Prupe.3G307000_v2.0.a1

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0029107
Physical Location & Seq
Reverse (-)
26810615 .. 26812279
1665 bp
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UTR
Exon/CDS
Intron
Prupe.3G307000.1

Sequence Viewer

Length: 432 bp
ATGAACAAAGATTTTGAGTTTTCGAGTAGAGTTACGCCGAAACGACTACTGACTGGGACGCGCAAATTGCAATCGAGGGGTGTTACTGTCTCAATGTATAAAAACCCCTGTTTCCTCCCAAATCAGCTCCTAACTCAAATTCTTGTTCGTGTTCTTCTCTCTGAGGCTCGGACCAAAACAAAAATAAAATCTTGGGAATTCGTCGGAAGTAAAAAAAAAAAAATGGACGCCATTGATTCAGTGTTTGATCCGCTAAGAGAATTCTCCAAGGACAGCGTTCGCCTCGTCAAGCGCTGTCATAAACCCGACCGCAAAGAGTTCACAAAGGTGGCGGTCCGTACGGCTATCGGGTTCGTGGTCATGGGGTTCGTTGGCTTCTTCGTGAAGCTCATCTTCATCCCGATCAACAACATCATCGTCGGATCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
SecE

Protein Analysis

144

Amino Acids

16.34

Weight (kDa)

10.51

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029107)

Species Orthologous Gene IDs
prunus_persica Prupe.3G307000_v2.0.a1 Prupe.3G307000_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 3 cut(s) 251, 310, 332
AclWI GGATC 2 cut(s) 242, 430
AcsI RAATTY 3 cut(s) 138, 197, 260
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 1 cut(s) 340
AfeI AGCGCT 1 cut(s) 293
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 2 cut(s) 127, 388
AluI AGCT 2 cut(s) 127, 388
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 2 cut(s) 242, 430
Aor51HI AGCGCT 1 cut(s) 293
ApoI RAATTY 3 cut(s) 138, 197, 260
AspLEI GCGC 2 cut(s) 63, 294
AspS9I GGNCC 2 cut(s) 171, 334
AvaII GGWCC 2 cut(s) 171, 334
BceAI ACGGC 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 94
BfoI RGCGCY 1 cut(s) 295
Bme18I GGWCC 2 cut(s) 171, 334
BmgT120I GGNCC 2 cut(s) 171, 334
BmrI ACTGGG 1 cut(s) 63
BmuI ACTGGG 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 396
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 310
BsiEI CGRYCG 1 cut(s) 310
BsiWI CGTACG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 247, 402, 422
BspACI CCGC 3 cut(s) 251, 310, 332
BspCNI CTCAG 1 cut(s) 154
BspFNI CGCG 1 cut(s) 61
BspPI GGATC 2 cut(s) 242, 430
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 3 cut(s) 247, 402, 422
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 162, 254
BstF5I GGATG 1 cut(s) 396
BstFNI CGCG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 2 cut(s) 63, 294
BstKTI GATC 3 cut(s) 250, 405, 425
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 3 cut(s) 247, 402, 422
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstUI CGCG 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BtsCI GGATG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 246
CfoI GCGC 2 cut(s) 63, 294
Cfr13I GGNCC 2 cut(s) 171, 334
CpoI CGGWCCG 1 cut(s) 334
CseI GACGC 2 cut(s) 67, 236
Csp6I GTAC 1 cut(s) 339
CspI CGGWCCG 1 cut(s) 334
CviAII CATG 1 cut(s) 361
CviJI RGCY 5 cut(s) 127, 167, 344, 375, 388
CviKI_1 RGCY 5 cut(s) 127, 167, 344, 375, 388
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 2 cut(s) 162, 254
DpnI GATC 3 cut(s) 249, 404, 424
DpnII GATC 3 cut(s) 247, 402, 422
Eco130I CCWWGG 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 171, 334
Eco47III AGCGCT 1 cut(s) 293
EcoRI GAATTC 2 cut(s) 197, 260
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 364
FaiI YATR 3 cut(s) 99, 300, 362
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 70
FatI CATG 1 cut(s) 360
FokI GGATG 1 cut(s) 383
GlaI GCGC 2 cut(s) 62, 293
HaeII RGCGCY 1 cut(s) 295
HgaI GACGC 2 cut(s) 67, 236
HhaI GCGC 2 cut(s) 63, 294
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 1 cut(s) 364
Hin6I GCGC 2 cut(s) 61, 292
HinP1I GCGC 2 cut(s) 61, 292
HinfI GANTC 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 4 cut(s) 163, 171, 206, 422
Hpy188III TCNNGA 2 cut(s) 382, 400
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 2 cut(s) 206, 422
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 2 cut(s) 162, 254
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 1 cut(s) 364
HspAI GCGC 2 cut(s) 61, 292
Kzo9I GATC 3 cut(s) 247, 402, 422
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 3 cut(s) 39, 121, 411
MaeIII GTNAC 2 cut(s) 31, 82
MalI GATC 3 cut(s) 249, 404, 424
MboI GATC 3 cut(s) 247, 402, 422
MboII GAAGA 3 cut(s) 146, 370, 385
MflI RGATCY 1 cut(s) 422
MluCI AATT 4 cut(s) 65, 138, 197, 260
MmeI TCCRAC 2 cut(s) 184, 400
MnlI CCTC 4 cut(s) 69, 125, 157, 293
MseI TTAA 1 cut(s) 430
MslI CAYNNNNRTG 1 cut(s) 326
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 3 cut(s) 247, 402, 422
NlaIII CATG 1 cut(s) 364
OliI CACNNNNGTG 1 cut(s) 326
PfeI GAWTC 1 cut(s) 236
Pfl23II CGTACG 1 cut(s) 338
PspLI CGTACG 1 cut(s) 338
PspPI GGNCC 2 cut(s) 171, 334
PsuI RGATCY 1 cut(s) 422
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 326
Rsr2I CGGWCCG 1 cut(s) 334
RsrII CGGWCCG 1 cut(s) 334
SaqAI TTAA 1 cut(s) 430
Sau3AI GATC 3 cut(s) 247, 402, 422
Sau96I GGNCC 2 cut(s) 171, 334
SetI ASST 3 cut(s) 129, 330, 390
SinI GGWCC 2 cut(s) 171, 334
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 4 cut(s) 65, 138, 197, 260
SsiI CCGC 3 cut(s) 251, 310, 332
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 2 cut(s) 23, 74
TasI AATT 4 cut(s) 65, 138, 197, 260
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 430
Tru9I TTAA 1 cut(s) 430
TscAI CASTG 1 cut(s) 246
TspDTI ATGAA 2 cut(s) 17, 385
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 2 cut(s) 171, 334
XapI RAATTY 3 cut(s) 138, 197, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.