Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0024527

Physical Location & Seq

Genomic Coordinates Reverse (-)

25304464 .. 25307536

Gene Structure 3073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G273400.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCACCAATGGGCTGTCCGTTGGAATGAGGTAACATATCAACCTGATGAAACTTCTTTCTGCAGCTATTACATGGGTCTTTTCTTGAACCCTCTTCATGTAAAGGAATTGAGCCAGACTTCCGCTGGTGGATTTTTGAGCTCCATTACTCAGGGCCCCAATGAAATAGCATCTTCAGTACGTGCAACTATTAGGAGTCAGAGCAACAAGTCCAAGCATGGAAATGAAACCTCTGTTGACAAGGGAAATAGTGGTAGTAATGAAAACCGTAATGATACTGTAAATGTGGATTTGCAGCACCAAGATGGTGATGTAGATAGGAAATTGGATTCTAAGCCTAGTTTCAAAAGGAGCTCGTCAAGCAATAAGAATGATGAAACAAAAATCCTATTTTTACTTTTTATCAACAAGAAGAGTGGAGCTCAGTGTGGGAATTCACTGGGGCAACGATTGAATATTCTTCGCAATCCTGTTCAGTCAGTAATTAGAAAAAAAGGCAACAAAAAAAAATTTGTCTGGACTCGAAGGCTTGCACAAGGGCAGTCAATTAAGATACAGCTCTTTGCTGCATTCCCTGTTCGGGTTGATGGGGAGCCTTGTACATTGGCTATATCCCATCATGGCCAGGTCTCTCTCTCTCTCTCTCTCTGGGCTGAGGAGCCCCTTGGTCATGCAGCTGCCATTATCACTGATGTTCTTGAGAATGCCGAGCCCCTTGGTCATGCAGCTGCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat

Protein Analysis

246

Amino Acids

27.03

Weight (kDa)

