Prupe.3G167300_v2.0.a1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0024577
Physical Location & Seq
Forward (+)
18603984 .. 18604761
778 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G167300.1

Sequence Viewer

Length: 666 bp
ATGATGCTTGTTGATGGCTGCTTTATTATTGAACTTCTCCGCAAACAGGTCCACCTTTCTCCCGTGGAAGATGATGATGCTATTTTCAGGACGCCAAGGATGTTGTCGGCAATTACAAATGATTTGTTGCTAGTTGAAAACCAACTCCCTTGGAGGGTTCTTGACTGCTTATTCGAGGTCACAAGGGTAGATGCTGATGACCATGGGAATCCATCTCTACGTGAACTTGCTTGCCACGTCTTTCAGAACCCCGCATTTCAACAGTCATTTGAAAGTATATCGTCTCTAAACTGCGAAAAAGAATTCGAAAGTAGCCATTTACTCGAGACTGTAAGAAATTTTGTGGTTCAACCATGGGTGGAAGATTGGGAGGATATGGAATATCGAACTCCGATTCCTTCCGTGTCAGAGCTTCTAGAAATAGGAGTCAAATTTGTGGCTGCCTCATCCAATGGTCAGCTCCACATTACCTTTAGAAATGGAGTGATGGAGATTCCACCAATAATAATTCGAGAGGATACAGAAAGTTTCATCAGAAACCTCATAGCCTACGAACAATGTTTACAGAAGCCCGAGCAGTGTCAGGTGACCTCTTATGCCATCCTGTTCAGCCAACTTATTGAGTCTGTACAAGATGTGGACTTTCTGATTCAGAGAAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

222

Amino Acids

25.52

Weight (kDa)

4.53

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024577)

