Prupe.3G133700_v2.0.a1

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017755
Physical Location & Seq
Forward (+)
13947585 .. 13951814
4230 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G133700.5

Sequence Viewer

Length: 489 bp
ATGATTTTAGAGCTACTATTTGATGGGTTTTGTTTATTGTGGCTAATATTTGATCGCCTTGACATATGCTTCTCCGCTCCTCAATTGGATAGATCAGTCGCCGGTGACTCTGTAACTGTTCGTGAAACAATTTATGTGTCTTCTTCTCAAATCAACAGCGCCACGTCTTTTGAAGTCTCTGGTAATCTCACTCTCAGTGGCTCGCTCACCCCTCGCTCAGTCTCTCTTCCTCCATTCTCCTTGGCATGTACAATCACAACAACCGTTTTGGACAGAGTTGGGGTTAGATTCTTCTTTTCATGCTGGTTCTACTCCGATGCTGTGGCTGGAGCTAGAGAGGCATTAATATGTGGTGTATCATCTCTGTACATGTCATTGAATTGGAAGAAAGATGTAAGCTATGAAAGTGATATGAAGGATGCAGTTGGTGTATCCTTGCCATTAATATATGCAGTTGTAAAAAGCATCCAGGAGGGAGTTTGCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

163

Amino Acids

17.71

Weight (kDa)

4.57

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 77
AciI CCGC 1 cut(s) 75
AfaI GTAC 2 cut(s) 250, 368
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 2 cut(s) 173, 379
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 3 cut(s) 13, 332, 399
AluI AGCT 3 cut(s) 13, 332, 399
Alw26I GTCTC 2 cut(s) 181, 226
AseI ATTAAT 2 cut(s) 344, 443
AspLEI GCGC 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 116, 199
BbsI GAAGAC 1 cut(s) 132
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 470
BciVI GTATCC 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 181, 226
BfaI CTAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 162
BfuI GTATCC 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 470
BmgBI CACGTC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 3 cut(s) 307, 409, 474
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 240
Bse118I RCCGGY 1 cut(s) 101
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 424, 465
BseMII CTCAG 2 cut(s) 208, 231
BseRI GAGGAG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 102
BsmAI GTCTC 2 cut(s) 181, 226
Bsp1407I TGTACA 2 cut(s) 248, 366
Bsp143I GATC 2 cut(s) 52, 92
BspACI CCGC 1 cut(s) 75
BspCNI CTCAG 2 cut(s) 207, 230
BsrBI CCGCTC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 101
BsrGI TGTACA 2 cut(s) 248, 366
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 52, 92
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 118, 265
Bst6I CTCTTC 1 cut(s) 231
BstAUI TGTACA 2 cut(s) 248, 366
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 194, 217
BstF5I GGATG 2 cut(s) 424, 465
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 2 cut(s) 55, 95
BstMAI GTCTC 2 cut(s) 181, 226
BstMBI GATC 2 cut(s) 52, 92
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNI CCWGG 1 cut(s) 470
BstNSI RCATGY 2 cut(s) 249, 373
BstSCI CCNGG 1 cut(s) 468
BstV2I GAAGAC 1 cut(s) 132
BsuI GTATCC 1 cut(s) 442
BtrI CACGTC 1 cut(s) 165
BtsCI GGATG 2 cut(s) 424, 465
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 203
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 101
Csp6I GTAC 2 cut(s) 249, 367
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 3 cut(s) 246, 300, 370
CviJI RGCY 6 cut(s) 13, 43, 201, 326, 332, 399
CviKI_1 RGCY 6 cut(s) 13, 43, 201, 326, 332, 399
CviQI GTAC 2 cut(s) 249, 367
DdeI CTNAG 2 cut(s) 194, 217
DpnI GATC 2 cut(s) 54, 94
DpnII GATC 2 cut(s) 52, 92
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 3 cut(s) 249, 303, 373
FatI CATG 3 cut(s) 245, 299, 369
FauNDI CATATG 1 cut(s) 65
FokI GGATG 2 cut(s) 431, 452
FspBI CTAG 1 cut(s) 333
GlaI GCGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 162
HapII CCGG 1 cut(s) 102
HhaI GCGC 1 cut(s) 161
Hin1II CATG 3 cut(s) 249, 303, 373
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 2 cut(s) 107, 288
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 116, 199
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 2 cut(s) 118, 265
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 422, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 2 cut(s) 194, 217
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 3 cut(s) 249, 303, 373
HspAI GCGC 1 cut(s) 159
Kzo9I GATC 2 cut(s) 52, 92
LmnI GCTCC 2 cut(s) 82, 329
LpnPI CCDG 6 cut(s) 115, 165, 289, 312, 455, 482
LweI GCATC 3 cut(s) 307, 409, 474
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 104, 112
MalI GATC 2 cut(s) 54, 94
MbiI CCGCTC 1 cut(s) 77
MboI GATC 2 cut(s) 52, 92
MboII GAAGA 5 cut(s) 132, 135, 218, 283, 397
MfeI CAATTG 1 cut(s) 83
MluCI AATT 3 cut(s) 83, 129, 379
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 5 cut(s) 90, 222, 240, 331, 466
MseI TTAA 2 cut(s) 344, 443
MslI CAYNNNNRTG 1 cut(s) 346
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 470
MunI CAATTG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 338
NdeI CATATG 1 cut(s) 65
NdeII GATC 2 cut(s) 52, 92
NlaIII CATG 3 cut(s) 249, 303, 373
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 2 cut(s) 249, 373
PciI ACATGT 1 cut(s) 369
PfeI GAWTC 1 cut(s) 288
PfoI TCCNGGA 1 cut(s) 468
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PscI ACATGT 1 cut(s) 369
PshBI ATTAAT 2 cut(s) 344, 443
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
RsaI GTAC 2 cut(s) 250, 368
RsaNI GTAC 2 cut(s) 249, 367
RseI CAYNNNNRTG 1 cut(s) 346
SaqAI TTAA 2 cut(s) 344, 443
Sau3AI GATC 2 cut(s) 52, 92
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 470
SetI ASST 4 cut(s) 15, 167, 334, 401
SfaNI GCATC 3 cut(s) 307, 409, 474
SgrAI CRCCGGYG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 346
Sse9I AATT 3 cut(s) 83, 129, 379
SsiI CCGC 1 cut(s) 75
SspI AATATT 1 cut(s) 48
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 118, 265
TaiI ACGT 1 cut(s) 167
TasI AATT 3 cut(s) 83, 129, 379
TatI WGTACW 2 cut(s) 248, 366
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 2 cut(s) 344, 443
Tru9I TTAA 2 cut(s) 344, 443
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 288, 417, 428
TspRI CASTG 1 cut(s) 202
VspI ATTAAT 2 cut(s) 344, 443
XceI RCATGY 2 cut(s) 249, 373
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.