Prupe.3G167400_v2.0.a1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0024577
Physical Location & Seq
Forward (+)
18615345 .. 18619325
3981 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G167400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1035 bp
ATGGAAGAAACGGAAGAGACGATCATGATGTCAGACAGCTATGCGGACGGTTTTTTACTATTCTTGTCAAGAAAACTTGACTGCGCATCACCATTACCATCTCGTAGTTCCATATACAGAGTCCCAGAAACACTACGAAGGTACAATGAAATGGCCCCAAATCTGGTTTCAATTGGGCCATTTCACCATGGAAGACCGCGTTTGCAAGCCATGGAAGAAATGAAAATGTGGTATTTGAAATGCCTTCTTCGTAAACTAACTCCAGACAACGGTTTGGCGTACCTTATCAATATAATTAAAAATCAAGAAATTTTTTGTCGTGATTGCTATGAAGAAAGGGTTCCTCTGGGTAGTGATGAATTTGTAGAAATGATGCTTGTTGATGGCTGCTTTATTATTGAACTTCTCCGCAAACAGGTCCACCTTTCTCCCGTGGAAGATGATGATGCTATTTTCAGGACGCCAAGGATGTTGTCGACAATTACAAATGATTTGTTGCTAGTTGAAAACCAACTCCCTTGGAGGGTTCTTGACTGCTTATTCGAGGTCACAAGGGTAGATGATGATGACCATGGGAATCCATCTCTACGTGAACTTGCTTGCCACGTCTTTCAGAACCCCGCATTTCAACAGTCATTTGAAAGTATATCGTCTCTAAACTGCGAAAAAGAATTCGAAAGTAGCCATTTACTCGAGACTGTAAGAAATTTTGTGGTTCAACCATGGGTGGAAGATTGGGAGGATATGGAATATCGAACTCCGATTCCTTCCGTGTCAGAGCTTCTAGAAATAGGAGTCAAATTTGTGGCTGCCTCATCCAATGGTCAGCTCCACATTACCTTTAGAAATGGAGTGATGGAGATTCCACCAATAATAATTCGAGAGGATACAGAAAGTTTCATCAGAAACCTCATAGCCTACGAACAATGTTTACAGAAGCCCGAGCAGTGTCAGGTGACCTCTTATGCCATCCTGTTCAGCCAACTTATTGAGTCTGTACAAGATGTGGACTTTCTGATTCAGAGAAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

345

Amino Acids

39.99

Weight (kDa)

4.69

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024577)

