Prupe.3G138300_v2.0.a1

endonuclease activity

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
14594225 .. 14595681
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G138300.1

Sequence Viewer

Length: 324 bp
ATGTTAATTTGCTTCTTTTTAGGCGCTTTTTCCCCTCGCAAGGCGACAATCATTTGTATTCTTCTACTGTGTCTGTATGCGCTGCGCGTCTGGCTGGCGAATCATGTATATGCAAAAGCGGGTAGGTGGGATGTTGCTTTTGGTCTTTTAAACAACCCCCCAAGAACTTCTATCCGTGTAGTTAATAATCTGCAGATTTGTAGAGATTGCCATTCAGCCATGAAACTAATATCTCAGGCCTACAATAGAGAAATTGTTATCAGGGATAATTACAGATTCCATCGGTTTGTAGATGGAAATTGCTCTTGCAAAGATTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.49

Weight (kDa)

9.42

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028416)

Species Orthologous Gene IDs
malus_domestica MD15G1113800.v1.1
prunus_persica Prupe.3G138300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AciI CCGC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 40
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 82
AspLEI GCGC 3 cut(s) 26, 82, 87
BbvI GCAGC 1 cut(s) 69
BccI CCATC 2 cut(s) 287, 288
BfmI CTRYAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 27
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 40
BsnI GGCC 1 cut(s) 239
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 136
BstFNI CGCG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 3 cut(s) 26, 82, 87
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 191
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 3 cut(s) 26, 82, 87
CseI GACGC 1 cut(s) 76
CviAII CATG 2 cut(s) 104, 220
CviJI RGCY 3 cut(s) 94, 218, 239
CviKI_1 RGCY 3 cut(s) 94, 218, 239
DdeI CTNAG 1 cut(s) 234
DraI TTTAAA 1 cut(s) 150
Eco147I AGGCCT 1 cut(s) 239
FaeI CATG 2 cut(s) 107, 223
FaiI YATR 5 cut(s) 78, 105, 109, 111, 221
FatI CATG 2 cut(s) 103, 219
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 83
GlaI GCGC 3 cut(s) 25, 81, 86
GluI GCNGC 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 1 cut(s) 239
HgaI GACGC 1 cut(s) 76
HhaI GCGC 3 cut(s) 26, 82, 87
Hin1II CATG 2 cut(s) 107, 223
Hin6I GCGC 3 cut(s) 24, 80, 85
HinP1I GCGC 3 cut(s) 24, 80, 85
HinfI GANTC 2 cut(s) 100, 276
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 113, 193, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 2 cut(s) 107, 223
HspAI GCGC 3 cut(s) 24, 80, 85
LpnPI CCDG 4 cut(s) 76, 80, 221, 247
Lsp1109I GCAGC 1 cut(s) 69
MboII GAAGA 1 cut(s) 53
MluCI AATT 4 cut(s) 6, 252, 268, 298
MnlI CCTC 1 cut(s) 45
MseI TTAA 3 cut(s) 5, 149, 183
MslI CAYNNNNRTG 1 cut(s) 108
MteI GCGCNGCGC 1 cut(s) 83
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 91
NlaIII CATG 2 cut(s) 107, 223
PceI AGGCCT 1 cut(s) 239
PfeI GAWTC 2 cut(s) 100, 276
PkrI GCNGC 1 cut(s) 84
PstI CTGCAG 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 3 cut(s) 5, 149, 183
SatI GCNGC 1 cut(s) 83
SetI ASST 1 cut(s) 128
SfcI CTRYAG 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 4 cut(s) 6, 252, 268, 298
SseBI AGGCCT 1 cut(s) 239
SsiI CCGC 1 cut(s) 119
StuI AGGCCT 1 cut(s) 239
TaaI ACNGT 1 cut(s) 69
TasI AATT 4 cut(s) 6, 252, 268, 298
TfiI GAWTC 2 cut(s) 100, 276
Tru1I TTAA 3 cut(s) 5, 149, 183
Tru9I TTAA 3 cut(s) 5, 149, 183
TseI GCWGC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 236
TspGWI ACGGA 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.