Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0026721

Physical Location & Seq

Genomic Coordinates Reverse (-)

16235943 .. 16237780

Gene Structure 1838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G148700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGAGACTTCAGCATCGCCTCCGCCACCAACCACCTCACCCACCAAACCAAAGCTTCGCATTATGTGCAGCTATGGCGGCCACATAGTCCCCAATCCACGCTCCAAGTCCCTCTGCTACATTGGCGGCGACACTCGCATACTCTCAATCGACCCAACCACCGTCTCAACTCTCTCTTCTCTCACATCCCACCTCGCAGCCACTCTCTCTCTCCCCGCACCTCTGTTTCTCAAATACCAACTTCCCCGCCACGACCTCCTCTCCTTAGTCTCTCTCTCCACCGACGACGACCTTCTCATCTTCCTCAACGAGCTTCGCCGCCTCTCCAATTCCGCCTCTCGGATCAGATTGTTTGTGTTTTTCGACAAGACCCATCATCAGTGTAAGGCCATTCAGCACCCAAAGACTGAGTCTTGGTTCATTGATGCGCTGGAGAGTGCTAAGATTGTGATGCAGAAGGGGATGAGGAGTAATGGGTTGGTGGGTTTTGAGGCCGAGAGTCAGAGTCAGAGTGAGTGTTTGAGTGGTGGTGGTAGTAGGAAATTTTTGAGCTGTGGGGTTGGTGGTGGTGGGTCTGTGGCTGCAGAGTCCATTGTGTTGGAGACTGGGTCGTCTTTTGGGTCTACTTCATCTTCAGCTTCTTTGTCTAGTTTGCCCTCTGTTAGAGCTCGAGTTGAGGATGTTATGGCTGGTACATTGCTGGAAAATAGGACTGACGCAGTGATTAATGTTGCTTCAATGGAGAACAGGGTTTCTTATAACTATGCTGAATCAGATATTAAACTTAGTGATCCTAATTTTTCTGGGATCCAGGTCCAGAAAACAGTTCAGGCGTCTGGATATTATCCAGTGACTTCACAACTGGATCAGCTTCAGCAACCGAAGCTACAATTCGTTCAAGTAGGTACCCATTACATACCCCAGAATCCTGTTGGGATGTTGCCAGTTTCATCATACTACCCAATGTACCATCCGCAGCTGCATCAGCAGCAGCTGCAACACTTACACTATCAGCCCAATCAGCCGTACCCGATATACATCTTGCCTGCTGCACCAGCACAACCTTACAATTTGCCAATGCACGGTAGCTCATACCCTATAGCTCATGGTCATCCCCCGTTGTATCCAAATGCTTCCTGTATCCCTCCCCAAGCAACTCAGAACGAACCTATTAAAGCTGGTGTTTCATCTGATTTTGCTTCACGAGTGTACAGACCAGTCCATTCAGAAATGCCACATCATGGAGGAGTGCCACTTATCAATGTTCCATATGATGGAAATCAGCAACAACCATCAGGTGTTTCTGAAATGCAGCATGAAACTGTTGCTATTGCTTCCAGGGAATCTCCTAAATACAGTAATCAGCCTGATAATGACCCTGCACGTGACCTGATATACAAATCTCAGCCTTCAGCACCGTCATTGGCTTACCAAAGCATGACCAAAGATACAATACATTTATCGGAAGCCTTGACTCAGTTTCATATAGACAACCGTAAACAACAGACTGGGAACTTGGACTCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

510

Amino Acids

55.66

Weight (kDa)

