Prupe.3G246400_v2.0.a1

Belongs to the adenylate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0022350
Physical Location & Seq
Reverse (-)
23761568 .. 23764428
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G246400.2_v2.0.a1.CDS.4

Sequence Viewer

Length: 765 bp
ATGCCACCGTTTACACACAGAAAGGACCCTGTGAATCTGAGAGCAAGCATTGCACTCTTCAGTCATCCCCCCCAGTGTAATCCCTGTCAGGATTTTATGGAGACCATGGCAAAAGATGGTGCAGCACAAGAGGCAACTGTGACTCCCAACAAGGATGTAAGTGAAGATAACCTTAAAGGGTACACAGTTATCTATGTTTTAGGTGGTCCAGGTAGCGGAAAGAGTACACAATGCGCCAAAATTGCTACATACTTTGGGTTTTGTCATCTGAGTGTTGGTGATCTTCTTGAAGCAGAAGTTGAGACTAGATCTGAATACGGTAAAATGATTGAGGACTGTAAGAAAGAAGGAAAGCTTGTTCCTTCCGATCTGGTTGTCAAGCTTCTGCAACAGGCAATGCAGAGGAGCCAAAACAAGAAATTTGTCATCGATGGCTTCCCACGGAATGAAGAAAATCGTGCTGCCGCTGAAAGCTTTATGAAAATTGAGCCAGATTTTGTATTGTTTCTTGACTGCTCGGAAGAGGAGATGAAAAGACGTCTTTTAAATAGAAACCAGGGAAGAGTTGATGATAATATTAGCACAATACAGAAGCGTCTTAAAGTCTACTTTGAATGCACTCTTCCTGTAATCAATTATTACAGCGCCGAGGGCAATGTTCGAAAGATTGATGCTGAAAGGTCTCCTGAGGAGGTATTTGAGGCAATCAAGGACGTATTCTTTGAGCTGAAAGAGAAGCATGGGGAGACCCGCATGACTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
ADK

Protein Analysis

255

Amino Acids

28.83

Weight (kDa)

5.58

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022350)

