Prupe.3G173700_v2.0.a1

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014578
Physical Location & Seq
Reverse (-)
19109639 .. 19110439
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G173700.1

Sequence Viewer

Length: 801 bp
ATGGCAGGAGGTGCAGATCTACCAGTGCCTTCTGTTGTGTCCAAAACTGCAATTGATCGGAGCCAAGACGCTGATAAAAGTAACAGCCACCACAGGCCTGGCATTGATGCAATACTTATGGCACCCAAGTTACCAAAGGCAGTGCCACCAATTTCTGCAGCAGCTGAGGGGGAGAGTATCCGGAGGCCACGTGGCAGGCCTGCTGGTTCCAAAAACAAGCCAAAACCGCCCATCATAGTCACCCGTGACAGCGCTAATGCACTTCGTGCTCATGCTATGGAAGTAAGTTCAGGCTGTGATGTGAGTGAAAGCCTAACCAACTTTGCAAGGAGGAAGCAAAGGGGCATTTGCATACTGAGTGGAAGTGGCTGTGTGACCAATGTCACATTGCGACAACCAGCTTCCTCTGGAGCAATTGTGACCCTCCATGGCCGGTTTGAAATTCTCTCGTTGCTCGGGTCAATCTTGCCCCCTCCAGCCCCTCCTGGGATCACAGGCCTGACCATCTATCTAGCAGGGGCTCAGGGGCAGGTTGTGGGTGGGAGTGTGGTTGGTGCACTCATTGCTTCAGGGCCTGTTGTGATCATGGCTGCATCGTTCATGAATGCTACTTTTGATCGTCTGCCACTGGATGAAGATGAAGTTGCTGCAGCTTTGCAAAACCAACAATACCAAAATGGCCGTCACCACCACCTGGATATTTCGGATTTATACGGACTTCCACCGAACCTGCTCACTAATGGCAATGTGCCTCCTGAGGTGTACTCCTGGGCATCAGGCCGGACCATGTCAAAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

267

Amino Acids

27.75

Weight (kDa)

