Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0020422

Physical Location & Seq

Genomic Coordinates Forward (+)

19510211 .. 19513827

Gene Structure 3617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G178600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAACGAAGAAATGAAAAGTTATCAGAAAATTGGAGTGAGGAACTACCAGAAATCTGATCACCCACGCCTGCGCTGGACACCTCAACTCCATGAACTGTTTGTTGAAGCTGTTGAAAGTCTTGGTGGAAAACACAAAGCAACACCCAAGCGCATTCTGCAGACTATGAGTGTTAAGGGACTGAAAATTTCTCATGTCAAAAGCCATCTGCAGATGTACAGGGGCGTGAATGATAATGCACATTCTCAAGATCATAGCAGTAATGTCTTCTCCATTTTCTCACCTCAAACTCAAACTCAAAGGCCATCAGAAAATTATTATTTAAGATATGAGCCGCATGTAATGTTTTCTGAAACGGATGAGGAAACAAAAGGACGTATATTAACACGAGAGGAAGCTGCAGGCAAGCAACAAAATCAGGTACTTCAAGCACAGAAGTATCATTTGCACCAAACCAGTTTTGAGAAGAATGCTCATACCCCAGAACTCAGCAGATTGTCTATGGATGAAGAAACTTGTCAACTATATGGATTTTCTGAGCTCTCATTATCGTTTAATCCGACTGTTACTACCATGGCGCAGTTCCGAAAAGAAAGCAAGTTGTGGCCTTCTGCTGATGAACACAATACTTCTCAGTCCAGCTCAACTGGAAATTTCAGTAACATTCAGGATTTCCAAGAGGTTGGAAGCAATGATATAAACTTGGACTTAACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

240

Amino Acids

27.55

Weight (kDa)

