Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0024575

Physical Location & Seq

Genomic Coordinates Reverse (-)

24783338 .. 24785431

Gene Structure 2094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G262400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCATTAGACATGAGAGATGGAAGAGCAAGAACTACGGTGAATCGACATGCCGTGATTGACAAACTTGACCTCTATAAAGAAGACATAGCTGTTAGATTTAAGGAATTTCAAGCAGCAGTCAAGACAACACTATCAACGGAACAAATACGTAAATTTTTAGAAGCTAATGGCCAAGACTTATCTGGCTCTAATGATGCTCTTCTCCAAAGATGCCAGGACTTGTTGTTCTATGGACCATTAGGGAAATGCCCAATTTGCAATGGCAATAATTTGGAGTTCACTGGATATTTTTGTGAGTGTGGCACTTGCATCTATCGCTCAAGGTATCCACCAAGGAAAAGAGGGCCCATCAAGTACCCTATTAGCATCATCAAGCAAATCAACCCTCATTTGAACCCTCGTTTCGACCCTCCTTATGTGGAAGATCAAGGGTTCTTCGGCCGTTTATGGCCTGAATTTATTCCCCAACACGATCCATATCGCCCGGCGGGTAACCGAGTGGAAATGACACTAACTACATATCAAGACGAGGTGGAGATCAATGGCCGGAGGATGAAGAAGAGAACTTTTTGGATCTATGTAATGGTAATCGTGCTAACGGCTTTCTTTATGGTCAAACTTTGGTCCAAATTGTCCACAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003950 GO:0006464 GO:0006471 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070212 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

216

Amino Acids

25.09

Weight (kDa)