9.27

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42940
fragaria_vesca FvH4_6g38311
malus_domestica MD09G1151100.v1.1 MD17G1138700.v1.1
prunus_persica Prupe.3G173700_v2.0.a1
pyrus_communis pycom09g07090 pycom17g13180
rosa_chinensis RchiOBHm_Chr2g0151621
rosa_laevigata RLG00000020564
rosa_multiflora Rmu_sc0005287.1_g000005
rosa_roxburghii Rroxscaffold_2G00096310
rosa_rugosa Rorug02G0427300
rosa_samantha Rh2AG488200 Rh2BG500800 Rh2CG474700 Rh2DG511900
rosa_wichuraiana Rw2G040020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 520, 738
AccB1I GGYRCC 1 cut(s) 121
AccB7I CCANNNNNTGG 1 cut(s) 694
AccIII TCCGGA 1 cut(s) 180
AciI CCGC 1 cut(s) 227
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 2 cut(s) 430, 679
AcsI RAATTY 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 552
AcvI CACGTG 1 cut(s) 191
AdeI CACNNNGTG 1 cut(s) 266
AfaI GTAC 1 cut(s) 764
AfeI AGCGCT 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 486, 694
AgsI TTSAA 1 cut(s) 440
AjnI CCWGG 4 cut(s) 97, 484, 693, 767
AluBI AGCT 3 cut(s) 164, 401, 653
AluI AGCT 3 cut(s) 164, 401, 653
Alw21I GWGCWC 2 cut(s) 271, 559
Alw44I GTGCAC 1 cut(s) 555
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 2 cut(s) 164, 575
Ama87I CYCGRG 1 cut(s) 455
Aor13HI TCCGGA 1 cut(s) 180
Aor51HI AGCGCT 1 cut(s) 253
AoxI GGCC 8 cut(s) 95, 185, 197, 430, 496, 572, 679, 778
ApaLI GTGCAC 1 cut(s) 555
ApeKI GCWGC 5 cut(s) 158, 161, 590, 647, 650
ApoI RAATTY 1 cut(s) 441
ArsI GACNNNNNNTTYG 2 cut(s) 667, 699
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 2 cut(s) 572, 783
AsuHPI GGTGA 2 cut(s) 232, 677
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 1 cut(s) 783
AxyI CCTNAGG 1 cut(s) 756
BaeGI GKGCMC 1 cut(s) 559
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 523
BbrPI CACGTG 1 cut(s) 191
Bbv12I GWGCWC 2 cut(s) 271, 559
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 5 cut(s) 170, 173, 577, 634, 662
BccI CCATC 2 cut(s) 239, 512
BceAI ACGGC 1 cut(s) 666
BciT130I CCWGG 4 cut(s) 99, 486, 695, 769
BciVI GTATCC 1 cut(s) 188
BclI TGATCA 1 cut(s) 582
BfaI CTAG 1 cut(s) 512
BfmI CTRYAG 2 cut(s) 156, 648
BfoI RGCGCY 1 cut(s) 255
BfuAI ACCTGC 2 cut(s) 520, 738
BfuI GTATCC 1 cut(s) 188
BglII AGATCT 1 cut(s) 16
BisI GCNGC 5 cut(s) 159, 162, 591, 648, 651
BlsI GCNGC 5 cut(s) 160, 163, 592, 649, 652
Bme1390I CCNGG 4 cut(s) 99, 486, 695, 769
Bme18I GGWCC 1 cut(s) 783
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 2 cut(s) 572, 783
BmiI GGNNCC 3 cut(s) 62, 123, 208
BmrFI CCNGG 4 cut(s) 99, 486, 695, 769
BmsI GCATC 3 cut(s) 97, 602, 782
BoxI GACNNNNGTC 1 cut(s) 380
BplI GAGNNNNNCTC 2 cut(s) 749, 781
BpmI CTGGAG 2 cut(s) 429, 459
Bpu10I CCTNAGC 2 cut(s) 165, 522
BsaAI YACGTR 1 cut(s) 191
BsaJI CCNNGG 3 cut(s) 427, 485, 768
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 402, 432
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 694
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 2 cut(s) 23, 633
Bse21I CCTNAGG 1 cut(s) 756
Bse3DI GCAATG 3 cut(s) 386, 561, 751
BseAI TCCGGA 1 cut(s) 180
BseBI CCWGG 4 cut(s) 99, 486, 695, 769
BseDI CCNNGG 3 cut(s) 427, 485, 768
BseGI GGATG 1 cut(s) 637
BseLI CCNNNNNNNGG 2 cut(s) 486, 694
BseMI GCAATG 3 cut(s) 386, 561, 751
BseMII CTCAG 4 cut(s) 156, 347, 536, 747
BseNI ACTGG 2 cut(s) 23, 633
BseSI GKGCMC 1 cut(s) 559
BseXI GCAGC 5 cut(s) 170, 173, 577, 634, 662
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 8 cut(s) 97, 187, 199, 432, 498, 574, 681, 780
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 271, 559