6.46

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020422)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G178600_v2.0.a1 Prupe.3G178600_v2.0.a1 Prupe.3G178600_v2.0.a1 Prupe.3G178600_v2.0.a1 Prupe.3G178600_v2.0.a1
pyrus_communis	pycom09g06710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	335
AcsI	RAATTY	2 cut(s)	186, 652
AfaI	GTAC	2 cut(s)	218, 423
AgsI	TTSAA	3 cut(s)	107, 116, 428
AluBI	AGCT	4 cut(s)	110, 398, 541, 642
AluI	AGCT	4 cut(s)	110, 398, 541, 642
Alw21I	GWGCWC	1 cut(s)	543
AoxI	GGCC	2 cut(s)	302, 605
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	2 cut(s)	186, 652
AspLEI	GCGC	3 cut(s)	75, 153, 580
AsuHPI	GGTGA	2 cut(s)	53, 273
BaeI	ACNNNNGTAYC	2 cut(s)	422, 455
BanII	GRGCYC	1 cut(s)	543
BauI	CACGAG	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	2 cut(s)	213, 313
BclI	TGATCA	1 cut(s)	58
BfmI	CTRYAG	3 cut(s)	158, 209, 399
BisI	GCNGC	2 cut(s)	335, 399
BlsI	GCNGC	2 cut(s)	336, 400
BpiI	GAAGAC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	573
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bse1I	ACTGG	2 cut(s)	456, 652
Bse3DI	GCAATG	1 cut(s)	697
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	2 cut(s)	364, 511
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	3 cut(s)	502, 528, 647
BseNI	ACTGG	2 cut(s)	456, 652
BseXI	GCAGC	1 cut(s)	385
BshFI	GGCC	2 cut(s)	304, 607
BsiHKAI	GWGCWC	1 cut(s)	543
BslFI	GGGAC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	2 cut(s)	153, 475
BsnI	GGCC	2 cut(s)	304, 607
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	58, 250
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	2 cut(s)	304, 607
BspCNI	CTCAG	3 cut(s)	501, 529, 646
BspMAI	CTGCAG	3 cut(s)	162, 213, 403
BsrDI	GCAATG	1 cut(s)	697
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	456, 652
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	2 cut(s)	58, 250
BssSI	CACGAG	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	573
Bst2BI	CACGAG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	99, 565
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	71, 403, 407
BstDEI	CTNAG	3 cut(s)	488, 537, 633
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	2 cut(s)	364, 511
BstHHI	GCGC	3 cut(s)	75, 153, 580
BstKTI	GATC	2 cut(s)	61, 253
BstMBI	GATC	2 cut(s)	58, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	341
BstSFI	CTRYAG	3 cut(s)	158, 209, 399
BstV1I	GCAGC	1 cut(s)	385
BstV2I	GAAGAC	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	304, 607
BtgI	CCRYGG	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	364, 511
Cac8I	GCNNGC	3 cut(s)	71, 403, 407
CfoI	GCGC	3 cut(s)	75, 153, 580
Csp6I	GTAC	2 cut(s)	217, 422
CviAII	CATG	4 cut(s)	92, 194, 338, 574
CviJI	RGCY	8 cut(s)	110, 204, 304, 334, 398, 541, 607, 642
CviKI_1	RGCY	8 cut(s)	110, 204, 304, 334, 398, 541, 607, 642
CviQI	GTAC	2 cut(s)	217, 422
DdeI	CTNAG	3 cut(s)	488, 537, 633
DpnI	GATC	2 cut(s)	60, 252
DpnII	GATC	2 cut(s)	58, 250
Ecl136II	GAGCTC	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	543
Eco53kI	GAGCTC	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	4 cut(s)	95, 197, 341, 577
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	4 cut(s)	91, 193, 337, 573
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	335, 399
FokI	GGATG	2 cut(s)	371, 518
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	2 cut(s)	335, 399
GlaI	GCGC	3 cut(s)	74, 152, 579
GluI	GCNGC	2 cut(s)	335, 399
HaeIII	GGCC	2 cut(s)	304, 607
HhaI	GCGC	3 cut(s)	75, 153, 580
Hin1II	CATG	4 cut(s)	95, 197, 341, 577
Hin6I	GCGC	3 cut(s)	73, 151, 578
HinP1I	GCGC	3 cut(s)	73, 151, 578
HincII	GTYRAC	1 cut(s)	521
HindII	GTYRAC	1 cut(s)	521
HphI	GGTGA	2 cut(s)	53, 273
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	7 cut(s)	27, 58, 310, 352, 538, 561, 587
Hpy188III	TCNNGA	2 cut(s)	248, 668
Hpy8I	GTNNAC	1 cut(s)	521
HpyAV	CCTTC	1 cut(s)	618
HpyCH4III	ACNGT	2 cut(s)	99, 565
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	5 cut(s)	160, 211, 239, 401, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	3 cut(s)	488, 537, 633
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	4 cut(s)	95, 197, 341, 577
HspAI	GCGC	3 cut(s)	73, 151, 578
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	58, 250
Lsp1109I	GCAGC	1 cut(s)	385
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	2 cut(s)	565, 659
MalI	GATC	2 cut(s)	60, 252
MboI	GATC	2 cut(s)	58, 250
MboII	GAAGA	4 cut(s)	20, 259, 478, 521
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	4 cut(s)	30, 186, 313, 652
MmeI	TCCRAC	2 cut(s)	584, 664
MnlI	CCTC	6 cut(s)	33, 93, 294, 355, 385, 673
MseI	TTAA	5 cut(s)	174, 323, 383, 555, 710
Mva1269I	GAATGC	2 cut(s)	153, 475
MwoI	GCNNNNNNNGC	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	2 cut(s)	58, 250
NlaIII	CATG	4 cut(s)	95, 197, 341, 577
NspI	RCATGY	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PctI	GAATGC	2 cut(s)	153, 475
PkrI	GCNGC	2 cut(s)	336, 400
Psp124BI	GAGCTC	1 cut(s)	543
PstI	CTGCAG	3 cut(s)	162, 213, 403
RsaI	GTAC	2 cut(s)	218, 423
RsaNI	GTAC	2 cut(s)	217, 422
SacI	GAGCTC	1 cut(s)	543
SaqAI	TTAA	5 cut(s)	174, 323, 383, 555, 710
SatI	GCNGC	2 cut(s)	335, 399
Sau3AI	GATC	2 cut(s)	58, 250
SduI	GDGCHC	1 cut(s)	543
SetI	ASST	9 cut(s)	85, 112, 286, 379, 400, 423, 543, 644, 684
SfcI	CTRYAG	3 cut(s)	158, 209, 399
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	4 cut(s)	30, 186, 313, 652
SsiI	CCGC	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	543
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	99, 565
TaiI	ACGT	1 cut(s)	379
TasI	AATT	4 cut(s)	30, 186, 313, 652
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	337
Tru1I	TTAA	5 cut(s)	174, 323, 383, 555, 710
Tru9I	TTAA	5 cut(s)	174, 323, 383, 555, 710
TseI	GCWGC	1 cut(s)	398
TspDTI	ATGAA	5 cut(s)	17, 29, 108, 522, 633
TspGWI	ACGGA	1 cut(s)	371
XapI	RAATTY	2 cut(s)	186, 652
XceI	RCATGY	1 cut(s)	341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.