Prupe.3G143800_v2.0.a1

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0023596
Physical Location & Seq
Reverse (-)
15606312 .. 15610281
3970 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G143800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 663 bp
ATGGCTGATATTATTGATTATGATACAAAGCAAAATACAATTTCCACAACAACTTCCGCTTCCACACCTCTTAAGCTCTTTGGTTTCAACATATCAGAAGATCACTACAACTCAAATATAACCAAATCTTCATCTGCGTCACAAGAATCCGACCTCCGTAAATATGAGTGTCTGTACTGCTGCCGTGAGTTTAGCAATTCTCAGGCCTTGGGAGGCCACCAGAATGCTCACAAGAAAGAAAGGCAAATCCTAAAGCGTGCACAAATGCATGCTAGCAGCCGAAACTTGGTTACTTCACACATCCAAAACCCGATCATATCGGCATTCATTTCACAGTCACAGCTCTTCGCTTCTATGATGGTTCAGGCAGCGGCGCCCCCACAATCCCCTTCATGTCTTTACATGGCACATGCACCTGTAAACATATCGGACCGCGACGCATATCTCTCCGGGACTGGCCCCTCGCCATTAGGGAGGCATGTCTACCGCAAGGCCGGGATAGGGGAAAGTTTGATGATGAGGGCTTCGTCTCAAGAAGGGGTTGGAAATCATGCTAGTTTTTTGCAGGGTTTAAGCGGTTGTGCGGAAGATGAGGGTGGGATTAAGCTTGATAAAGGTTTGGGATTGAATTTGCATCTCAGCCTTGGGCCTGCTTCGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

221

Amino Acids

23.75

Weight (kDa)