6.7

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16220
prunus_persica	Prupe.3G148700_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	759
AasI	GACNNNNNNGTC	1 cut(s)	610
Acc65I	GGTACC	1 cut(s)	905
AccB1I	GGYRCC	1 cut(s)	905
AccB7I	CCANNNNNTGG	2 cut(s)	1241, 1274
AccI	GTMKAC	1 cut(s)	623
AciI	CCGC	8 cut(s)	23, 78, 126, 216, 247, 319, 333, 974
AclWI	GGATC	5 cut(s)	350, 785, 802, 815, 873
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	3 cut(s)	618, 857, 1395
AcvI	CACGTG	1 cut(s)	1385
AcyI	GRCGYC	1 cut(s)	833
AfaI	GTAC	5 cut(s)	694, 907, 968, 1028, 1211
AfiI	CCNNNNNNNGG	4 cut(s)	339, 1082, 1241, 1274
AgsI	TTSAA	2 cut(s)	738, 899
AjnI	CCWGG	2 cut(s)	810, 1337
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	3 cut(s)	169, 274, 596
AlwI	GGATC	5 cut(s)	350, 785, 802, 815, 873
AlwNI	CAGNNNCTG	1 cut(s)	994
Ama87I	CYCGRG	1 cut(s)	669
AoxI	GGCC	3 cut(s)	79, 387, 492
ApoI	RAATTY	1 cut(s)	542
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AseI	ATTAAT	1 cut(s)	726
Asp718I	GGTACC	1 cut(s)	905
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	814
AsuHPI	GGTGA	1 cut(s)	30
AvaI	CYCGRG	1 cut(s)	669
AvaII	GGWCC	1 cut(s)	814
BamHI	GGATCC	1 cut(s)	807
BanI	GGYRCC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	670
BauI	CACGAG	1 cut(s)	1203
BbrPI	CACGTG	1 cut(s)	1385
Bbv12I	GWGCWC	1 cut(s)	670
BccI	CCATC	4 cut(s)	381, 978, 1268, 1300
BceAI	ACGGC	1 cut(s)	1009
BciT130I	CCWGG	2 cut(s)	812, 1339
BciVI	GTATCC	2 cut(s)	1134, 1151
BcoDI	GTCTC	3 cut(s)	169, 274, 596
BfaI	CTAG	1 cut(s)	648
BfmI	CTRYAG	2 cut(s)	582, 1098
BfuI	GTATCC	2 cut(s)	1134, 1151
Bme1390I	CCNGG	2 cut(s)	812, 1339
Bme18I	GGWCC	1 cut(s)	814
BmeT110I	CYCGRG	1 cut(s)	669
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	2 cut(s)	809, 907
BmrFI	CCNGG	2 cut(s)	812, 1339
BmrI	ACTGGG	2 cut(s)	615, 1518
BmsI	GCATC	4 cut(s)	23, 415, 441, 991
BmuI	ACTGGG	2 cut(s)	615, 1518
BpmI	CTGGAG	1 cut(s)	452
BsaAI	YACGTR	1 cut(s)	1385
BsaBI	GATNNNNATC	2 cut(s)	1037, 1278
BsaHI	GRCGYC	1 cut(s)	833
BsaJI	CCNNGG	1 cut(s)	1338
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 593, 623
Bsc4I	CCNNNNNNNGG	4 cut(s)	339, 1082, 1241, 1274
Bse1I	ACTGG	6 cut(s)	610, 848, 867, 944, 1217, 1513
Bse3DI	GCAATG	1 cut(s)	695
Bse8I	GATNNNNATC	2 cut(s)	1037, 1278
BseBI	CCWGG	2 cut(s)	812, 1339
BseDI	CCNNGG	1 cut(s)	1338
BseGI	GGATG	6 cut(s)	185, 468, 685, 942, 970, 1111
BseJI	GATNNNNATC	2 cut(s)	1037, 1278
BseLI	CCNNNNNNNGG	4 cut(s)	339, 1082, 1241, 1274