Species Orthologous Gene IDs
prunus_persica Prupe.3G167300_v2.0.a1 Prupe.3G167400_v2.0.a1 Prupe.3G167400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1033
Acc16I TGCGCA 1 cut(s) 85
AccI GTMKAC 1 cut(s) 476
AccII CGCG 1 cut(s) 199
AciI CCGC 4 cut(s) 44, 197, 409, 621
AcsI RAATTY 5 cut(s) 309, 359, 671, 706, 800
AcyI GRCGYC 1 cut(s) 461
AfaI GTAC 3 cut(s) 143, 281, 999
AfiI CCNNNNNNNGG 4 cut(s) 163, 269, 415, 523
AgsI TTSAA 7 cut(s) 171, 238, 401, 506, 629, 641, 719
AjiI CACGTC 1 cut(s) 607
AjuI GAANNNNNNNTTGG 2 cut(s) 151, 183
AloI GAACNNNNNNTCC 2 cut(s) 748, 780
AluBI AGCT 3 cut(s) 39, 781, 829
AluI AGCT 3 cut(s) 39, 781, 829
Alw26I GTCTC 3 cut(s) 11, 657, 689
Ama87I CYCGRG 2 cut(s) 692, 941
AoxI GGCC 2 cut(s) 153, 176
ApeKI GCWGC 2 cut(s) 387, 809
ApoI RAATTY 5 cut(s) 309, 359, 671, 706, 800
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 3 cut(s) 154, 176, 418
AsuHPI GGTGA 3 cut(s) 81, 176, 967
AsuII TTCGAA 1 cut(s) 675
AvaI CYCGRG 2 cut(s) 692, 941
AvaII GGWCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 374, 796
BccI CCATC 5 cut(s) 106, 377, 589, 850, 977
BciVI GTATCC 1 cut(s) 880
BcoDI GTCTC 3 cut(s) 11, 657, 689
BfaI CTAG 2 cut(s) 500, 785
BfuI GTATCC 1 cut(s) 880
BisI GCNGC 2 cut(s) 388, 810
BlsI GCNGC 2 cut(s) 389, 811
Bme18I GGWCC 1 cut(s) 418
BmeT110I CYCGRG 2 cut(s) 692, 941
BmgBI CACGTC 1 cut(s) 607
BmgT120I GGNCC 3 cut(s) 154, 176, 418
BmiI GGNNCC 2 cut(s) 156, 342
BmsI GCATC 3 cut(s) 95, 363, 436
BpiI GAAGAC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 675
BsaAI YACGTR 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 461
BsaJI CCNNGG 7 cut(s) 187, 210, 432, 464, 518, 571, 722
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 269, 415, 523
BseDI CCNNGG 7 cut(s) 187, 210, 432, 464, 518, 571, 722
BseGI GGATG 3 cut(s) 474, 815, 969
BseLI CCNNNNNNNGG 4 cut(s) 163, 269, 415, 523
BseXI GCAGC 2 cut(s) 374, 796
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 2 cut(s) 155, 178
BsiHKCI CYCGRG 2 cut(s) 692, 941
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 4 cut(s) 163, 269, 415, 523
BsmAI GTCTC 3 cut(s) 11, 657, 689
BsmBI CGTCTC 2 cut(s) 11, 657
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 2 cut(s) 155, 178
BsoBI CYCGRG 2 cut(s) 692, 941
Bsp119I TTCGAA 1 cut(s) 675
Bsp1407I TGTACA 1 cut(s) 997
Bsp143I GATC 1 cut(s) 21
Bsp19I CCATGG 4 cut(s) 187, 210, 571, 722
BspACI CCGC 4 cut(s) 44, 197, 409, 621
BspANI GGCC 2 cut(s) 155, 178
BspFNI CGCG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 156, 342
BspT104I TTCGAA 1 cut(s) 675
BsrGI TGTACA 1 cut(s) 997
BssECI CCNNGG 7 cut(s) 187, 210, 432, 464, 518, 571, 722
BssMI GATC 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 461
BssT1I CCWWGG 6 cut(s) 187, 210, 464, 518, 571, 722
Bst4CI ACNGT 4 cut(s) 50, 272, 633, 700
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 461
BstAUI TGTACA 1 cut(s) 997
BstBAI YACGTR 1 cut(s) 590
BstBI TTCGAA 1 cut(s) 675
BstC8I GCNNGC 2 cut(s) 207, 601
BstDSI CCRYGG 5 cut(s) 187, 210, 432, 571, 722
BstEII GGTNACC 1 cut(s) 955
BstF5I GGATG 3 cut(s) 474, 815, 969
BstFNI CGCG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 3 cut(s) 11, 657, 689
BstMBI GATC 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 955
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 2 cut(s) 374, 796
BstV2I GAAGAC 1 cut(s) 199
BsuI GTATCC 1 cut(s) 880
BsuRI GGCC 2 cut(s) 155, 178
BtgI CCRYGG 5 cut(s) 187, 210, 432, 571, 722
BtrI CACGTC 1 cut(s) 607
BtsCI GGATG 3 cut(s) 474, 815, 969
BtsI GCAGTG 1 cut(s) 953
BtsIMutI CAGTG 1 cut(s) 953
Cac8I GCNNGC 2 cut(s) 207, 601
CciI TCATGA 1 cut(s) 24
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 154, 176, 418
CseI GACGC 1 cut(s) 469
Csp6I GTAC 3 cut(s) 142, 280, 998
CviAII CATG 5 cut(s) 25, 188, 211, 572, 723
CviQI GTAC 3 cut(s) 142, 280, 998
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco130I CCWWGG 6 cut(s) 187, 210, 464, 518, 571, 722