9.26

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024527)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G273400_v2.0.a1 Prupe.3G273400_v2.0.a1 Prupe.8G168800_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	622
AcsI	RAATTY	2 cut(s)	433, 509
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	2 cut(s)	180, 601
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	3 cut(s)	88, 346, 454
AjnI	CCWGG	1 cut(s)	624
AluBI	AGCT	7 cut(s)	66, 141, 354, 422, 559, 677, 728
AluI	AGCT	7 cut(s)	66, 141, 354, 422, 559, 677, 728
Alw21I	GWGCWC	3 cut(s)	143, 356, 424
Alw26I	GTCTC	1 cut(s)	634
AoxI	GGCC	2 cut(s)	154, 622
ApaI	GGGCCC	1 cut(s)	158
ApeKI	GCWGC	7 cut(s)	63, 295, 566, 674, 677, 725, 728
ApoI	RAATTY	2 cut(s)	433, 509
AspS9I	GGNCC	2 cut(s)	154, 155
AsuHPI	GGTGA	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	624
BanII	GRGCYC	6 cut(s)	143, 158, 356, 424, 663, 714
Bbv12I	GWGCWC	3 cut(s)	143, 356, 424
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	6 cut(s)	75, 307, 553, 664, 686, 715
BccI	CCATC	3 cut(s)	299, 581, 624
BciT130I	CCWGG	1 cut(s)	626
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	7 cut(s)	64, 296, 567, 675, 678, 726, 729
BlsI	GCNGC	7 cut(s)	65, 297, 568, 676, 679, 727, 730
Bme1390I	CCNGG	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	154, 155
BmiI	GGNNCC	4 cut(s)	156, 157, 594, 660
BmrFI	CCNGG	1 cut(s)	626
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	449
BplI	GAGNNNNNCTC	2 cut(s)	406, 438
Bpu10I	CCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	719
BsaAI	YACGTR	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	2 cut(s)	664, 715
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	626
BseDI	CCNNGG	2 cut(s)	664, 715
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMII	CTCAG	3 cut(s)	164, 437, 645
BseNI	ACTGG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	671
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	6 cut(s)	75, 307, 553, 664, 686, 715
BshFI	GGCC	2 cut(s)	156, 624
BsiHKAI	GWGCWC	3 cut(s)	143, 356, 424
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	1 cut(s)	634
BsmI	GAATGC	2 cut(s)	569, 709
BsnI	GGCC	2 cut(s)	156, 624
Bso31I	GGTCTC	1 cut(s)	634
Bsp120I	GGGCCC	1 cut(s)	154
Bsp1286I	GDGCHC	6 cut(s)	143, 158, 356, 424, 663, 714
Bsp1407I	TGTACA	1 cut(s)	599
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	156, 624
BspCNI	CTCAG	3 cut(s)	163, 436, 646
BspLI	GGNNCC	4 cut(s)	156, 157, 594, 660
BspMAI	CTGCAG	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	634
BsrGI	TGTACA	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	664, 715
BssT1I	CCWWGG	2 cut(s)	664, 715
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	2 cut(s)	269, 280
Bst6I	CTCTTC	2 cut(s)	99, 407
BstAUI	TGTACA	1 cut(s)	599
BstBAI	YACGTR	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	4 cut(s)	150, 333, 423, 654
BstMAI	GTCTC	1 cut(s)	634
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstNI	CCWGG	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	624
BstSFI	CTRYAG	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	6 cut(s)	75, 307, 553, 664, 686, 715
BsuRI	GGCC	2 cut(s)	156, 624
BtsIMutI	CAGTG	3 cut(s)	431, 437, 687
Cac8I	GCNNGC	1 cut(s)	531
Cfr13I	GGNCC	2 cut(s)	154, 155
Csp6I	GTAC	2 cut(s)	179, 600
CspCI	CAANNNNNGTGG	2 cut(s)	397, 432
CviAII	CATG	7 cut(s)	73, 98, 218, 620, 671, 722, 733
CviQI	GTAC	2 cut(s)	179, 600
DdeI	CTNAG	4 cut(s)	150, 333, 423, 654
EaeI	YGGCCR	1 cut(s)	622
Eam1104I	CTCTTC	2 cut(s)	99, 407
EarI	CTCTTC	2 cut(s)	99, 407
Ecl136II	GAGCTC	3 cut(s)	141, 354, 422
Eco130I	CCWWGG	2 cut(s)	664, 715
Eco24I	GRGCYC	6 cut(s)	143, 158, 356, 424, 663, 714
Eco31I	GGTCTC	1 cut(s)	634
Eco53kI	GAGCTC	3 cut(s)	141, 354, 422
Eco57I	CTGAAG	1 cut(s)	159
EcoICRI	GAGCTC	3 cut(s)	141, 354, 422
EcoO109I	RGGNCCY	2 cut(s)	154, 155
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	624
EcoT14I	CCWWGG	2 cut(s)	664, 715
EcoT38I	GRGCYC	6 cut(s)	143, 158, 356, 424, 663, 714
ErhI	CCWWGG	2 cut(s)	664, 715
FaeI	CATG	7 cut(s)	76, 101, 221, 623, 674, 725, 736
FaiI	YATR	9 cut(s)	37, 74, 99, 219, 611, 621, 672, 723, 734
FatI	CATG	7 cut(s)	72, 97, 217, 619, 670, 721, 732
Fnu4HI	GCNGC	7 cut(s)	64, 296, 567, 675, 678, 726, 729
FriOI	GRGCYC	6 cut(s)	143, 158, 356, 424, 663, 714
Fsp4HI	GCNGC	7 cut(s)	64, 296, 567, 675, 678, 726, 729
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	7 cut(s)	64, 296, 567, 675, 678, 726, 729
HaeIII	GGCC	2 cut(s)	156, 624
Hin1II	CATG	7 cut(s)	76, 101, 221, 623, 674, 725, 736
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	196, 329, 520
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	3 cut(s)	85, 517, 698
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	2 cut(s)	269, 280
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	8 cut(s)	4, 63, 185, 295, 533, 569, 674, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpyF3I	CTNAG	4 cut(s)	150, 333, 423, 654
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	7 cut(s)	76, 101, 221, 623, 674, 725, 736
LmnI	GCTCC	5 cut(s)	146, 351, 419, 592, 658
Lsp1109I	GCAGC	6 cut(s)	75, 307, 553, 664, 686, 715
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	86, 165, 424, 452
MhlI	GDGCHC	6 cut(s)	143, 158, 356, 424, 663, 714
MlsI	TGGCCA	1 cut(s)	624
MluCI	AATT	6 cut(s)	107, 323, 433, 483, 509, 546
MluNI	TGGCCA	1 cut(s)	624
MlyI	GAGTC	2 cut(s)	205, 514
MnlI	CCTC	4 cut(s)	22, 102, 241, 649
Mox20I	TGGCCA	1 cut(s)	624
MscI	TGGCCA	1 cut(s)	624
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	2 cut(s)	222, 303
Msp20I	TGGCCA	1 cut(s)	624
MspA1I	CMGCKG	3 cut(s)	125, 677, 728
MspR9I	CCNGG	1 cut(s)	626
Mva1269I	GAATGC	2 cut(s)	569, 709
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	1 cut(s)	360
NlaIII	CATG	7 cut(s)	76, 101, 221, 623, 674, 725, 736
NlaIV	GGNNCC	4 cut(s)	156, 157, 594, 660
NmeAIII	GCCGAG	1 cut(s)	733
PctI	GAATGC	2 cut(s)	569, 709
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	7 cut(s)	65, 297, 568, 676, 679, 727, 730
PleI	GAGTC	2 cut(s)	204, 514
PpsI	GAGTC	2 cut(s)	204, 514
Ppu21I	YACGTR	1 cut(s)	182
Psp124BI	GAGCTC	3 cut(s)	143, 356, 424
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	4 cut(s)	156, 157, 594, 660
PspOMI	GGGCCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	154, 155
PstI	CTGCAG	1 cut(s)	65
PvuII	CAGCTG	2 cut(s)	677, 728
RsaI	GTAC	2 cut(s)	180, 601
RsaNI	GTAC	2 cut(s)	179, 600
RseI	CAYNNNNRTG	2 cut(s)	222, 303
SacI	GAGCTC	3 cut(s)	143, 356, 424
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	7 cut(s)	64, 296, 567, 675, 678, 726, 729
Sau96I	GGNCC	2 cut(s)	154, 155
SchI	GAGTC	2 cut(s)	205, 514
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	6 cut(s)	143, 158, 356, 424, 663, 714
SfaNI	GCATC	1 cut(s)	179
SfcI	CTRYAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	222, 303
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	6 cut(s)	107, 323, 433, 483, 509, 546
SsiI	CCGC	1 cut(s)	123
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	3 cut(s)	143, 356, 424
StyD4I	CCNGG	1 cut(s)	624
StyI	CCWWGG	2 cut(s)	664, 715
TaaI	ACNGT	2 cut(s)	269, 280
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	523
TasI	AATT	6 cut(s)	107, 323, 433, 483, 509, 546
TatI	WGTACW	1 cut(s)	599
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	3 cut(s)	431, 444, 694
TseI	GCWGC	7 cut(s)	63, 295, 566, 674, 677, 725, 728
TspDTI	ATGAA	6 cut(s)	63, 86, 177, 240, 276, 390
TspGWI	ACGGA	1 cut(s)	8
TspRI	CASTG	3 cut(s)	431, 444, 694
XapI	RAATTY	2 cut(s)	433, 509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.