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	4 cut(s)	399, 1172, 1418, 1490
BseNI	ACTGG	6 cut(s)	610, 848, 867, 944, 1217, 1513
BseRI	GAGGAG	3 cut(s)	248, 481, 1260
BsgI	GTGCAG	3 cut(s)	88, 1035, 1365
BshFI	GGCC	3 cut(s)	81, 389, 494
BshNI	GGYRCC	1 cut(s)	905
BsiHKAI	GWGCWC	1 cut(s)	670
BsiHKCI	CYCGRG	1 cut(s)	669
BslFI	GGGAC	2 cut(s)	74, 94
BslI	CCNNNNNNNGG	4 cut(s)	339, 1082, 1241, 1274
BsmAI	GTCTC	3 cut(s)	169, 274, 596
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	74, 94
BsnI	GGCC	3 cut(s)	81, 389, 494
BsoBI	CYCGRG	1 cut(s)	669
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp1407I	TGTACA	1 cut(s)	1209
Bsp143I	GATC	4 cut(s)	342, 790, 807, 865
BspACI	CCGC	8 cut(s)	23, 78, 126, 216, 247, 319, 333, 974
BspANI	GGCC	3 cut(s)	81, 389, 494
BspCNI	CTCAG	4 cut(s)	400, 1171, 1417, 1489
BspLI	GGNNCC	2 cut(s)	809, 907
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	5 cut(s)	350, 785, 802, 815, 873
BspT107I	GGYRCC	1 cut(s)	905
BsrDI	GCAATG	1 cut(s)	695
BsrGI	TGTACA	1 cut(s)	1209
BsrI	ACTGG	6 cut(s)	610, 848, 867, 944, 1217, 1513
BssECI	CCNNGG	1 cut(s)	1338
BssMI	GATC	4 cut(s)	342, 790, 807, 865
BssNI	GRCGYC	1 cut(s)	833
BssSI	CACGAG	1 cut(s)	1203
Bst2BI	CACGAG	1 cut(s)	1203
Bst2UI	CCWGG	2 cut(s)	812, 1339
Bst4CI	ACNGT	7 cut(s)	163, 826, 1085, 1324, 1358, 1419, 1496
Bst6I	CTCTTC	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	833
BstAPI	GCANNNNNTGC	2 cut(s)	66, 994
BstAUI	TGTACA	1 cut(s)	1209
BstBAI	YACGTR	1 cut(s)	1385
BstC8I	GCNNGC	1 cut(s)	1047
BstDEI	CTNAG	7 cut(s)	265, 408, 441, 785, 1158, 1404, 1476
BstF5I	GGATG	6 cut(s)	185, 468, 685, 942, 970, 1111
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	4 cut(s)	345, 793, 810, 868
BstMAI	GTCTC	3 cut(s)	169, 274, 596
BstMBI	GATC	4 cut(s)	342, 790, 807, 865
BstNI	CCWGG	2 cut(s)	812, 1339
BstSCI	CCNGG	2 cut(s)	810, 1337
BstSFI	CTRYAG	2 cut(s)	582, 1098
BstX2I	RGATCY	1 cut(s)	807
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	807
BsuI	GTATCC	2 cut(s)	1134, 1151
BsuRI	GGCC	3 cut(s)	81, 389, 494
BtsCI	GGATG	6 cut(s)	185, 468, 685, 942, 970, 1111
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	3 cut(s)	386, 726, 855
Cac8I	GCNNGC	1 cut(s)	1047
CaiI	CAGNNNCTG	1 cut(s)	994
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	814
CseI	GACGC	2 cut(s)	725, 822
Csp6I	GTAC	5 cut(s)	693, 906, 967, 1027, 1210
CviAII	CATG	4 cut(s)	1106, 1241, 1316, 1438
CviQI	GTAC	5 cut(s)	693, 906, 967, 1027, 1210