Species Orthologous Gene IDs
malus_domestica MD09G1078000.v1.1
prunus_persica Prupe.3G246400_v2.0.a1 Prupe.3G246400_v2.0.a1 Prupe.3G246400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 541
AccI GTMKAC 1 cut(s) 606
AciI CCGC 3 cut(s) 216, 465, 751
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 538
AfaI GTAC 2 cut(s) 182, 226
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 2 cut(s) 290, 614
AjnI CCWGG 2 cut(s) 208, 555
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
AluBI AGCT 4 cut(s) 355, 382, 474, 727
AluI AGCT 4 cut(s) 355, 382, 474, 727
Alw26I GTCTC 4 cut(s) 95, 296, 687, 740
ApeKI GCWGC 2 cut(s) 122, 461
ApoI RAATTY 1 cut(s) 419
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
AspLEI GCGC 2 cut(s) 236, 647
AspS9I GGNCC 2 cut(s) 25, 206
AsuHPI GGTGA 1 cut(s) 290
AsuII TTCGAA 1 cut(s) 661
AvaII GGWCC 2 cut(s) 25, 206
AxyI CCTNAGG 1 cut(s) 687
BbvI GCAGC 2 cut(s) 134, 448
BccI CCATC 2 cut(s) 110, 425
BciT130I CCWGG 2 cut(s) 210, 557
BcoDI GTCTC 4 cut(s) 95, 296, 687, 740
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 761
BfoI RGCGCY 1 cut(s) 648
BglII AGATCT 1 cut(s) 308
BisI GCNGC 3 cut(s) 123, 462, 465
BlsI GCNGC 3 cut(s) 124, 463, 466
Bme1390I CCNGG 2 cut(s) 210, 557
Bme18I GGWCC 2 cut(s) 25, 206
BmgT120I GGNCC 2 cut(s) 25, 206
BmiI GGNNCC 2 cut(s) 27, 407
BmrFI CCNGG 2 cut(s) 210, 557
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 661
BmuI ACTGGG 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 661
Bsa29I ATCGAT 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 538
BsaI GGTCTC 3 cut(s) 95, 687, 740
BsaJI CCNNGG 4 cut(s) 105, 440, 556, 648
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 73
Bse21I CCTNAGG 1 cut(s) 687
Bse3DI GCAATG 3 cut(s) 48, 402, 661
BseBI CCWGG 2 cut(s) 210, 557
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 4 cut(s) 105, 440, 556, 648
BseGI GGATG 2 cut(s) 64, 160
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMI GCAATG 3 cut(s) 48, 402, 661
BseMII CTCAG 3 cut(s) 29, 260, 678
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 3 cut(s) 418, 539, 704
BseXI GCAGC 2 cut(s) 134, 448
BsgI GTGCAG 1 cut(s) 141
BshVI ATCGAT 1 cut(s) 429
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 4 cut(s) 95, 296, 687, 740
BsmI GAATGC 1 cut(s) 620
Bso31I GGTCTC 3 cut(s) 95, 687, 740
Bsp119I TTCGAA 1 cut(s) 661
Bsp143I GATC 3 cut(s) 280, 308, 367
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 3 cut(s) 216, 465, 751
BspCNI CTCAG 3 cut(s) 30, 261, 679
BspDI ATCGAT 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 27, 407
BspT104I TTCGAA 1 cut(s) 661
BspTNI GGTCTC 3 cut(s) 95, 687, 740
BsrDI GCAATG 3 cut(s) 48, 402, 661
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 4 cut(s) 105, 440, 556, 648
BssMI GATC 3 cut(s) 280, 308, 367
BssNI GRCGYC 1 cut(s) 538
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 210, 557
Bst4CI ACNGT 5 cut(s) 9, 139, 187, 320, 338
Bst6I CTCTTC 4 cut(s) 62, 516, 556, 627
BstACI GRCGYC 1 cut(s) 538
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 661
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 3 cut(s) 38, 269, 687
BstDSI CCRYGG 2 cut(s) 105, 440
BstF5I GGATG 2 cut(s) 64, 160
BstH2I RGCGCY 1 cut(s) 648
BstHHI GCGC 2 cut(s) 236, 647
BstKTI GATC 3 cut(s) 283, 311, 370
BstMAI GTCTC 4 cut(s) 95, 296, 687, 740
BstMBI GATC 3 cut(s) 280, 308, 367
BstMWI GCNNNNNNNGC 4 cut(s) 50, 131, 242, 651
BstNI CCWGG 2 cut(s) 210, 557
BstSCI CCNGG 2 cut(s) 208, 555
BstSFI CTRYAG 1 cut(s) 761
BstV1I GCAGC 2 cut(s) 134, 448
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 429
Bsu36I CCTNAGG 1 cut(s) 687
BsuTUI ATCGAT 1 cut(s) 429
BtgI CCRYGG 2 cut(s) 105, 440
BtsCI GGATG 2 cut(s) 64, 160
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 46
CfoI GCGC 2 cut(s) 236, 647
Cfr13I GGNCC 2 cut(s) 25, 206
ClaI ATCGAT 1 cut(s) 429
CseI GACGC 1 cut(s) 584
Csp6I GTAC 2 cut(s) 181, 225
CviAII CATG 3 cut(s) 106, 740, 754
CviJI RGCY 7 cut(s) 355, 382, 408, 435, 474, 490, 727
CviKI_1 RGCY 7 cut(s) 355, 382, 408, 435, 474, 490, 727
CviQI GTAC 2 cut(s) 181, 225
DdeI CTNAG 3 cut(s) 38, 269, 687
DpnI GATC 3 cut(s) 282, 310, 369
DpnII GATC 3 cut(s) 280, 308, 367
DraI TTTAAA 1 cut(s) 546
