Prupe.4G032800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0029039
Physical Location & Seq
Forward (+)
1526984 .. 1527508
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G032800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 486 bp
ATGAACATTTGTGTTGGGATCTGTGGTGCCAATCCAACCGAGAACAACCCGGTTGATCCATCACTCTCACTTTTCCAGGCAGTCAAGACATCCCTCTTTCCAGATTTGTTATCGAATCCCAGCAACATCTTTGGTAGAACTCCTATATCATCTTGGACAACAAAGTTTCCACTGTCTAAAAGAAGTGCAGCTGAACCATTAGATGGCACTAAAATATTGGTTGACCAAATACAACTCTGTTTCCCATCTACAAGCTCCAGGTTCCCATTGCTGTTAATTGTCAAACTAGCCAATGTGTCTGTAACTGAAAGAGCCTTTTCTCTGTTGGCCACCCAAACAACTTTGCGGGGAAATATAGTCTTGTGCCATATCCCCACATACTTGTTAGCAGAATTATTAGGACTGAAGAAGCCCAATTCGAAAATGTGGCCTGGGGAGACAAGAGTTTGTCCCTCTGCTAATGGTTGTGAAGAAGTTATGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.49

Weight (kDa)

8.59

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029039)

Species Orthologous Gene IDs
prunus_persica Prupe.4G032800_v2.0.a1 Prupe.4G033100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 484
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 1 cut(s) 346
AclWI GGATC 2 cut(s) 26, 50
AcoI YGGCCR 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 203
AjnI CCWGG 3 cut(s) 75, 257, 430
AluBI AGCT 2 cut(s) 191, 255
AluI AGCT 2 cut(s) 191, 255
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 2 cut(s) 26, 50
AoxI GGCC 2 cut(s) 327, 428
ApeKI GCWGC 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 50
AsuII TTCGAA 1 cut(s) 419
BalI TGGCCA 1 cut(s) 329
BanI GGYRCC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 200
BccI CCATC 3 cut(s) 67, 197, 253
BciT130I CCWGG 3 cut(s) 77, 259, 432
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 4 cut(s) 50, 77, 259, 432
BmiI GGNNCC 2 cut(s) 28, 263
BmrFI CCNGG 4 cut(s) 50, 77, 259, 432
BpmI CTGGAG 1 cut(s) 241
Bpu14I TTCGAA 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 266
BseBI CCWGG 3 cut(s) 77, 259, 432
BseDI CCNNGG 1 cut(s) 431
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 200
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 2 cut(s) 329, 430
BshNI GGYRCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 2 cut(s) 329, 430
Bsp119I TTCGAA 1 cut(s) 419
Bsp143I GATC 2 cut(s) 18, 55
BspACI CCGC 1 cut(s) 346
BspANI GGCC 2 cut(s) 329, 430
BspLI GGNNCC 2 cut(s) 28, 263
BspPI GGATC 2 cut(s) 26, 50
BspT104I TTCGAA 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 2 cut(s) 18, 55
Bst2UI CCWGG 3 cut(s) 77, 259, 432
Bst4CI ACNGT 1 cut(s) 174
BstBI TTCGAA 1 cut(s) 419
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 2 cut(s) 21, 58
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 2 cut(s) 18, 55
BstNI CCWGG 3 cut(s) 77, 259, 432
BstSCI CCNGG 4 cut(s) 48, 75, 257, 430
BstV1I GCAGC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 2 cut(s) 329, 430
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 170
CviJI RGCY 7 cut(s) 191, 255, 290, 314, 329, 412, 430
CviKI_1 RGCY 7 cut(s) 191, 255, 290, 314, 329, 412, 430
DpnI GATC 2 cut(s) 20, 57
DpnII GATC 2 cut(s) 18, 55
EaeI YGGCCR 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 75, 257, 430
FaiI YATR 6 cut(s) 146, 356, 369, 379, 479, 484
FaqI GGGAC 1 cut(s) 435
FauI CCCGC 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 287
GluI GCNGC 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 241
HaeIII GGCC 2 cut(s) 329, 430
HapII CCGG 1 cut(s) 50
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 223
Hpy188III TCNNGA 2 cut(s) 85, 101
Hpy8I GTNNAC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 188
Kzo9I GATC 2 cut(s) 18, 55
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 9 cut(s) 62, 63, 89, 114, 133, 244, 271, 417, 444
Lsp1109I GCAGC 1 cut(s) 200
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 20, 57
MboI GATC 2 cut(s) 18, 55
MboII GAAGA 2 cut(s) 418, 482
MflI RGATCY 1 cut(s) 18
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 3 cut(s) 276, 392, 415
MluNI TGGCCA 1 cut(s) 329
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 2 cut(s) 104, 463
Mox20I TGGCCA 1 cut(s) 329
MscI TGGCCA 1 cut(s) 329
MseI TTAA 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 4 cut(s) 50, 77, 259, 432
MvaI CCWGG 3 cut(s) 77, 259, 432
NciI CCSGG 1 cut(s) 50
NdeII GATC 2 cut(s) 18, 55
NlaIV GGNNCC 2 cut(s) 28, 263
NspV TTCGAA 1 cut(s) 419
PfeI GAWTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 1 cut(s) 190
PsiI TTATAA 1 cut(s) 484
Psp6I CCWGG 3 cut(s) 75, 257, 430
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 3 cut(s) 75, 257, 430
PspN4I GGNNCC 2 cut(s) 28, 263
PsuI RGATCY 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 191
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 2 cut(s) 18, 55
ScrFI CCNGG 4 cut(s) 50, 77, 259, 432
SetI ASST 3 cut(s) 193, 257, 263
SfuI TTCGAA 1 cut(s) 419
Sse9I AATT 3 cut(s) 276, 392, 415
SsiI CCGC 1 cut(s) 346
SspI AATATT 1 cut(s) 216
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 4 cut(s) 48, 75, 257, 430
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 113, 419
TasI AATT 3 cut(s) 276, 392, 415
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 177
Van91I CCANNNNNTGG 1 cut(s) 203
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.