DdeI	CTNAG	7 cut(s)	265, 408, 441, 785, 1158, 1404, 1476
DpnI	GATC	4 cut(s)	344, 792, 809, 867
DpnII	GATC	4 cut(s)	342, 790, 807, 865
DrdI	GACNNNNNNGTC	1 cut(s)	610
DseDI	GACNNNNNNGTC	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
EciI	GGCGGA	2 cut(s)	12, 322
Ecl136II	GAGCTC	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	814
Eco53kI	GAGCTC	1 cut(s)	668
Eco57I	CTGAAG	3 cut(s)	618, 857, 1395
Eco72I	CACGTG	1 cut(s)	1385
Eco88I	CYCGRG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	810, 1337
EcoT38I	GRGCYC	1 cut(s)	670
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	4 cut(s)	1109, 1244, 1319, 1441
FaqI	GGGAC	2 cut(s)	74, 94
FatI	CATG	4 cut(s)	1105, 1240, 1315, 1437
FauI	CCCGC	2 cut(s)	223, 254
FauNDI	CATATG	1 cut(s)	1270
FblI	GTMKAC	1 cut(s)	623
FokI	GGATG	6 cut(s)	172, 475, 692, 949, 957, 1098
FriOI	GRGCYC	1 cut(s)	670
FspBI	CTAG	1 cut(s)	648
GlaI	GCGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	3 cut(s)	81, 389, 494
HgaI	GACGC	2 cut(s)	725, 822
HhaI	GCGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	833
Hin1II	CATG	4 cut(s)	1109, 1244, 1319, 1441
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	9 cut(s)	410, 499, 505, 587, 770, 925, 1343, 1474, 1520
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	624, 1210, 1499
Hpy188III	TCNNGA	3 cut(s)	817, 837, 1203
Hpy8I	GTNNAC	3 cut(s)	624, 1210, 1499
Hpy99I	CGWCG	2 cut(s)	287, 290
HpyAV	CCTTC	3 cut(s)	302, 451, 1419
HpyCH4III	ACNGT	7 cut(s)	163, 826, 1085, 1324, 1358, 1419, 1496
HpyCH4IV	ACGT	1 cut(s)	1384
HpyCH4V	TGCA	9 cut(s)	69, 454, 584, 982, 997, 1052, 1081, 1312, 1382
HpyF3I	CTNAG	7 cut(s)	265, 408, 441, 785, 1158, 1404, 1476
HpySE526I	ACGT	1 cut(s)	1384
Hsp92I	GRCGYC	1 cut(s)	833
Hsp92II	CATG	4 cut(s)	1109, 1244, 1319, 1441
HspAI	GCGC	1 cut(s)	428
KpnI	GGTACC	1 cut(s)	909
Kzo9I	GATC	4 cut(s)	342, 790, 807, 865
LmnI	GCTCC	1 cut(s)	107
LweI	GCATC	4 cut(s)	23, 415, 441, 991
MaeI	CTAG	1 cut(s)	648
MaeII	ACGT	1 cut(s)	1384
MaeIII	GTNAC	2 cut(s)	850, 1385
MalI	GATC	4 cut(s)	344, 792, 809, 867
MboI	GATC	4 cut(s)	342, 790, 807, 865
MboII	GAAGA	3 cut(s)	168, 292, 624
MflI	RGATCY	1 cut(s)	807
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	5 cut(s)	328, 542, 796, 890, 1069
MlyI	GAGTC	6 cut(s)	419, 508, 514, 596, 1468, 1514
MmeI	TCCRAC	1 cut(s)	579
MseI	TTAA	3 cut(s)	726, 780, 1173
MspA1I	CMGCKG	2 cut(s)	979, 994
MspR9I	CCNGG	2 cut(s)	812, 1339
MvaI	CCWGG	2 cut(s)	812, 1339
NdeI	CATATG	1 cut(s)	1270
NdeII	GATC	4 cut(s)	342, 790, 807, 865
