Prupe.4G019900_v2.0.a1

cellular response to nitrogen starvation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0021231
Physical Location & Seq
Forward (+)
922157 .. 924311
2155 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G019900.1

Sequence Viewer

Length: 594 bp
ATGGCAGAAAGCTCTCTCAAGAACGAATGTTGTCAGGAAAGGATGCAAGCAGAAGAGAATAATTCAGATCCTGCACCAATGGTTGTGAAGAATGCTGCCGCTGCTGCTTCCCTAAGTGTCATTCCTGACATTAATAAGATGAAGAAGAAGAAGAAGAGGAAACCGACAGTAGTAATATCTCCGGTTAGAGCTTTACTTTTAGACACTTGGAATATGAGGCACGTGTGGAAGAATGCGGATGGTACAAGTAGTAATGAAAAACATATAGACCCTTGGCTTTTGAGGGAGACGCACCCAGATTTGGTACCAGTGGCTGTGGAGAAGGATGCAAGGAGTGATATTGCTGAGATTGACGTGAAGAAGTACCTTGTCCCTAAGGATGCACTTCTTGGAGATTTTATTGCTTATGTTCGGATGTGGATCTTTCTAAAGAAAAGAAAACCTATATTTGTCTTCTTCAAAAACACTGTACCTCCAAAGGGTGCCACTTTGGGTGCAATTGATGAGGAAAATAAGGATGAAGATGGATTTCTTCACATGACCTACAGTGGGAATGATACCTTCAGCTACAGTGGGAATGATGTGACCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.21

Weight (kDa)