Species Orthologous Gene IDs
prunus_persica Prupe.3G167300_v2.0.a1 Prupe.3G167400_v2.0.a1 Prupe.3G167400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 664
AciI CCGC 2 cut(s) 40, 252
AcsI RAATTY 3 cut(s) 302, 337, 431
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 1 cut(s) 630
AfiI CCNNNNNNNGG 2 cut(s) 46, 154
AgsI TTSAA 5 cut(s) 32, 137, 260, 272, 350
AjiI CACGTC 1 cut(s) 238
AloI GAACNNNNNNTCC 2 cut(s) 379, 411
AluBI AGCT 2 cut(s) 412, 460
AluI AGCT 2 cut(s) 412, 460
Alw26I GTCTC 2 cut(s) 288, 320
Ama87I CYCGRG 2 cut(s) 323, 572
ApeKI GCWGC 2 cut(s) 18, 440
ApoI RAATTY 3 cut(s) 302, 337, 431
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 598
AsuII TTCGAA 1 cut(s) 306
AvaI CYCGRG 2 cut(s) 323, 572
AvaII GGWCC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 5, 427
BccI CCATC 4 cut(s) 8, 220, 481, 608
BciVI GTATCC 1 cut(s) 511
BcoDI GTCTC 2 cut(s) 288, 320
BfaI CTAG 2 cut(s) 131, 416
BfuI GTATCC 1 cut(s) 511
BisI GCNGC 2 cut(s) 19, 441
BlsI GCNGC 2 cut(s) 20, 442
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 2 cut(s) 323, 572
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 49
BmsI GCATC 2 cut(s) 67, 181
Bpu14I TTCGAA 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 5 cut(s) 63, 95, 149, 202, 353
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 154
BseDI CCNNGG 5 cut(s) 63, 95, 149, 202, 353
BseGI GGATG 3 cut(s) 105, 446, 600
BseLI CCNNNNNNNGG 2 cut(s) 46, 154
BseXI GCAGC 2 cut(s) 5, 427
BsiHKCI CYCGRG 2 cut(s) 323, 572
BslI CCNNNNNNNGG 2 cut(s) 46, 154
BsmAI GTCTC 2 cut(s) 288, 320
BsmBI CGTCTC 1 cut(s) 288
BsoBI CYCGRG 2 cut(s) 323, 572
Bsp119I TTCGAA 1 cut(s) 306
Bsp1407I TGTACA 1 cut(s) 628
Bsp19I CCATGG 2 cut(s) 202, 353
BspACI CCGC 2 cut(s) 40, 252
BspT104I TTCGAA 1 cut(s) 306
BsrGI TGTACA 1 cut(s) 628
BssECI CCNNGG 5 cut(s) 63, 95, 149, 202, 353
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 4 cut(s) 95, 149, 202, 353
Bst4CI ACNGT 2 cut(s) 264, 331
BstACI GRCGYC 1 cut(s) 92
BstAUI TGTACA 1 cut(s) 628
BstBAI YACGTR 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 232
BstDSI CCRYGG 3 cut(s) 63, 202, 353
BstEII GGTNACC 1 cut(s) 586
BstF5I GGATG 3 cut(s) 105, 446, 600
BstMAI GTCTC 2 cut(s) 288, 320
BstPI GGTNACC 1 cut(s) 586
BstV1I GCAGC 2 cut(s) 5, 427
BsuI GTATCC 1 cut(s) 511
BtgI CCRYGG 3 cut(s) 63, 202, 353
BtrI CACGTC 1 cut(s) 238
BtsCI GGATG 3 cut(s) 105, 446, 600
BtsI GCAGTG 1 cut(s) 584
BtsIMutI CAGTG 1 cut(s) 584
Cac8I GCNNGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 49
CseI GACGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 629
CviAII CATG 2 cut(s) 203, 354
CviJI RGCY 8 cut(s) 18, 315, 412, 440, 460, 548, 571, 612
CviKI_1 RGCY 8 cut(s) 18, 315, 412, 440, 460, 548, 571, 612
CviQI GTAC 1 cut(s) 629
Eco130I CCWWGG 4 cut(s) 95, 149, 202, 353
Eco47I GGWCC 1 cut(s) 49
Eco88I CYCGRG 2 cut(s) 323, 572
Eco91I GGTNACC 1 cut(s) 586
EcoO65I GGTNACC 1 cut(s) 586
EcoRI GAATTC 1 cut(s) 302
EcoT14I CCWWGG 4 cut(s) 95, 149, 202, 353
ErhI CCWWGG 4 cut(s) 95, 149, 202, 353
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 2 cut(s) 206, 357
FaiI YATR 7 cut(s) 204, 278, 355, 377, 545, 597, 664
FatI CATG 2 cut(s) 202, 353
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 19, 441
FokI GGATG 3 cut(s) 112, 433, 587
Fsp4HI GCNGC 2 cut(s) 19, 441
FspBI CTAG 2 cut(s) 131, 416
GluI GCNGC 2 cut(s) 19, 441
HgaI GACGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 2 cut(s) 206, 357
HinfI GANTC 6 cut(s) 208, 394, 426, 493, 623, 649
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 4 cut(s) 52, 224, 563, 640
Hpy188I TCNGA 6 cut(s) 246, 393, 409, 536, 648, 654
Hpy188III TCNNGA 5 cut(s) 88, 161, 325, 416, 512
Hpy8I GTNNAC 4 cut(s) 52, 224, 563, 640
HpyAV CCTTC 1 cut(s) 408
HpyCH4III ACNGT 2 cut(s) 264, 331
HpyCH4IV ACGT 2 cut(s) 220, 237
HpySE526I ACGT 2 cut(s) 220, 237
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 2 cut(s) 206, 357
LmnI GCTCC 1 cut(s) 465
LpnPI CCDG 4 cut(s) 32, 73, 569, 617
Lsp1109I GCAGC 2 cut(s) 5, 427
LweI GCATC 2 cut(s) 67, 181
MaeI CTAG 2 cut(s) 131, 416
MaeII ACGT 2 cut(s) 220, 237
MaeIII GTNAC 2 cut(s) 178, 586
MboII GAAGA 2 cut(s) 80, 374
MluCI AATT 6 cut(s) 111, 302, 337, 431, 507, 659
MlyI GAGTC 2 cut(s) 435, 632
MnlI CCTC 7 cut(s) 147, 169, 364, 454, 508, 551, 601
NcoI CCATGG 2 cut(s) 202, 353
NlaIII CATG 2 cut(s) 206, 357
NmuCI GTSAC 2 cut(s) 178, 586
NspV TTCGAA 1 cut(s) 306
PaeR7I CTCGAG 1 cut(s) 323
PfeI GAWTC 4 cut(s) 208, 394, 493, 649
PkrI GCNGC 2 cut(s) 20, 442
PleI GAGTC 2 cut(s) 434, 631
PpsI GAGTC 2 cut(s) 434, 631
Ppu21I YACGTR 1 cut(s) 221
PsiI TTATAA 1 cut(s) 664
PspEI GGTNACC 1 cut(s) 586
PspPI GGNCC 1 cut(s) 49
PsrI GAACNNNNNNTAC 2 cut(s) 546, 578
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
SatI GCNGC 2 cut(s) 19, 441
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 2 cut(s) 435, 632
SfaNI GCATC 2 cut(s) 67, 181
Sfr274I CTCGAG 1 cut(s) 323
SfuI TTCGAA 1 cut(s) 306
SinI GGWCC 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 6 cut(s) 111, 302, 337, 431, 507, 659
SsiI CCGC 2 cut(s) 40, 252
SspMI CTAG 2 cut(s) 131, 416
StyI CCWWGG 4 cut(s) 95, 149, 202, 353
TaaI ACNGT 2 cut(s) 264, 331
TaiI ACGT 2 cut(s) 223, 240
TaqI TCGA 5 cut(s) 174, 306, 324, 385, 511
TasI AATT 6 cut(s) 111, 302, 337, 431, 507, 659
TatI WGTACW 1 cut(s) 628
TfiI GAWTC 4 cut(s) 208, 394, 493, 649
TscAI CASTG 1 cut(s) 584
TseFI GTSAC 2 cut(s) 178, 586
TseI GCWGC 2 cut(s) 18, 440
Tsp45I GTSAC 2 cut(s) 178, 586
TspDTI ATGAA 1 cut(s) 520
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 3 cut(s) 302, 337, 431
XbaI TCTAGA 1 cut(s) 415
XhoI CTCGAG 1 cut(s) 323
XspI CTAG 2 cut(s) 131, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.