NlaIII	CATG	4 cut(s)	1109, 1244, 1319, 1441
NlaIV	GGNNCC	2 cut(s)	809, 907
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	850, 1385
PaeR7I	CTCGAG	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	770, 925, 1343
PflFI	GACNNNGTC	2 cut(s)	409, 607
PflMI	CCANNNNNTGG	2 cut(s)	1241, 1274
PleI	GAGTC	6 cut(s)	418, 507, 513, 595, 1468, 1514
PmaCI	CACGTG	1 cut(s)	1385
PmlI	CACGTG	1 cut(s)	1385
PpsI	GAGTC	6 cut(s)	418, 507, 513, 595, 1468, 1514
Ppu21I	YACGTR	1 cut(s)	1385
PshBI	ATTAAT	1 cut(s)	726
PsiI	TTATAA	1 cut(s)	759
Psp124BI	GAGCTC	1 cut(s)	670
Psp6I	CCWGG	2 cut(s)	810, 1337
PspCI	CACGTG	1 cut(s)	1385
PspGI	CCWGG	2 cut(s)	810, 1337
PspN4I	GGNNCC	2 cut(s)	809, 907
PspPI	GGNCC	1 cut(s)	814
PspXI	VCTCGAGB	1 cut(s)	669
PstI	CTGCAG	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	994
PsuI	RGATCY	1 cut(s)	807
PsyI	GACNNNGTC	2 cut(s)	409, 607
PvuII	CAGCTG	2 cut(s)	979, 994
RsaI	GTAC	5 cut(s)	694, 907, 968, 1028, 1211
RsaNI	GTAC	5 cut(s)	693, 906, 967, 1027, 1210
SacI	GAGCTC	1 cut(s)	670
SaqAI	TTAA	3 cut(s)	726, 780, 1173
Sau3AI	GATC	4 cut(s)	342, 790, 807, 865
Sau96I	GGNCC	1 cut(s)	814
SchI	GAGTC	6 cut(s)	419, 508, 514, 596, 1468, 1514
ScrFI	CCNGG	2 cut(s)	812, 1339
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	4 cut(s)	23, 415, 441, 991
SfcI	CTRYAG	2 cut(s)	582, 1098
Sfr274I	CTCGAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	814
SlaI	CTCGAG	1 cut(s)	669
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	5 cut(s)	328, 542, 796, 890, 1069
SsiI	CCGC	8 cut(s)	23, 78, 126, 216, 247, 319, 333, 974
SspMI	CTAG	1 cut(s)	648
SstI	GAGCTC	1 cut(s)	670
StyD4I	CCNGG	2 cut(s)	810, 1337
TaaI	ACNGT	7 cut(s)	163, 826, 1085, 1324, 1358, 1419, 1496
TaiI	ACGT	1 cut(s)	1387
TaqI	TCGA	3 cut(s)	150, 363, 670
TasI	AATT	5 cut(s)	328, 542, 796, 890, 1069
TatI	WGTACW	1 cut(s)	1209
TauI	GCSGC	3 cut(s)	81, 129, 321
TfiI	GAWTC	3 cut(s)	770, 925, 1343
Tru1I	TTAA	3 cut(s)	726, 780, 1173
Tru9I	TTAA	3 cut(s)	726, 780, 1173
TscAI	CASTG	3 cut(s)	386, 726, 855
TseFI	GTSAC	2 cut(s)	850, 1385
Tsp45I	GTSAC	2 cut(s)	850, 1385
TspDTI	ATGAA	6 cut(s)	409, 618, 939, 1176, 1332, 1472
TspRI	CASTG	3 cut(s)	386, 726, 855
Tth111I	GACNNNGTC	2 cut(s)	409, 607
Van91I	CCANNNNNTGG	2 cut(s)	1241, 1274
VpaK11BI	GGWCC	1 cut(s)	814
VspI	ATTAAT	1 cut(s)	726
XapI	RAATTY	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	929
XhoI	CTCGAG	1 cut(s)	669
XmiI	GTMKAC	1 cut(s)	623
XspI	CTAG	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.