7.68

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 2 cut(s) 304, 482
AciI CCGC 2 cut(s) 99, 236
AclWI GGATC 2 cut(s) 62, 428
AcuI CTGAAG 1 cut(s) 547
AcvI CACGTG 1 cut(s) 223
AfaI GTAC 4 cut(s) 244, 306, 365, 471
AfiI CCNNNNNNNGG 3 cut(s) 301, 479, 549
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 1 cut(s) 460
AjiI CACGTC 1 cut(s) 355
AluBI AGCT 3 cut(s) 12, 191, 567
AluI AGCT 3 cut(s) 12, 191, 567
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 2 cut(s) 62, 428
AlwNI CAGNNNCTG 2 cut(s) 71, 314
ApeKI GCWGC 3 cut(s) 95, 101, 104
AseI ATTAAT 1 cut(s) 132
Asp718I GGTACC 1 cut(s) 304
AxyI CCTNAGG 1 cut(s) 375
BanI GGYRCC 2 cut(s) 304, 482
BbrPI CACGTG 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 445
BbvI GCAGC 3 cut(s) 82, 88, 91
BccI CCATC 2 cut(s) 233, 518
BcoDI GTCTC 1 cut(s) 281
BfmI CTRYAG 2 cut(s) 544, 568
BisI GCNGC 4 cut(s) 96, 99, 102, 105
BlsI GCNGC 4 cut(s) 97, 100, 103, 106
BmgBI CACGTC 1 cut(s) 355
BmiI GGNNCC 2 cut(s) 306, 484
BmsI GCATC 3 cut(s) 33, 316, 370
BpiI GAAGAC 1 cut(s) 445
BsaAI YACGTR 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 479, 549
Bse1I ACTGG 1 cut(s) 308
Bse21I CCTNAGG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 6 cut(s) 48, 244, 331, 385, 420, 523
BseJI GATNNNNATC 1 cut(s) 419
BseLI CCNNNNNNNGG 3 cut(s) 301, 479, 549
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 82, 88, 91
BsgI GTGCAG 1 cut(s) 57
BshNI GGYRCC 2 cut(s) 304, 482
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 3 cut(s) 301, 479, 549
BsmAI GTCTC 1 cut(s) 281
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 2 cut(s) 97, 238
Bsp143I GATC 2 cut(s) 67, 420
BspACI CCGC 2 cut(s) 99, 236
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 306, 484
BspPI GGATC 2 cut(s) 62, 428
BspT107I GGYRCC 2 cut(s) 304, 482
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 2 cut(s) 67, 420
BssT1I CCWWGG 1 cut(s) 272
Bst4CI ACNGT 4 cut(s) 169, 469, 548, 572
Bst6I CTCTTC 2 cut(s) 48, 149
BstBAI YACGTR 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 3 cut(s) 113, 345, 375
BstF5I GGATG 6 cut(s) 48, 244, 331, 385, 420, 523
BstKTI GATC 2 cut(s) 70, 423
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 67, 420
BstMWI GCNNNNNNNGC 2 cut(s) 101, 104
BstSFI CTRYAG 2 cut(s) 544, 568
BstV1I GCAGC 3 cut(s) 82, 88, 91
BstV2I GAAGAC 1 cut(s) 445
BstX2I RGATCY 2 cut(s) 67, 420
BstYI RGATCY 2 cut(s) 67, 420
Bsu36I CCTNAGG 1 cut(s) 375
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 6 cut(s) 48, 244, 331, 385, 420, 523
BtsIMutI CAGTG 4 cut(s) 315, 465, 553, 577
Cac8I GCNNGC 1 cut(s) 48
CaiI CAGNNNCTG 2 cut(s) 71, 314
CseI GACGC 1 cut(s) 298
Csp6I GTAC 4 cut(s) 243, 305, 364, 470
CviAII CATG 1 cut(s) 538
CviJI RGCY 5 cut(s) 12, 191, 277, 314, 567
CviKI_1 RGCY 5 cut(s) 12, 191, 277, 314, 567
CviQI GTAC 4 cut(s) 243, 305, 364, 470
DdeI CTNAG 3 cut(s) 113, 345, 375
DpnI GATC 2 cut(s) 69, 422
DpnII GATC 2 cut(s) 67, 420
Eam1104I CTCTTC 2 cut(s) 48, 149
EarI CTCTTC 2 cut(s) 48, 149
Eco130I CCWWGG 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 547
Eco72I CACGTG 1 cut(s) 223
Eco81I CCTNAGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 1 cut(s) 541
FaiI YATR 6 cut(s) 215, 264, 266, 408, 446, 539
FaqI GGGAC 1 cut(s) 356
FatI CATG 1 cut(s) 537
Fnu4HI GCNGC 4 cut(s) 96, 99, 102, 105
FokI GGATG 6 cut(s) 55, 251, 338, 392, 427, 530
Fsp4HI GCNGC 4 cut(s) 96, 99, 102, 105
GluI GCNGC 4 cut(s) 96, 99, 102, 105
HapII CCGG 1 cut(s) 182
HgaI GACGC 1 cut(s) 298
Hin1II CATG 1 cut(s) 541
HpaII CCGG 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 67, 414
Hpy188III TCNNGA 3 cut(s) 19, 35, 125
HpyAV CCTTC 2 cut(s) 316, 571
HpyCH4III ACNGT 4 cut(s) 169, 469, 548, 572
HpyCH4IV ACGT 2 cut(s) 222, 354
HpyCH4V TGCA 5 cut(s) 46, 74, 329, 383, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 104
HpyF3I CTNAG 3 cut(s) 113, 345, 375
HpySE526I ACGT 2 cut(s) 222, 354
Hsp92II CATG 1 cut(s) 541
KpnI GGTACC 1 cut(s) 308
Kzo9I GATC 2 cut(s) 67, 420
LpnPI CCDG 6 cut(s) 20, 84, 138, 195, 309, 321
Lsp1109I GCAGC 3 cut(s) 82, 88, 91
LweI GCATC 3 cut(s) 33, 316, 370
MaeII ACGT 2 cut(s) 222, 354
MaeIII GTNAC 1 cut(s) 583
MalI GATC 2 cut(s) 69, 422
MboI GATC 2 cut(s) 67, 420
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 2 cut(s) 67, 420
MluCI AATT 2 cut(s) 61, 498
MnlI CCTC 5 cut(s) 150, 210, 276, 483, 499
MseI TTAA 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 182
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 2 cut(s) 97, 238
MwoI GCNNNNNNNGC 2 cut(s) 101, 104
NdeII GATC 2 cut(s) 67, 420
NlaIII CATG 1 cut(s) 541
NlaIV GGNNCC 2 cut(s) 306, 484
NmuCI GTSAC 1 cut(s) 583
PctI GAATGC 2 cut(s) 97, 238
PkrI GCNGC 4 cut(s) 97, 100, 103, 106
PmaCI CACGTG 1 cut(s) 223
PmlI CACGTG 1 cut(s) 223
Ppu21I YACGTR 1 cut(s) 223
PshBI ATTAAT 1 cut(s) 132
PspCI CACGTG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 306, 484
PstNI CAGNNNCTG 2 cut(s) 71, 314
PsuI RGATCY 2 cut(s) 67, 420
RsaI GTAC 4 cut(s) 244, 306, 365, 471
RsaNI GTAC 4 cut(s) 243, 305, 364, 470
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 4 cut(s) 96, 99, 102, 105
Sau3AI GATC 2 cut(s) 67, 420
SfaNI GCATC 3 cut(s) 33, 316, 370
SfcI CTRYAG 2 cut(s) 544, 568
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 2 cut(s) 61, 498
SsiI CCGC 2 cut(s) 99, 236
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 4 cut(s) 169, 469, 548, 572
TaiI ACGT 2 cut(s) 225, 357
TasI AATT 2 cut(s) 61, 498
TauI GCSGC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 4 cut(s) 315, 472, 553, 577
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 3 cut(s) 95, 101, 104
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 3 cut(s) 155, 270, 534
TspRI CASTG 4 cut(s) 315, 472, 553, 577
VspI ATTAAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.