 563
BstSFI CTRYAG 2 cut(s) 97, 288
BstV1I GCAGC 2 cut(s) 28, 111
Bsu15I ATCGAT 1 cut(s) 525
BsuRI GGCC 2 cut(s) 637, 655
BsuTUI ATCGAT 1 cut(s) 525
BtsCI GGATG 1 cut(s) 709
BtsIMutI CAGTG 1 cut(s) 688
BveI ACCTGC 1 cut(s) 572
Cac8I GCNNGC 2 cut(s) 156, 189
CciI TCATGA 1 cut(s) 180
CfoI GCGC 2 cut(s) 24, 313
Cfr13I GGNCC 4 cut(s) 272, 432, 635, 654
ClaI ATCGAT 1 cut(s) 525
CsiI ACCWGGT 1 cut(s) 563
Csp6I GTAC 2 cut(s) 83, 401
CviAII CATG 2 cut(s) 91, 181
CviJI RGCY 9 cut(s) 8, 122, 173, 191, 222, 242, 340, 637, 655
CviKI_1 RGCY 9 cut(s) 8, 122, 173, 191, 222, 242, 340, 637, 655
CviQI GTAC 2 cut(s) 83, 401
DdeI CTNAG 1 cut(s) 342
DpnI GATC 3 cut(s) 299, 524, 531
DpnII GATC 3 cut(s) 297, 522, 529
DraI TTTAAA 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 412
Eco47I GGWCC 2 cut(s) 272, 432
Eco57I CTGAAG 1 cut(s) 258
Eco88I CYCGRG 2 cut(s) 335, 436
EcoO109I RGGNCCY 1 cut(s) 635
EcoRII CCWGG 3 cut(s) 306, 490, 563
EcoT22I ATGCAT 1 cut(s) 144
FaeI CATG 2 cut(s) 94, 184
FaiI YATR 9 cut(s) 92, 182, 323, 385, 387, 471, 476, 610, 615
FaqI GGGAC 2 cut(s) 143, 418
FatI CATG 2 cut(s) 90, 180
FauI CCCGC 1 cut(s) 120
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 2 cut(s) 42, 100
FokI GGATG 1 cut(s) 716
Fsp4HI GCNGC 2 cut(s) 42, 100
FspBI CTAG 2 cut(s) 123, 174
GlaI GCGC 2 cut(s) 23, 312
GluI GCNGC 2 cut(s) 42, 100
HaeIII GGCC 2 cut(s) 637, 655
HhaI GCGC 2 cut(s) 24, 313
Hin1II CATG 2 cut(s) 94, 184
Hin6I GCGC 2 cut(s) 22, 311
HinP1I GCGC 2 cut(s) 22, 311
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 3 cut(s) 27, 455, 596
Hpy166II GTNNAC 4 cut(s) 403, 540, 554, 673
Hpy188I TCNGA 3 cut(s) 238, 412, 460
Hpy188III TCNNGA 3 cut(s) 181, 335, 571
Hpy8I GTNNAC 4 cut(s) 403, 540, 554, 673
HpyAV CCTTC 2 cut(s) 270, 668
HpyCH4III ACNGT 4 cut(s) 364, 481, 544, 683
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 8 cut(s) 17, 53, 74, 99, 142, 212, 452, 465
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 50, 155, 170
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 94, 184
HspAI GCGC 2 cut(s) 22, 311
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 3 cut(s) 297, 522, 529
LmnI GCTCC 3 cut(s) 247, 337, 563
Lsp1109I GCAGC 2 cut(s) 28, 111
LweI GCATC 1 cut(s) 167
MabI ACCWGGT 1 cut(s) 563
MaeI CTAG 2 cut(s) 123, 174
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 205
MalI GATC 3 cut(s) 299, 524, 531
MboI GATC 3 cut(s) 297, 522, 529
MboII GAAGA 2 cut(s) 399, 406
MluCI AATT 3 cut(s) 423, 486, 717
MnlI CCTC 4 cut(s) 177, 196, 258, 672
Mph1103I ATGCAT 1 cut(s) 144
MseI TTAA 3 cut(s) 110, 198, 326
MslI CAYNNNNRTG 1 cut(s) 384
MspR9I CCNGG 3 cut(s) 308, 492, 565
MssI GTTTAAAC 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 467
MvaI CCWGG 3 cut(s) 308, 492, 565
MwoI GCNNNNNNNGC 4 cut(s) 14, 50, 155, 170
NdeII GATC 3 cut(s) 297, 522, 529
NlaIII CATG 2 cut(s) 94, 184
NlaIV GGNNCC 2 cut(s) 434, 656
NmeAIII GCCGAG 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 144
PagI TCATGA 1 cut(s) 180
PctI GAATGC 1 cut(s) 467
PfeI GAWTC 3 cut(s) 27, 455, 596
PflFI GACNNNGTC 1 cut(s) 683
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 2 cut(s) 43, 101
PmeI GTTTAAAC 1 cut(s) 111
Ppu21I YACGTR 1 cut(s) 82
PsiI TTATAA 1 cut(s) 476
Psp6I CCWGG 3 cut(s) 306, 490, 563
PspGI CCWGG 3 cut(s) 306, 490, 563
PspN4I GGNNCC 2 cut(s) 434, 656
PspPI GGNCC 4 cut(s) 272, 432, 635, 654
PstI CTGCAG 1 cut(s) 101
PsyI GACNNNGTC 1 cut(s) 683
RsaI GTAC 2 cut(s) 84, 402
RsaNI GTAC 2 cut(s) 83, 401
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 3 cut(s) 110, 198, 326
SatI GCNGC 2 cut(s) 42, 100
Sau3AI GATC 3 cut(s) 297, 522, 529
Sau96I GGNCC 4 cut(s) 272, 432, 635, 654
ScrFI CCNGG 3 cut(s) 308, 492, 565
SexAI ACCWGGT 1 cut(s) 563
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 2 cut(s) 97, 288
SinI GGWCC 2 cut(s) 272, 432
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 3 cut(s) 423, 486, 717
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 123, 174
StyD4I CCNGG 3 cut(s) 306, 490, 563
TaaI ACNGT 4 cut(s) 364, 481, 544, 683
TaiI ACGT 1 cut(s) 84
TaqI TCGA 3 cut(s) 194, 263, 525
TasI AATT 3 cut(s) 423, 486, 717
TatI WGTACW 1 cut(s) 400
TfiI GAWTC 3 cut(s) 27, 455, 596
Tru1I TTAA 3 cut(s) 110, 198, 326
Tru9I TTAA 3 cut(s) 110, 198, 326
TscAI CASTG 1 cut(s) 688
TseI GCWGC 2 cut(s) 41, 99
TspDTI ATGAA 3 cut(s) 107, 169, 231
TspRI CASTG 1 cut(s) 688
Tth111I GACNNNGTC 1 cut(s) 683
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 2 cut(s) 272, 432
XapI RAATTY 1 cut(s) 486
XspI CTAG 2 cut(s) 123, 174
Zsp2I ATGCAT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.