Eam1104I CTCTTC 4 cut(s) 62, 516, 556, 627
EarI CTCTTC 4 cut(s) 62, 516, 556, 627
Eco130I CCWWGG 1 cut(s) 105
Eco31I GGTCTC 3 cut(s) 95, 687, 740
Eco47I GGWCC 2 cut(s) 25, 206
Eco57I CTGAAG 1 cut(s) 43
Eco81I CCTNAGG 1 cut(s) 687
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 208, 555
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 3 cut(s) 109, 743, 757
FaiI YATR 7 cut(s) 98, 107, 195, 250, 479, 741, 755
FalI AAGNNNNNCTT 4 cut(s) 156, 188, 339, 371
FatI CATG 3 cut(s) 105, 739, 753
FauI CCCGC 1 cut(s) 758
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 3 cut(s) 123, 462, 465
FokI GGATG 2 cut(s) 51, 167
Fsp4HI GCNGC 3 cut(s) 123, 462, 465
FspBI CTAG 1 cut(s) 306
GlaI GCGC 2 cut(s) 235, 646
GluI GCNGC 3 cut(s) 123, 462, 465
HaeII RGCGCY 1 cut(s) 648
HgaI GACGC 1 cut(s) 584
HhaI GCGC 2 cut(s) 236, 647
Hin1I GRCGYC 1 cut(s) 538
Hin1II CATG 3 cut(s) 109, 743, 757
Hin6I GCGC 2 cut(s) 234, 645
HinP1I GCGC 2 cut(s) 234, 645
HindIII AAGCTT 3 cut(s) 353, 380, 472
HinfI GANTC 3 cut(s) 34, 142, 757
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 4 cut(s) 12, 183, 227, 607
Hpy188I TCNGA 5 cut(s) 39, 270, 313, 367, 520
Hpy188III TCNNGA 4 cut(s) 89, 287, 509, 686
Hpy8I GTNNAC 4 cut(s) 12, 183, 227, 607
HpyAV CCTTC 2 cut(s) 341, 372
HpyCH4III ACNGT 5 cut(s) 9, 139, 187, 320, 338
HpyCH4IV ACGT 2 cut(s) 538, 714
HpyCH4V TGCA 5 cut(s) 53, 122, 388, 400, 618
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 131, 242, 651
HpyF3I CTNAG 3 cut(s) 38, 269, 687
HpySE526I ACGT 2 cut(s) 538, 714
Hsp92I GRCGYC 1 cut(s) 538
Hsp92II CATG 3 cut(s) 109, 743, 757
HspAI GCGC 2 cut(s) 234, 645
Kzo9I GATC 3 cut(s) 280, 308, 367
LmnI GCTCC 1 cut(s) 405
Lsp1109I GCAGC 2 cut(s) 134, 448
LweI GCATC 1 cut(s) 661
MaeI CTAG 1 cut(s) 306
MaeII ACGT 2 cut(s) 538, 714
MaeIII GTNAC 1 cut(s) 139
MalI GATC 3 cut(s) 282, 310, 369
MboI GATC 3 cut(s) 280, 308, 367
MboII GAAGA 7 cut(s) 49, 176, 275, 461, 533, 573, 614
MflI RGATCY 1 cut(s) 308
MluCI AATT 4 cut(s) 240, 419, 483, 634
MlyI GAGTC 2 cut(s) 136, 751
MnlI CCTC 8 cut(s) 124, 325, 396, 517, 643, 682, 685, 694
MseI TTAA 3 cut(s) 174, 545, 600
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 210, 557
Mva1269I GAATGC 1 cut(s) 620
MvaI CCWGG 2 cut(s) 210, 557
MwoI GCNNNNNNNGC 4 cut(s) 50, 131, 242, 651
NcoI CCATGG 1 cut(s) 105
NdeII GATC 3 cut(s) 280, 308, 367
NlaIII CATG 3 cut(s) 109, 743, 757
NlaIV GGNNCC 2 cut(s) 27, 407
NmeAIII GCCGAG 1 cut(s) 673
NmuCI GTSAC 1 cut(s) 139
NspV TTCGAA 1 cut(s) 661
PctI GAATGC 1 cut(s) 620
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 3 cut(s) 124, 463, 466
PleI GAGTC 2 cut(s) 136, 751
PpsI GAGTC 2 cut(s) 136, 751
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 208, 555
PspGI CCWGG 2 cut(s) 208, 555
PspN4I GGNNCC 2 cut(s) 27, 407
PspPI GGNCC 2 cut(s) 25, 206
PspPPI RGGWCCY 1 cut(s) 25
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 2 cut(s) 182, 226
RsaNI GTAC 2 cut(s) 181, 225
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 3 cut(s) 174, 545, 600
SatI GCNGC 3 cut(s) 123, 462, 465
Sau3AI GATC 3 cut(s) 280, 308, 367
Sau96I GGNCC 2 cut(s) 25, 206
SchI GAGTC 2 cut(s) 136, 751
ScrFI CCNGG 2 cut(s) 210, 557
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 1 cut(s) 761
SfuI TTCGAA 1 cut(s) 661
SinI GGWCC 2 cut(s) 25, 206
SmiMI CAYNNNNRTG 1 cut(s) 270
Sse9I AATT 4 cut(s) 240, 419, 483, 634
SsiI CCGC 3 cut(s) 216, 465, 751
SspI AATATT 1 cut(s) 577
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 208, 555
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 5 cut(s) 9, 139, 187, 320, 338
TaiI ACGT 2 cut(s) 541, 717
TaqI TCGA 2 cut(s) 429, 661
TasI AATT 4 cut(s) 240, 419, 483, 634
TatI WGTACW 1 cut(s) 224
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 3 cut(s) 174, 545, 600
Tru9I TTAA 3 cut(s) 174, 545, 600
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 2 cut(s) 122, 461
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 3 cut(s) 462, 494, 545
TspGWI ACGGA 1 cut(s) 457
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 25, 206
XapI RAATTY 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 606
XspI CTAG 1 cut(s) 306
ZraI GACGTC 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.