7.71

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67030
prunus_persica Prupe.3G143800_v2.0.a1 Prupe.3G143800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 373
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 435
AciI CCGC 6 cut(s) 57, 371, 433, 487, 576, 584
AcsI RAATTY 1 cut(s) 628
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 286, 501
AflII CTTAAG 1 cut(s) 71
AgsI TTSAA 2 cut(s) 88, 628
AluBI AGCT 3 cut(s) 76, 343, 607
AluI AGCT 3 cut(s) 76, 343, 607
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 534
Alw44I GTGCAC 1 cut(s) 258
AoxI GGCC 5 cut(s) 204, 214, 457, 492, 647
ApaLI GTGCAC 1 cut(s) 258
ApeKI GCWGC 3 cut(s) 180, 276, 368
ApoI RAATTY 1 cut(s) 628
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 3 cut(s) 430, 458, 647
AsuC2I CCSGG 2 cut(s) 451, 496
AsuNHI GCTAGC 1 cut(s) 272
AvaII GGWCC 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 3 cut(s) 167, 288, 380
BccI CCATC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 168
BcnI CCSGG 2 cut(s) 451, 496
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 2 cut(s) 273, 555
BfoI RGCGCY 1 cut(s) 377
BfrI CTTAAG 1 cut(s) 71
BisI GCNGC 4 cut(s) 181, 277, 369, 372
BlsI GCNGC 4 cut(s) 182, 278, 370, 373
Bme1390I CCNGG 2 cut(s) 451, 496
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 3 cut(s) 430, 458, 647
BmiI GGNNCC 2 cut(s) 375, 460
BmrFI CCNGG 2 cut(s) 451, 496
BmsI GCATC 1 cut(s) 643
BmtI GCTAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 516
BpuMI CCSGG 2 cut(s) 451, 496
BsaHI GRCGYC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 207, 643
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 501
Bse1I ACTGG 1 cut(s) 460
BseDI CCNNGG 2 cut(s) 207, 643
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 286, 501
BseMII CTCAG 2 cut(s) 215, 652
BseNI ACTGG 1 cut(s) 460
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 3 cut(s) 167, 288, 380
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 5 cut(s) 206, 216, 459, 494, 649
BshNI GGYRCC 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 2 cut(s) 450, 495
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 2 cut(s) 286, 501
BsmAI GTCTC 1 cut(s) 534
BsmBI CGTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 2 cut(s) 229, 323
BsnI GGCC 5 cut(s) 206, 216, 459, 494, 649
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 2 cut(s) 100, 312
BspACI CCGC 6 cut(s) 57, 371, 433, 487, 576, 584
BspANI GGCC 5 cut(s) 206, 216, 459, 494, 649
BspCNI CTCAG 2 cut(s) 214, 651
BspFNI CGCG 1 cut(s) 435
BspLI GGNNCC 2 cut(s) 375, 460
BspOI GCTAGC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 373
BspTI CTTAAG 1 cut(s) 71
BsrI ACTGG 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 207, 643
BssMI GATC 2 cut(s) 100, 312
BssNI GRCGYC 1 cut(s) 374
BssT1I CCWWGG 2 cut(s) 207, 643
Bst4CI ACNGT 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 350
BstACI GRCGYC 1 cut(s) 374
BstAFI CTTAAG 1 cut(s) 71
BstC8I GCNNGC 4 cut(s) 258, 270, 274, 651
BstDEI CTNAG 2 cut(s) 201, 638
BstF5I GGATG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 435
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 2 cut(s) 103, 315
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 2 cut(s) 100, 312
BstMWI GCNNNNNNNGC 1 cut(s) 655
BstNSI RCATGY 3 cut(s) 272, 413, 482
BstSCI CCNGG 2 cut(s) 449, 494
BstSLI GKGCMC 1 cut(s) 262
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 167, 288, 380
BsuRI GGCC 5 cut(s) 206, 216, 459, 494, 649
BtsCI GGATG 1 cut(s) 300
Cac8I GCNNGC 4 cut(s) 258, 270, 274, 651
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 3 cut(s) 430, 458, 647
CpoI CGGWCCG 1 cut(s) 430
CseI GACGC 2 cut(s) 126, 446
Csp6I GTAC 1 cut(s) 175
CspI CGGWCCG 1 cut(s) 430
CviAII CATG 6 cut(s) 269, 393, 403, 410, 479, 551
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 201, 638
DinI GGCGCC 1 cut(s) 375
DpnI GATC 2 cut(s) 102, 314
DpnII GATC 2 cut(s) 100, 312
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 2 cut(s) 207, 643
Eco147I AGGCCT 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 207, 643
EcoT22I ATGCAT 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 375
EheI GGCGCC 1 cut(s) 375