Eco47I GGWCC 1 cut(s) 418
Eco88I CYCGRG 2 cut(s) 692, 941
Eco91I GGTNACC 1 cut(s) 955
EcoO65I GGTNACC 1 cut(s) 955
EcoRI GAATTC 1 cut(s) 671
EcoT14I CCWWGG 6 cut(s) 187, 210, 464, 518, 571, 722
ErhI CCWWGG 6 cut(s) 187, 210, 464, 518, 571, 722
Esp3I CGTCTC 2 cut(s) 11, 657
FaeI CATG 5 cut(s) 28, 191, 214, 575, 726
FaqI GGGAC 1 cut(s) 107
FatI CATG 5 cut(s) 24, 187, 210, 571, 722
FauI CCCGC 1 cut(s) 628
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 2 cut(s) 388, 810
FokI GGATG 3 cut(s) 481, 802, 956
Fsp4HI GCNGC 2 cut(s) 388, 810
FspBI CTAG 2 cut(s) 500, 785
FspI TGCGCA 1 cut(s) 85
GlaI GCGC 1 cut(s) 85
GluI GCNGC 2 cut(s) 388, 810
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 2 cut(s) 155, 178
HgaI GACGC 1 cut(s) 469
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 461
Hin1II CATG 5 cut(s) 28, 191, 214, 575, 726
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HinfI GANTC 7 cut(s) 120, 577, 763, 795, 862, 992, 1018
HphI GGTGA 3 cut(s) 81, 176, 967
Hpy166II GTNNAC 6 cut(s) 254, 421, 477, 593, 932, 1009
Hpy188I TCNGA 7 cut(s) 34, 615, 762, 778, 905, 1017, 1023
Hpy8I GTNNAC 6 cut(s) 254, 421, 477, 593, 932, 1009
HpyAV CCTTC 3 cut(s) 132, 254, 777
HpyCH4III ACNGT 4 cut(s) 50, 272, 633, 700
HpyCH4IV ACGT 2 cut(s) 589, 606
HpyCH4V TGCA 1 cut(s) 205
HpySE526I ACGT 2 cut(s) 589, 606
Hsp92I GRCGYC 1 cut(s) 461
Hsp92II CATG 5 cut(s) 28, 191, 214, 575, 726
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 834
LpnPI CCDG 8 cut(s) 138, 149, 276, 332, 401, 442, 938, 986
Lsp1109I GCAGC 2 cut(s) 374, 796
LweI GCATC 3 cut(s) 95, 363, 436
MaeI CTAG 2 cut(s) 500, 785
MaeII ACGT 2 cut(s) 589, 606
MaeIII GTNAC 2 cut(s) 547, 955
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 8 cut(s) 17, 26, 204, 227, 239, 344, 449, 743
MfeI CAATTG 1 cut(s) 171
MlyI GAGTC 3 cut(s) 129, 804, 1001
MnlI CCTC 8 cut(s) 354, 516, 538, 733, 823, 877, 920, 970
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 1 cut(s) 297
MunI CAATTG 1 cut(s) 171
MvnI CGCG 1 cut(s) 199
NcoI CCATGG 4 cut(s) 187, 210, 571, 722
NdeII GATC 1 cut(s) 21
NlaIII CATG 5 cut(s) 28, 191, 214, 575, 726
NlaIV GGNNCC 2 cut(s) 156, 342
NmuCI GTSAC 2 cut(s) 547, 955
NsbI TGCGCA 1 cut(s) 85
NspV TTCGAA 1 cut(s) 675
PaeR7I CTCGAG 1 cut(s) 692
PagI TCATGA 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 4 cut(s) 577, 763, 862, 1018
PkrI GCNGC 2 cut(s) 389, 811
PleI GAGTC 3 cut(s) 128, 803, 1000
PpsI GAGTC 3 cut(s) 128, 803, 1000
Ppu21I YACGTR 1 cut(s) 590
PsiI TTATAA 1 cut(s) 1033
PspEI GGTNACC 1 cut(s) 955
PspN4I GGNNCC 2 cut(s) 156, 342
PspPI GGNCC 3 cut(s) 154, 176, 418
PsrI GAACNNNNNNTAC 2 cut(s) 915, 947
RsaI GTAC 3 cut(s) 143, 281, 999
RsaNI GTAC 3 cut(s) 142, 280, 998
SalI GTCGAC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 2 cut(s) 388, 810
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 3 cut(s) 154, 176, 418
SchI GAGTC 3 cut(s) 129, 804, 1001
SfaNI GCATC 3 cut(s) 95, 363, 436
Sfr274I CTCGAG 1 cut(s) 692
SfuI TTCGAA 1 cut(s) 675
SinI GGWCC 1 cut(s) 418
SlaI CTCGAG 1 cut(s) 692
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
SsiI CCGC 4 cut(s) 44, 197, 409, 621
SspMI CTAG 2 cut(s) 500, 785
StyI CCWWGG 6 cut(s) 187, 210, 464, 518, 571, 722
TaaI ACNGT 4 cut(s) 50, 272, 633, 700
TaiI ACGT 2 cut(s) 592, 609
TaqI TCGA 6 cut(s) 476, 543, 675, 693, 754, 880
TatI WGTACW 1 cut(s) 997
TfiI GAWTC 4 cut(s) 577, 763, 862, 1018
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 953
TseFI GTSAC 2 cut(s) 547, 955
TseI GCWGC 2 cut(s) 387, 809
Tsp45I GTSAC 2 cut(s) 547, 955
TspDTI ATGAA 5 cut(s) 162, 236, 345, 372, 889
TspGWI ACGGA 2 cut(s) 26, 760
TspRI CASTG 1 cut(s) 953
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 5 cut(s) 309, 359, 671, 706, 800
XbaI TCTAGA 1 cut(s) 784
XhoI CTCGAG 1 cut(s) 692
XmiI GTMKAC 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 2 cut(s) 500, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.