9.11

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024575)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G262400_v2.0.a1 Prupe.3G262700_v2.0.a1 Prupe.3G262700_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	2 cut(s)	470, 584
AcoI	YGGCCR	3 cut(s)	172, 442, 547
AcsI	RAATTY	3 cut(s)	107, 155, 458
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	113, 397
AjnI	CCWGG	1 cut(s)	216
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	2 cut(s)	92, 167
AluI	AGCT	2 cut(s)	92, 167
AlwI	GGATC	2 cut(s)	470, 584
AoxI	GGCC	5 cut(s)	172, 347, 442, 452, 547
ApaI	GGGCCC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	3 cut(s)	107, 155, 458
Asp700I	GAANNNNTTC	1 cut(s)	462
AspS9I	GGNCC	4 cut(s)	236, 347, 348, 627
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	2 cut(s)	236, 627
BaeGI	GKGCMC	1 cut(s)	351
BalI	TGGCCA	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	2 cut(s)	14, 359
BceAI	ACGGC	3 cut(s)	38, 429, 618
BciT130I	CCWGG	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	218, 488
Bme18I	GGWCC	2 cut(s)	236, 627
BmgT120I	GGNCC	4 cut(s)	236, 347, 348, 627
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	218, 488
BmsI	GCATC	4 cut(s)	187, 203, 321, 378
BpiI	GAAGAC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	268
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	561
BseJI	GATNNNNATC	1 cut(s)	480
BseMI	GCAATG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	351
BseX3I	CGGCCG	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	5 cut(s)	174, 349, 444, 454, 549
BsiEI	CGRYCG	1 cut(s)	445
BsiSI	CCGG	2 cut(s)	488, 550
BsnI	GGCC	5 cut(s)	174, 349, 444, 454, 549
Bsp120I	GGGCCC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	427, 475, 540, 576
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	5 cut(s)	174, 349, 444, 454, 549
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	470, 584
BspQI	GCTCTTC	2 cut(s)	19, 207
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	4 cut(s)	427, 475, 540, 576
BssT1I	CCWWGG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	3 cut(s)	19, 207, 557
BstBAI	YACGTR	1 cut(s)	152
BstEII	GGTNACC	1 cut(s)	494
BstF5I	GGATG	1 cut(s)	561
BstKTI	GATC	4 cut(s)	430, 478, 543, 579
BstMBI	GATC	4 cut(s)	427, 475, 540, 576
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 318
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	53
BstPI	GGTNACC	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	216, 486
BstSLI	GKGCMC	1 cut(s)	351
BstSNI	TACGTA	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	576
BstZI	CGGCCG	1 cut(s)	442
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	5 cut(s)	174, 349, 444, 454, 549
BtsCI	GGATG	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	282
Cfr13I	GGNCC	4 cut(s)	236, 347, 348, 627
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	13, 50
CviJI	RGCY	9 cut(s)	92, 167, 174, 189, 349, 444, 454, 549, 605
CviKI_1	RGCY	9 cut(s)	92, 167, 174, 189, 349, 444, 454, 549, 605
CviQI	GTAC	1 cut(s)	358
DpnI	GATC	4 cut(s)	429, 477, 542, 578
DpnII	GATC	4 cut(s)	427, 475, 540, 576
EaeI	YGGCCR	3 cut(s)	172, 442, 547
EagI	CGGCCG	1 cut(s)	442
Eam1104I	CTCTTC	3 cut(s)	19, 207, 557
EarI	CTCTTC	3 cut(s)	19, 207, 557
EclXI	CGGCCG	1 cut(s)	442
Eco105I	TACGTA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	2 cut(s)	236, 627
Eco52I	CGGCCG	1 cut(s)	442
Eco91I	GGTNACC	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	347
EcoO65I	GGTNACC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	2 cut(s)	16, 53
FatI	CATG	2 cut(s)	12, 49
FauI	CCCGC	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	174, 349, 444, 454, 549
HapII	CCGG	2 cut(s)	488, 550
Hin1II	CATG	2 cut(s)	16, 53
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	488, 550
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	282, 639
Hpy188III	TCNNGA	2 cut(s)	124, 527
Hpy8I	GTNNAC	2 cut(s)	282, 639
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	2 cut(s)	261, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 318
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	16, 53
Kzo9I	GATC	4 cut(s)	427, 475, 540, 576
LguI	GCTCTTC	2 cut(s)	19, 207
LpnPI	CCDG	7 cut(s)	171, 203, 230, 270, 468, 501, 563
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	4 cut(s)	187, 203, 321, 378
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	4 cut(s)	429, 477, 542, 578
MboI	GATC	4 cut(s)	427, 475, 540, 576
MboII	GAAGA	7 cut(s)	36, 95, 194, 430, 437, 571, 574
MflI	RGATCY	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	6 cut(s)	107, 155, 255, 271, 458, 632
MluNI	TGGCCA	1 cut(s)	174
MnlI	CCTC	7 cut(s)	83, 338, 399, 411, 423, 526, 546
Mox20I	TGGCCA	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	174
MspI	CCGG	2 cut(s)	488, 550
MspR9I	CCNGG	2 cut(s)	218, 488
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	258, 318
NciI	CCSGG	1 cut(s)	488
NdeII	GATC	4 cut(s)	427, 475, 540, 576
NlaIII	CATG	2 cut(s)	16, 53
NlaIV	GGNNCC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	53
PciSI	GCTCTTC	2 cut(s)	19, 207
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	216
PspEI	GGTNACC	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	349
PspOMI	GGGCCC	1 cut(s)	347
PspPI	GGNCC	4 cut(s)	236, 347, 348, 627
PsuI	RGATCY	1 cut(s)	576
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SapI	GCTCTTC	2 cut(s)	19, 207
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	4 cut(s)	427, 475, 540, 576
Sau96I	GGNCC	4 cut(s)	236, 347, 348, 627
ScrFI	CCNGG	2 cut(s)	218, 488
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	6 cut(s)	75, 94, 154, 169, 329, 537
SfaNI	GCATC	4 cut(s)	187, 203, 321, 378
SinI	GGWCC	2 cut(s)	236, 627
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SnaBI	TACGTA	1 cut(s)	152
Sse9I	AATT	6 cut(s)	107, 155, 255, 271, 458, 632
SsiI	CCGC	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	216, 486
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	2 cut(s)	46, 408
TasI	AATT	6 cut(s)	107, 155, 255, 271, 458, 632
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	572
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	236, 627
XapI	RAATTY	3 cut(s)	107, 155, 458
XceI	RCATGY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.