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 3 cut(s) 181, 433, 781
BslI CCNNNNNNNGG 2 cut(s) 486, 694
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 8 cut(s) 97, 187, 199, 432, 498, 574, 681, 780
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 3 cut(s) 271, 523, 559
Bsp13I TCCGGA 1 cut(s) 180
Bsp143I GATC 5 cut(s) 16, 55, 489, 582, 616
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 1 cut(s) 227
BspANI GGCC 8 cut(s) 97, 187, 199, 432, 498, 574, 681, 780
BspCNI CTCAG 4 cut(s) 157, 348, 535, 748
BspEI TCCGGA 1 cut(s) 180
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 3 cut(s) 62, 123, 208
BspMAI CTGCAG 2 cut(s) 160, 652
BspMI ACCTGC 2 cut(s) 520, 738
BspPI GGATC 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 3 cut(s) 386, 561, 751
BsrFI RCCGGY 1 cut(s) 432
BsrI ACTGG 2 cut(s) 23, 633
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 3 cut(s) 427, 485, 768
BssMI GATC 5 cut(s) 16, 55, 489, 582, 616
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 4 cut(s) 99, 486, 695, 769
BstAPI GCANNNNNTGC 3 cut(s) 11, 266, 563
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 197, 201
BstDEI CTNAG 4 cut(s) 165, 356, 522, 756
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 1 cut(s) 637
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 5 cut(s) 19, 58, 492, 585, 619
BstMBI GATC 5 cut(s) 16, 55, 489, 582, 616
BstMWI GCNNNNNNNGC 4 cut(s) 11, 226, 266, 563
BstNI CCWGG 4 cut(s) 99, 486, 695, 769
BstPAI GACNNNNGTC 1 cut(s) 380
BstSCI CCNGG 4 cut(s) 97, 484, 693, 767
BstSFI CTRYAG 2 cut(s) 156, 648
BstSLI GKGCMC 1 cut(s) 559
BstV1I GCAGC 5 cut(s) 170, 173, 577, 634, 662
BstX2I RGATCY 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 756
BsuI GTATCC 1 cut(s) 188
BsuRI GGCC 8 cut(s) 97, 187, 199, 432, 498, 574, 681, 780
BtgI CCRYGG 1 cut(s) 427
BtsCI GGATG 1 cut(s) 637
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 3 cut(s) 30, 147, 626
BveI ACCTGC 2 cut(s) 520, 738
Cac8I GCNNGC 2 cut(s) 197, 201
CaiI CAGNNNCTG 2 cut(s) 164, 575
CciI TCATGA 1 cut(s) 600
CfoI GCGC 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 572, 783
CseI GACGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 763
CviAII CATG 5 cut(s) 272, 428, 586, 601, 787
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 4 cut(s) 165, 356, 522, 756
DpnI GATC 5 cut(s) 18, 57, 491, 584, 618
DpnII GATC 5 cut(s) 16, 55, 489, 582, 616
DraIII CACNNNGTG 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 430, 679
Eco130I CCWWGG 1 cut(s) 427
Eco147I AGGCCT 3 cut(s) 97, 199, 498
Eco24I GRGCYC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 783
Eco47III AGCGCT 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 552
Eco72I CACGTG 1 cut(s) 191
Eco81I CCTNAGG 1 cut(s) 756
Eco88I CYCGRG 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 572
EcoRII CCWGG 4 cut(s) 97, 484, 693, 767
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 5 cut(s) 275, 431, 589, 604, 790
FatI CATG 5 cut(s) 271, 427, 585, 600, 786
FbaI TGATCA 1 cut(s) 582
Fnu4HI GCNGC 5 cut(s) 159, 162, 591, 648, 651
FokI GGATG 1 cut(s) 644
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 5 cut(s) 159, 162, 591, 648, 651
FspBI CTAG 1 cut(s) 512
GlaI GCGC 1 cut(s) 253
GluI GCNGC 5 cut(s) 159, 162, 591, 648, 651
GsuI CTGGAG 2 cut(s) 429, 459
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 8 cut(s) 97, 187, 199, 432, 498, 574, 681, 780
HapII CCGG 3 cut(s) 181, 433, 781
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 254
Hin1II CATG 5 cut(s) 275, 431, 589, 604, 790
