Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0029130

Physical Location & Seq

Genomic Coordinates Forward (+)

22491162 .. 22494152

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G225500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGTTTCAACCTAGTCGGTGCATTCAGAGGGCTTTCTCTGCGCTCGGGCTCAAGCTCAAGCTCAATCTCATCATCGTCCTCCTTCTTCAGGGGCGATTTGGGTTCGTTGCAAGTGGGTCCCAAGCTGTCATTAGTGTCAAACCCCCAAAGATTGGACTTGAATATTCAAAACGCGCACAAGAAAGGAGCTGGGAGTACCAAGAACGGTGGCGATTCCCCAGGCCAAAGGCTTGGCATCAAGATTTTGGGTGACCAGGCTGCTAAGGCTGGCTCCATTATTGTACGCCAGCGTGGCACCAAGGCAAAATCCCCTATAGTGGAAGGATCCCACACACATAAAGAGAATAACCTCCTTACATATAAAGAAATGTGTGAAAGAAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0010033 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27

Protein Analysis

130

Amino Acids

13.61

Weight (kDa)

10.4

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029130)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G225500_v2.0.a1 Prupe.3G225500_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccII	CGCG	1 cut(s)	176
AclWI	GGATC	2 cut(s)	321, 334
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	2 cut(s)	199, 285
AfiI	CCNNNNNNNGG	3 cut(s)	90, 154, 319
AgsI	TTSAA	3 cut(s)	10, 163, 170
AjnI	CCWGG	2 cut(s)	220, 255
AluBI	AGCT	4 cut(s)	57, 63, 127, 191
AluI	AGCT	4 cut(s)	57, 63, 127, 191
AlwI	GGATC	2 cut(s)	321, 334
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	45, 178
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	247
BciT130I	CCWGG	2 cut(s)	222, 257
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	315
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	222, 257
Bme18I	GGWCC	1 cut(s)	119
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	5 cut(s)	120, 121, 274, 298, 328
BmrFI	CCNGG	2 cut(s)	222, 257
BmsI	GCATC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	37, 43
BsaJI	CCNNGG	2 cut(s)	220, 300
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 154, 319
BseBI	CCWGG	2 cut(s)	222, 257
BseDI	CCNNGG	2 cut(s)	220, 300
BseLI	CCNNNNNNNGG	3 cut(s)	90, 154, 319
BseXI	GCAGC	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	90, 154, 319
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	326
BspANI	GGCC	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	5 cut(s)	120, 121, 274, 298, 328
BspPI	GGATC	2 cut(s)	321, 334
BspT107I	GGYRCC	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	220, 300
BssMI	GATC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	222, 257
Bst4CI	ACNGT	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	271, 290
BstDEI	CTNAG	2 cut(s)	264, 387
BstEII	GGTNACC	1 cut(s)	251
BstENI	CCTNNNNNAGG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	2 cut(s)	45, 178
BstKTI	GATC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 266, 294
BstNI	CCWGG	2 cut(s)	222, 257
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	220, 255
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	271, 290
CfoI	GCGC	2 cut(s)	45, 178
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	198, 284
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviQI	GTAC	2 cut(s)	198, 284
DdeI	CTNAG	2 cut(s)	264, 387
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	220, 255
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	300
FaiI	YATR	4 cut(s)	317, 339, 361, 363
FalI	AAGNNNNNCTT	1 cut(s)	370
FaqI	GGGAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	2 cut(s)	44, 177
GluI	GCNGC	1 cut(s)	261
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	225
HhaI	GCGC	2 cut(s)	45, 178
Hin6I	GCGC	2 cut(s)	43, 176
HinP1I	GCGC	2 cut(s)	43, 176
HinfI	GANTC	1 cut(s)	215
HphI	GGTGA	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	94, 317
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	23, 112
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 266, 294
HpyF3I	CTNAG	2 cut(s)	264, 387
HspAI	GCGC	2 cut(s)	43, 176
KflI	GGGWCCC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	326
LmnI	GCTCC	2 cut(s)	188, 278
LpnPI	CCDG	8 cut(s)	76, 177, 207, 234, 242, 255, 269, 302
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	1 cut(s)	79
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	53
MnlI	CCTC	3 cut(s)	23, 91, 362
MspR9I	CCNGG	2 cut(s)	222, 257
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	2 cut(s)	222, 257
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	3 cut(s)	40, 266, 294
NdeII	GATC	1 cut(s)	326
NlaIV	GGNNCC	5 cut(s)	120, 121, 274, 298, 328
NmuCI	GTSAC	1 cut(s)	251
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	215
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	220, 255
PspEI	GGTNACC	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	2 cut(s)	220, 255
PspN4I	GGNNCC	5 cut(s)	120, 121, 274, 298, 328
PspPI	GGNCC	1 cut(s)	119
PspPPI	RGGWCCY	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	2 cut(s)	199, 285
RsaNI	GTAC	2 cut(s)	198, 284
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	326
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	222, 257
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	6 cut(s)	15, 59, 65, 129, 193, 354
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	52, 58
SmoI	CTYRAG	2 cut(s)	52, 58
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	220, 255
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	119
XagI	CCTNNNNNAGG	1 cut(s)	88
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.