ErhI CCWWGG 2 cut(s) 207, 643
Esp3I CGTCTC 1 cut(s) 534
FaeI CATG 6 cut(s) 272, 396, 406, 413, 482, 554
FaqI GGGAC 1 cut(s) 466
FatI CATG 6 cut(s) 268, 392, 402, 409, 478, 550
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 4 cut(s) 181, 277, 369, 372
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 4 cut(s) 181, 277, 369, 372
FspBI CTAG 2 cut(s) 273, 555
GlaI GCGC 1 cut(s) 375
GluI GCNGC 4 cut(s) 181, 277, 369, 372
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 5 cut(s) 206, 216, 459, 494, 649
HapII CCGG 2 cut(s) 450, 495
HgaI GACGC 2 cut(s) 126, 446
HhaI GCGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 6 cut(s) 272, 396, 406, 413, 482, 554
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 1 cut(s) 146
HpaII CCGG 2 cut(s) 450, 495
Hpy166II GTNNAC 3 cut(s) 260, 421, 484
Hpy188I TCNGA 3 cut(s) 97, 151, 430
Hpy188III TCNNGA 1 cut(s) 533
Hpy8I GTNNAC 3 cut(s) 260, 421, 484
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 2 cut(s) 399, 530
HpyCH4III ACNGT 1 cut(s) 336
HpyCH4V TGCA 5 cut(s) 260, 268, 413, 565, 634
HpyF10VI GCNNNNNNNGC 1 cut(s) 655
HpyF3I CTNAG 2 cut(s) 201, 638
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 6 cut(s) 272, 396, 406, 413, 482, 554
HspAI GCGC 1 cut(s) 374
KasI GGCGCC 1 cut(s) 373
Kzo9I GATC 2 cut(s) 100, 312
LguI GCTCTTC 1 cut(s) 350
LpnPI CCDG 8 cut(s) 188, 233, 350, 429, 441, 463, 508, 551
Lsp1109I GCAGC 3 cut(s) 167, 288, 380
LweI GCATC 1 cut(s) 643
MaeI CTAG 2 cut(s) 273, 555
MaeIII GTNAC 3 cut(s) 138, 289, 336
MalI GATC 2 cut(s) 102, 314
MboI GATC 2 cut(s) 100, 312
MboII GAAGA 4 cut(s) 110, 120, 337, 599
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 3 cut(s) 39, 196, 628
Mly113I GGCGCC 1 cut(s) 374
MmeI TCCRAC 2 cut(s) 174, 523
MnlI CCTC 7 cut(s) 78, 164, 206, 468, 472, 513, 586
Mph1103I ATGCAT 1 cut(s) 270
MseI TTAA 3 cut(s) 72, 572, 603
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 371
MspCI CTTAAG 1 cut(s) 71
MspI CCGG 2 cut(s) 450, 495
MspR9I CCNGG 2 cut(s) 451, 496
Mva1269I GAATGC 2 cut(s) 229, 323
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 655
NarI GGCGCC 1 cut(s) 374
NciI CCSGG 2 cut(s) 451, 496
NdeII GATC 2 cut(s) 100, 312
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 6 cut(s) 272, 396, 406, 413, 482, 554
NlaIV GGNNCC 2 cut(s) 375, 460
NmuCI GTSAC 2 cut(s) 138, 336
NsiI ATGCAT 1 cut(s) 270
NspI RCATGY 3 cut(s) 272, 413, 482
PaeI GCATGC 1 cut(s) 272
PceI AGGCCT 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 350
PctI GAATGC 2 cut(s) 229, 323
PfeI GAWTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 449
PkrI GCNGC 4 cut(s) 182, 278, 370, 373
PluTI GGCGCC 1 cut(s) 377
PspN4I GGNNCC 2 cut(s) 375, 460
PspPI GGNCC 3 cut(s) 430, 458, 647
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 222
Rsr2I CGGWCCG 1 cut(s) 430
RsrII CGGWCCG 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 3 cut(s) 72, 572, 603
SatI GCNGC 4 cut(s) 181, 277, 369, 372
Sau3AI GATC 2 cut(s) 100, 312
Sau96I GGNCC 3 cut(s) 430, 458, 647
ScrFI CCNGG 2 cut(s) 451, 496
SduI GDGCHC 1 cut(s) 262
SetI ASST 7 cut(s) 70, 78, 156, 345, 418, 609, 619
SfaNI GCATC 1 cut(s) 643
SfoI GGCGCC 1 cut(s) 375
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 2 cut(s) 71, 531
SmoI CTYRAG 2 cut(s) 71, 531
SphI GCATGC 1 cut(s) 272
Sse9I AATT 3 cut(s) 39, 196, 628
SseBI AGGCCT 1 cut(s) 206
SsiI CCGC 6 cut(s) 57, 371, 433, 487, 576, 584
SspDI GGCGCC 1 cut(s) 373
SspMI CTAG 2 cut(s) 273, 555
StuI AGGCCT 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 449, 494
StyI CCWWGG 2 cut(s) 207, 643
TaaI ACNGT 1 cut(s) 336
TasI AATT 3 cut(s) 39, 196, 628
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 3 cut(s) 72, 572, 603
Tru9I TTAA 3 cut(s) 72, 572, 603
TseFI GTSAC 2 cut(s) 138, 336
TseI GCWGC 3 cut(s) 180, 276, 368
Tsp45I GTSAC 2 cut(s) 138, 336
TspDTI ATGAA 3 cut(s) 120, 316, 381
TspGWI ACGGA 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 71
VneI GTGCAC 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 1 cut(s) 628
XceI RCATGY 3 cut(s) 272, 413, 482
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 2 cut(s) 273, 555
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.