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HpaII CCGG 3 cut(s) 181, 433, 781
HphI GGTGA 2 cut(s) 232, 677
Hpy166II GTNNAC 2 cut(s) 557, 763
Hpy188I TCNGA 2 cut(s) 60, 706
Hpy188III TCNNGA 4 cut(s) 181, 408, 601, 755
Hpy8I GTNNAC 2 cut(s) 557, 763
HpyAV CCTTC 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 226, 266, 563
HpyF3I CTNAG 4 cut(s) 165, 356, 522, 756
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 5 cut(s) 275, 431, 589, 604, 790
HspAI GCGC 1 cut(s) 252
Kpn2I TCCGGA 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 582
Kzo9I GATC 5 cut(s) 16, 55, 489, 582, 616
LmnI GCTCC 2 cut(s) 60, 410
Lsp1109I GCAGC 5 cut(s) 170, 173, 577, 634, 662
LweI GCATC 3 cut(s) 97, 602, 782
MaeI CTAG 1 cut(s) 512
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 8 cut(s) 80, 129, 238, 245, 373, 382, 418, 683
MalI GATC 5 cut(s) 18, 57, 491, 584, 618
MboI GATC 5 cut(s) 16, 55, 489, 582, 616
MboII GAAGA 1 cut(s) 647
MfeI CAATTG 2 cut(s) 51, 414
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 3 cut(s) 271, 523, 559
MluCI AATT 4 cut(s) 51, 150, 414, 441
MnlI CCTC 9 cut(s) 160, 177, 324, 415, 434, 483, 492, 751, 762
MroI TCCGGA 1 cut(s) 180
MseI TTAA 1 cut(s) 799
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 3 cut(s) 181, 433, 781
MspR9I CCNGG 4 cut(s) 99, 486, 695, 769
MunI CAATTG 2 cut(s) 51, 414
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 4 cut(s) 99, 486, 695, 769
MwoI GCNNNNNNNGC 4 cut(s) 11, 226, 266, 563
NcoI CCATGG 1 cut(s) 427
NdeII GATC 5 cut(s) 16, 55, 489, 582, 616
NlaIII CATG 5 cut(s) 275, 431, 589, 604, 790
NlaIV GGNNCC 3 cut(s) 62, 123, 208
NmuCI GTSAC 6 cut(s) 238, 245, 373, 382, 418, 683
PagI TCATGA 1 cut(s) 600
PceI AGGCCT 3 cut(s) 97, 199, 498
PctI GAATGC 1 cut(s) 610
PflFI GACNNNGTC 1 cut(s) 787
PflMI CCANNNNNTGG 1 cut(s) 694
PkrI GCNGC 5 cut(s) 160, 163, 592, 649, 652
PmaCI CACGTG 1 cut(s) 191
PmlI CACGTG 1 cut(s) 191
Ppu21I YACGTR 1 cut(s) 191
PshAI GACNNNNGTC 1 cut(s) 380
Psp6I CCWGG 4 cut(s) 97, 484, 693, 767
PspCI CACGTG 1 cut(s) 191
PspGI CCWGG 4 cut(s) 97, 484, 693, 767
PspN4I GGNNCC 3 cut(s) 62, 123, 208
PspPI GGNCC 2 cut(s) 572, 783
PstI CTGCAG 2 cut(s) 160, 652
PstNI CAGNNNCTG 2 cut(s) 164, 575
PsuI RGATCY 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 787
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
SaqAI TTAA 1 cut(s) 799
SatI GCNGC 5 cut(s) 159, 162, 591, 648, 651
Sau3AI GATC 5 cut(s) 16, 55, 489, 582, 616
Sau96I GGNCC 2 cut(s) 572, 783
ScrFI CCNGG 4 cut(s) 99, 486, 695, 769
SduI GDGCHC 3 cut(s) 271, 523, 559
SetI ASST 9 cut(s) 13, 166, 193, 403, 534, 655, 696, 732, 762
SfaNI GCATC 3 cut(s) 97, 602, 782
SfcI CTRYAG 2 cut(s) 156, 648
SinI GGWCC 1 cut(s) 783
Sse9I AATT 4 cut(s) 51, 150, 414, 441
SseBI AGGCCT 3 cut(s) 97, 199, 498
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 512
StuI AGGCCT 3 cut(s) 97, 199, 498
StyD4I CCNGG 4 cut(s) 97, 484, 693, 767
StyI CCWWGG 1 cut(s) 427
TaiI ACGT 1 cut(s) 193
TasI AATT 4 cut(s) 51, 150, 414, 441
TatI WGTACW 1 cut(s) 762
Tru1I TTAA 1 cut(s) 799
Tru9I TTAA 1 cut(s) 799
TscAI CASTG 3 cut(s) 30, 147, 633
TseFI GTSAC 6 cut(s) 238, 245, 373, 382, 418, 683
TseI GCWGC 5 cut(s) 158, 161, 590, 647, 650
Tsp45I GTSAC 6 cut(s) 238, 245, 373, 382, 418, 683
TspDTI ATGAA 4 cut(s) 589, 617, 648, 654
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 3 cut(s) 30, 147, 633
Tth111I GACNNNGTC 1 cut(s) 787
Van91I CCANNNNNTGG 1 cut(s) 694
VneI GTGCAC 1 cut(s) 555
VpaK11BI GGWCC 1 cut(s) 783
XapI RAATTY 1 cut(s) 441
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.